Array 1 84197-85507 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOIS01000018.1 Escherichia coli strain 686 BN4_686_1_(paired)_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84197 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 84258 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 84319 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 84380 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 84441 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 84502 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 84563 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 84624 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 84685 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 84746 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 84807 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 84868 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 84929 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 84990 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 85051 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 85112 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 85173 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 85234 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 85295 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 85357 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 85418 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 85479 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111057-111756 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOIS01000018.1 Escherichia coli strain 686 BN4_686_1_(paired)_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111057 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 111118 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 111179 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 111240 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 111301 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 111362 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 111423 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 111484 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 111545 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 111606 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 111667 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 111728 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //