Array 1 20050-20474 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVK01000100.1 Streptomyces sp. SBT349 scaffold100_size22238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 20050 30 100.0 35 .............................. CCGCACCGGTGTCCTGCCCCCCACGCTGCTGGCCG 20115 30 100.0 36 .............................. GTGAACTCTGGCGGCTGCTCGGTCATGACTGTCCCC 20181 30 100.0 35 .............................. GATAGGCCCCCTCCCCGGAGGGGGCCCATTTGCGT 20246 30 100.0 36 .............................. GCGAAGTACCTCGGGAACCAGCTGTTCTGGCACCAC 20312 30 100.0 37 .............................. CAGCGTTCCCGTGAGCATGTAGAACCTGCCCGATCGG 20379 30 100.0 36 .............................. GGGCACCAGGACCCCGCGTGCGACCTCCGGAGACAT 20445 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 GTTGCGAACCCTCTAGGGGTGATGAGGAAC # Left flank : CAGCGAGTTTGCGGATCGACCAGCGGGTGAAAGGCTGCCCGAGCCGGGCGGGGCGGGTGGTGGCCGTCTGGACGACGAAGTCCTCCTCATCATCATCGAGCAGGCGGGGACGGCCTCCCGCCCACCGAGGGTCCAGGCACGCCAGGCCGATCTCGTTGAACCGGTGGATCACCTCCCGCACCGTGTCCTCGTCGGCCTGGACCAGCTGGGCGATCACCGGGACGCGGTTCCCGCCGGCGGACGCCAGCAGCATCATCGCCCGCCGGTAGCGCACCGAACTGGTGCTGCCCCGGCGCACGATCTGCTGCAGTTTCCGCCCTTCCTGATCGGTCAGTCTGCGCACCCGCACAGGCTCGGCCACCACACCTCCAGCGGTCGCAACAAACGTCACTGCCCATCCAACCGCCACGACCACCAACCCGTGAACCTTCCCGGTCACAGCACTAGGGGTGATGAGGAACCCCACACCAGGAGGTCGAGGAGCTCGCTCCGCTTCCCGT # Right flank : CCAGTCACCCCTTCCAAGGGACTGGGAAGCGCGGAGCGGTTGCGAACCCTCTAGACGAGTAAGTCCTATGTGATCAGTGATCGAAGGCGATAAGCGACCTGGTCGTGGATGCGCCGGTGTGGTGGTTGTGCCAGATCGCGGTGACCATGGCCAGGACTCTCTGGGCGACGCGGACGGCGACGCCTTCGAAGGTCCGGCCGCCGTGCTGTTCCAGCCCGAGCTGGCCTTTGAGGGTGTCGTTGACGGACTCGATGAGCTGGCGGACCGACTTCAGCATCGGCTCGCCCGGCCGGGTCTTCTCCCGCTTGAACGATGGCCGCAACAGGGTGACACCTCGGCTGGCCAGGTCGGATTCGAACTCCTTGGAGGCGAAGCCCTTGTCCGCGATCAGCAGCTGTCCAGGTCGGTCGGCGGTCAGTTGCGGCTCGCGGTCGAGCATCGCGGCCAGCACCTCGCGCTCGTCGATCTTTGGGCTGGCCAGGGCCCAGGTGATCGGCATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCTAGGGGTGATGAGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 21492-21791 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVK01000100.1 Streptomyces sp. SBT349 scaffold100_size22238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 21492 30 76.7 36 AGGA.TT...G................... ACGGCAGCTCCCGCCCGTCGCCCGTCTCCGGAAGCG T [21494] 21559 30 100.0 37 .............................. TGCATACCACCGCGGATGGTGTGCCCGTCTGTTTCCA 21626 30 100.0 36 .............................. GGCGCCCCCCGGCTGCATGTGGCTGCCGGACGCCGC 21692 30 100.0 40 .............................. CCCCGGGCCTCCGGCAGGCTCATGCCGTTCTGCGCGTCGG 21762 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 5 30 95.3 38 GTTGCGAACCCTCTAGGGGTGATGAGGAAC # Left flank : AGGAAAAGCCGCAGGCCCCAATACCACCGGCTGTGCGAGCGGCAGAAGCCGTAGCCGGCCCAGCCGGCCAGCTGTGAGCGCTTGACCGTGGGGCGGGACCGGCCGCACTCCACCGGGGTGGAGTCGGTGATCCACACGTCGTCGAACCAGAAGGCCGTGTCCGTGGCCAACTCCCGGGTGATCCGTTTGACCAGCGGCAACGCTGCTCGCAACCGTTTGTTGTAGCCGGACTGCTGAGGGATGTAGGGGAACATGCTGGTGAGGTGTTTGCGGGCGAACCGCAGCCAGCGGGTTTCGGAGTGGAAACCAAGCACGGCCTGCGCGACCGCGAGGCAGACGAGCTCGGAGTCGCTCAGGCGAGGTGGCCTGCCCATCCACCGGATCCCTCCGATCTCGTCATCGATCTTCACGTACAGTGCGGTCAAGAGGGTGTTCAGGTCTTGCGTCACAACATGATCTTGAACACCCTCTCCTCATGCCTGATCACCGGCCCCAGACAT # Right flank : GGGAACACAAAAACCCCGCCGCACCAATCTCGACAGGATGTTGCGAACCCTCTAGTGTCCTGCGCCGGAAATCCTGGCGATATATTCAGCTAAGGAGTTGAGGATTTCGTCGGCGGTCTTGGTCCACGTGAACGGTTTGGGGTCCTCGTTCCAGGTCCGGATCCAGCTGCGGATGTCGGCTTCGAGGGCCTGCACGGATGTGTGGCTGCCGCGGCGGATGAGGTTGTCGGTCAGGTGCCCGAACCATCGCTCGACCTGGTTGATCCAGCTGGAGCCGGTGGGTGTGAAATGGGTGTGGAAACGGGGATGCCGAGCGAGCCACGCCTTGACCGCGGGCGTCTTGTGGGTGGCGTAGTTGTCACAGATCAGATGGACGTCGAGTTCGGCCGGTACGGCTTTGTCTATCTTCACCAGGAACTTCTTGAACTCCACGGCCCGGTGACGGCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCTAGGGGTGATGAGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 3682-2214 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVK01000219.1 Streptomyces sp. SBT349 scaffold219_size12778, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 3681 29 100.0 37 ............................. TGGAGGGGCTCGCCGACGATGTGCTCGAGGTAGCGGG 3615 29 100.0 36 ............................. CTGGATGCGCCCGGCGCCCGGCGACTGCCCGCGCTG 3550 29 100.0 39 ............................. GTGACCTATGCCGGCAATGAGGCGCACGGCATCGAGGAA 3482 29 100.0 37 ............................. GCCGCCCGAGCATGGTCTGGCAGCGTGGGAACGCCAA 3416 29 100.0 35 ............................. CCGTGATGAACGTGCCCTTCGCGGGCAGCGTCCGC 3352 29 100.0 37 ............................. CCGCAGCGGAGGATCCCGAGCAGCGGCGAGCCACCGG 3286 29 100.0 37 ............................. TTGGTCATGCGGAGCGCGTCTTGGAGTGCTCGGGCGG 3220 29 100.0 36 ............................. TGAGCCCGTTGGCCAGGAGCCGCAGGCATTGGAGCC 3155 29 100.0 38 ............................. GGGCTCAGAAGGCCCGACAGCTTGCCCTGGGCCACAAA 3088 29 100.0 36 ............................. CGCAGGCCCCCGCCGGTACCACTCCGGACGGGGGCC 3023 29 100.0 38 ............................. GTGGCGACGGCGTGGAGGCGGGCGCCGTCGTTGTCCAG 2956 29 100.0 34 ............................. CCGCGAACGTGCCGTGCGCGACGCCCGGCGTGAG 2893 29 100.0 39 ............................. GTGACAAGCTCGTACCCGGTGAGGGGGAAGAAGGTGCGG 2825 29 100.0 37 ............................. GCGGCCTCCGGCGGCGGGGGGAGTTGCGCGTCGTGGA 2759 29 100.0 39 ............................. TCCACGACCAGGACGTCGACGCCCTCCAGGCCGCGGCCG 2691 29 100.0 35 ............................. CGTTGCGGCCGGTCCTCATCCGGCGCGGCCTGCAC 2627 29 100.0 39 ............................. GCAGGACGCGGACACTCAGCCGTCCGACTTCCCGCCCTC 2559 29 100.0 35 ............................. TGGTCAGCGCGGGCCTGTTCGAACATCAGGCTCAT 2495 29 100.0 40 ............................. CGTGGTGGCGCCTGCACGTGGGCACCTGGGGCGGGACCCG 2426 29 100.0 36 ............................. CGGCGCCTGCTTGTGTTCCAAGGCATGGCAAAGCAC 2361 29 96.6 34 ........................A.... ACCATCAGCGCGGTGCGCAGCTCCGCGGTGCCAG 2298 29 89.7 27 ..........G........C......C.. GTGACGGCGTCTGCTACAGCGCGGCTG Deletion [2243] 2242 29 72.4 0 ....C...G.TG....A.T....T..G.. | ========== ====== ====== ====== ============================= ======================================== ================== 23 29 98.2 36 GCCGTCATCACCCCTGGAGGGTTCGCAAC # Left flank : GTCCACCACCGCGCCCTCAAGCGGAAGGTCAGCTACGAGGAGATCATCCACCTCGAAGCCCTCAAGCTCGTCCGCCTCTGCCTCGAAGGCACCCCCTACAAACCCTTCCGCCCCTGGTGGTGATCCACATCTTCGTCATCCTCGTCTACGACACCGCGGTGGAACGCAACCCGAAGGTCCTGAAGACCTGCCGCAAGTACCTCCACTGGACCCAGCGCAGCCACTTCCAAGGCGAGCTGACCACCGCCCAGTACCGAGCCCTGATGGCCGCCCTGAACACCACGATCGACCCCGAACACGACAGCATCGTCACCTACACCACCCGCTCCCCAGACCTCGTCGAATCCACCACCCTGGGCCTCACCCTCGGCGGCCCCGGCGAGATCCTCTGATCACCAGCACCATGCCTGACCTGCACTGATGCACTACCGCCGGACCCCTGCAAAACCCAGCCCGAGCCACCGCCCTCAGCACCCCCTGACCAGCGGCTTTACCCTCGG # Right flank : GCGGCCCTTTCCAGCGAACTCCTCCGAGGTGTTGTGGTCGCCCTCAGAGACAGCAGAGCTCCGGCTTTAAGAAGCAGGATGAGGCGCCCCGAATCGACGGCAACAATATGCCGGAGTGGGTCCTCGTCAACGGCTCCAGGTGACTCATCGCTTCAGTGCAGCATCGATCACCAGTGACCAACCCCCGATCCTTTCGGAGATCCTTCCATGCCGATCGGTTCGGTGGTCCTGCTTTGATTGGGTCAGGTGCCCGGAGCGAAGGTCCTGGTCGGCGGCTTGTTTGCCGCGGGGTGCGGGGGCCGACTGTATATCGGTACAGGAACGTATCCCGATCCACCTCCGCAGCGTGCCCGGCCTCGCATCCCCGGTGCCCGTATCACGGTTGCCTGCCTACCGGTGAATTCCTCCCCCTCACTCCACTCATTTTCATTTCTCTTTGAGAATTCCTTTCTCTCGATGGCCCTTCTCGGCGTGAGGCGATGGGGATGCTGCCGCCCGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTCATCACCCCTGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 306-577 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVK01000304.1 Streptomyces sp. SBT349 scaffold304_size9041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 306 29 100.0 32 ............................. TGGATACGGCAGGTGACGCGATCGGGCGCCTG 367 29 100.0 32 ............................. GTCGGCGTCGCACAGATGGAGGTCGGGCGCGC 428 29 93.1 32 ..............G...G.......... GCCAGCACGTACGGCACCGCGTTCATGACGCC 489 29 93.1 31 .............G....G.......... ACACCGGAGGCGTAGCCGGTCTGCTCGGCCG 549 29 72.4 0 .............G....G..ACC.CCG. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 91.7 32 GTCCTCCCCGCGCAAGCGAGGGTGGTTCG # Left flank : ACCGCCCACCCCCGACCTCACCCCCCTTCACCGCATCGCCAACCTGGCACGCCTCCTACGCACGTGAACCCGCATCGCATGTTGCAGGGCAGAAGCGAAGCAAGCAGAGCCCATCACGCGCGGACCGCGAACTGGACAAGCCGTCACCCTGCGGCTCAGGCACCCAAAGGCCCGAACACACCAACCGCTGACAGCCCCGAACCGTAGAATCCGCAGCTATGCGATCACCCCAGACACGCAACAAAGCACCACACCCAGCCGATAACGAAACGGCAAACCCCCTCTAACCCCACAGCTCAGGAAGTG # Right flank : GGGGATCAGGCCGAGTTCGGGTGTGGGGTCAGGAAGTCCGCCAGGCCCTCCAGGAGCCGGTCGACGTCCTGCGCGTCGTTGTACGGGGCCAGGCCGACGCGCAGTCCTCCCGTGTCCCCGAGGCCGAGTCTGCGGGAGGCTTCCACCGCGTAGAAGGACCCGGCCGGGGCGATGACGCCGCGTTCGGCGAGGTACCGGTAGGCGTCGGCGCTGTCGCGGCCGTCGAAGGTGAGCAGCAGTGTCGGTGTGCGGTGGGCGGCCCGCGCGTGCGGGGTGATGGGGCCGAAGCCGGTCAACGCCTCCTCCAGCCGCCGAAGCAGCGCGTGCTCGTGCTCTTCGAGGGCCGCGAAGGCATGGGCCAGCCGCTCCCTGCGGGTGCCGGGCGGCGGGGTGCCGAGCCCGGCGAGGAAGTCGACCGCGGCCCGGGCGCCCGCGAGGAGTTCGTAGGGCAGCGTGCCGAGCTCGAAGCGTTCCGGGACCGCGTCGGTGGAAGGCGCCAG # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAAGCGAGGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.30,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 393-625 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVK01000550.1 Streptomyces sp. SBT349 scaffold550_size5120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 393 30 100.0 37 .............................. GCGTAGACCGGGGTTGCGCCACAGGCTCAGCGCACCC 460 30 100.0 37 .............................. CCCCGCCGTAACGAGGCCTCGGGTGTTGGGCGGCGCG 527 30 100.0 37 .............................. ACCAGCGGAAGCGCGTCATCGTCCTCGCCTGGCCTGC 594 29 86.7 0 ................T.C..-.......T | CCG [619] ========== ====== ====== ====== ============================== ===================================== ================== 4 30 96.7 37 GTTGCGAACCCTCTAGGGGTGATGAGGAAC # Left flank : GGACGGCCTCCCGCCCACCGAGGGTCCAGGCACGCCAGGCCGATCTCGTTGAACCGGTGGATCACCTCCCGCACCGTGTCCTCGTCGGCCTGGACCAGCTGGGCGATCACCGGGACGCGGTTCCCACCGGCGGACGCCAGCAGCATCATCGCCCGGCGGTAACGCACCGAACTGGTGCTGCCCCGGCGCACGATTTGCTGCAGCTTCTGCCCTTCCTGATCGGTCAGTCTGCGCACCCGCACAGGCTCGGCCACCACACCTCCAGCGATCGCAGCGGACCTCACCGCCCATCCAACCGCCACGACCACCAACCCGGCCAACCTTCCCGGTCACAGCACTAGGGGTGATGAGGAACTCGGGATGGACGACCCCGGGCTGCTGATGATCGAGACG # Right flank : TGTTTACCGGGGTCAGGTCGATCAGCCTGGTCGTGCTGCTTCCCACCTCCACGAGGTTTGGCGAGGGAGGCCGTCGAGTTCTCCGCGGCCGGTGCACCAGAGGAGTACCTGGATGGGGTCTGCGGACGGGGCGGCGGGGAAGAGCCGGTTGAGTACTGCCGCGCTCAGCGGTGCTGGCGGCAGCCAGTCCACGGACAGTCCCTGCGTGATGTCGTAGGTGTGCAGCAGGGTCTCGGCGACGCCCATCGCCGCGAAACCTTCGAGGTCGCACGGACCCCAGTGCCAGGCCCTCAGAGCGGGGTTGGCTGTGGCCAGGGCGCTGCTGAGCAGTCCGCCGCAGGCGGTGACGGCCTGGAGTACTTCGGCCGGCGAGGCAGTGGGGCGGACGTTCAGGTCGATGGGAAGGTAGGCATCGGCAGGTCGTGCTGCCAGTTGCGCTGCGTAGGCCAGCAGGTCATGGCCGACGTGGGCTGCTGTTTGCCAGCAGGTCCATTCGAGCG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCTAGGGGTGATGAGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 7380-6471 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVK01000165.1 Streptomyces sp. SBT349 scaffold165_size16050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================================================================================== ================== 7379 30 80.6 107 .T....T.T...-......A.........G. ACGTTGGGCGTGACAACCCCGGGATTGACTTGAACATCGCAGTAATCCTGGGGGAATTGATGAGGAACCTGTACAGCCACGGCGCAGCCCACGGCCAGCGCAGCAGC T [7375] 7241 31 83.9 35 G..C.T..............C...A...... CGCCTTCGAGATGGACGAGAAGTTCTGGCCGGACG 7175 31 100.0 39 ............................... GCCGACGCGATCGGCTGGGCCACCCCCGGCCGGAAGGGG 7105 31 100.0 36 ............................... CCGGCACCGGCCGCGTCGCCAACGGCATCGCCTGGC 7038 31 100.0 35 ............................... CCGTGTGCACGAGCAGCAGCACGTCGAAGTCGCCG 6972 31 100.0 36 ............................... TTCGTATTCCGCACGGGCAAGCAGGTCAACCGCAAG 6905 31 100.0 33 ............................... GGGAGCGGCTGGAGGAGGCGGAGCAACAAGCCG 6841 31 96.8 35 ..............T................ CGGGAGATTCCGCGGCTCCGGACGTCACGCGGCCT 6775 31 96.8 35 ..............T................ GTACGGCATCGACCCCCGGACGGTCCGCCGGGTCC 6709 31 90.3 37 T.............T.....G.......... CCGCAGCGCGGAGGAGTGCACCCGCACCGTGATCACG 6641 31 93.5 38 G.............T................ GACCGGCCGAAGAACGCCGTCAGGATCCGCGCGATACA 6572 31 96.8 38 ..............T................ CGGTGTCGGCCTCGTTGTCCGCCGGCAGCTGGCGCTCG 6503 30 83.9 0 ..............T..T.C..-.......G | GCC [6475] ========== ====== ====== ====== =============================== =========================================================================================================== ================== 13 31 94.0 42 CGTTGCGAACCCTCCAGGGGTGATGAGGAAC # Left flank : CTAGAGAGTTCTCAACATGCAAGGAGTCGCGTCGCCCGTCGTCTCATCAGCCCTAGAGGGTGTGCATGCGCTGGCCATCAGAAGATCGACGTGCCACTTGGGCTGGCTCGCTAACTCTTCAGAGGCATTCCAGGCAGCAGTCCAGGTGCAGGATGCACGTGCGCCTGTGGGCGAGACACGCCATGAGTCTTAGTCGTCCTTGTCGCCGTGGCGAGAAACAGCTCAAGGTCATGCATGTTGTGAGGGTCACTGCAAATAGGATTGTTGAGGCATCGATGTTCACGGGCGGGTACTCCTGTCTGTCGCCGTCAAGCCGACTCTGCATCAGCACGGACTTTATTTTTGCCGAGACACGCCGCAGCGCGCGCATCTTAGGCCGACTGGGTTTGGCAATGTCGAGGGCAACCGGGGTGACGTCACTCCATGCATCGAGGAGGGAACGATGCCGTGCATCGAACCCGTGAGCGTCCTTGATGAAACCCTGAAGTTGGGAAGGAAAG # Right flank : GTTTGCCGGGTTGGTCAGGCTGCGGGTTGGAGGGGGCGTCCGCCCCAGCGGATGCCTTTCTCGCTGCGGATGCGGGCGCGTTCTCGGCGTTGGGCGGTGAGCACGTCGGGGTGGCGGGCGTTGGCGTTGCGCCAGCGCAGGTAGGCGTGCAGGGCGTGGGTCTGTGCGGGGTGGCTGCGGTGGTGGGAGTTGGCCAGGGTGAACTGCCGCAGCGGGCCGAAGTGGGCTTCGATCGGGTTGGCCCAGGAGGCGTAGGTCGGGGTGAAGCACAGCTCGACCTTGTTCCTGTCCGCCCAGCGGCGGATCGTCGCTCCGGTGTGGGTGGACAGGTTGTCCAGGACGATGTAGACCGGGGCCCCGTCCGGGCGGGCCGCACGGATCGATTTCAGGGCTGCCAGGGTGTTCGCGGTTCCCTTGCGGCGGTTGTTGACGCCCCACAGCCGGTCTTCGCCGACCGAGTAGCAGCCGTGGAAGTAGGTGACGCCGTGGGTGCGGCGGTA # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.58, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTGCGAACCCTCCAGGGGTGATGAGGAAC # Alternate repeat : CGTTGCGAACCCTCTAGGGGTGATGAGGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //