Array 1 871375-872848 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSY01000001.1 Pasteurella testudinis strain NCTC12150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 871375 28 100.0 32 ............................ TCAAACACATATCCGGTAACAACAACCTCTCT 871435 28 100.0 32 ............................ GCAGCCGTGCGAGGACGTGAGGAAATGGCGGA 871495 28 100.0 32 ............................ AACCGGAAATTAAGTGAAGCCAAGCGCGCTAA 871555 28 100.0 32 ............................ TTGCTTGCCCCGCAAATTAGACGGTCGAGAAG 871615 28 100.0 32 ............................ GACAATCAAAAATCAAGCGATTGATCTCAAAA 871675 28 100.0 32 ............................ ATCCGGACACCGGGCTTTGCTGTGATTTAGCA 871735 28 100.0 32 ............................ AACGTGGTGGCGGTAGTATGGATGGCGACAGC 871795 28 100.0 32 ............................ AGCATCACCTATCATTAACGCCGTTGGGCGGT 871855 28 100.0 33 ............................ GTCACAGATATGGTCAGTGTAGGGAATGGCGCC 871916 28 100.0 33 ............................ TCTTGATTTTCCATGTTTCCCCCTTGGAATTAC 871977 28 100.0 33 ............................ TCCAGCCTCTTTAATGGTGCCTTGCGTTGAACC 872038 28 100.0 32 ............................ GTCCTGAGATTGAAGTAATTCCCCTTGTCATC 872098 28 100.0 32 ............................ GGCATTTTTAGCCCGTCTGATGGGCTATTACA 872158 28 100.0 32 ............................ GAAACACAATCCGAAATGGATAGAAAAACATT 872218 28 100.0 32 ............................ ATGAAACTGTAAGTCGTGGGATAGGGGCTCTT 872278 28 100.0 33 ............................ CAACGGTTTAATCAATCCACGCTCTAAAAGGTC 872339 28 100.0 32 ............................ TTGTAAGTATCTTGATTTTAATTTCTGCTCAA 872399 28 100.0 33 ............................ CGTTTAAGGCACCCGATTTTTATCAATATCCGC 872460 28 100.0 32 ............................ TGACGCAGTGGTGATTCGGGAAAGCCTTGCAG 872520 28 100.0 32 ............................ ACCGACCCGAAGTTTTGTCACGTCGGGGTTTA 872580 28 96.4 32 ...................A........ TGATCGCCTGAATGCGTACGACTGTTATTAAC 872640 28 100.0 32 ............................ TGAAAGACGATAGTGGAATTAAGTAATTTATT 872700 28 89.3 33 .....CT.....A............... GTCTTGCAGAGCTTGAAGCAGAAAATGCCTTAC 872761 28 89.3 32 .....CT.....A............... ACTTGCCCCAAATTTTGAAAGCGATAATGTTC 872821 28 82.1 0 .....CT..T..A............G.. | ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.3 32 GTTAGTCATCACGCAGATGGTTTAGAAA # Left flank : TATGTTTGATGTAGTGAAACAACTGGCGTTGAGCAATAACGCCAGTGGAGAATAATCCACCGGTGTGGTGGGTAAAAGAAAGTGATATTTTTCTAAGCTACTGTATCAGTAGAAGGATAGTATATATGAAAACGCATAGTATAAATACATAAGAATATTTAATAAAGTGATATTGGGTATTTTATTTTGGTGTGTGGTAGGTTAATATCTGTTTTAACCTAGCGTAGATACCGACTGTGGTAGTGTCGGTCACTCACAACGGGTTCGGATATGATCACGTTGTAGGTGATATAGACGTTAAAGTGCGGTTAGATTGCCAATTTGACCGCACTTACATCAAACTTTGGCATGATCTTTTGAATTCAACAAACCTATTTTTGGACGTTCTTTTAAAATATATTATTTATCAACTGGTTAGGTTTTATGTAAAAACAATTGGGTAATATCGGATTTTATCTCTAGCCCATTGATTTATTTGTTTTTTCTATGATAATGTTCTA # Right flank : ATATTATAAAGGGGTGGTGATTATTGTTTGTCAGTCATCGGTCGATGTCATCATAAAAAATCAAAGTGCGGTTTAAAATGGATAACCACACGTTTGATTTTAGATGATGATTGAGTGTTTAAACCGGTTATTTCAATAACCCCGATGCTTTTAAGGCGGCGGTGATGATCGGTTGGGCTTGTTCGCTCAAGACCGTCAACGGCAGGCGTAGGAAAGGATCGCTGATTAAGCCGATTTTGTGGCACGCCCATTTTACCGGAATCGGGTTGGATTCGACAAATAAGTCTTTGTGCAATGGCATTAAGCGGTTGTTGATTTCATCGGCTTGGGCAAAATCGCCGTTAAGGGCGAAGCGACACATTTTCGCCATATCGGCGGCGGCAACATTGTTGGTGACGGAAATCACGCCTTCGCCACCGGCTTTAATCGCGTCCAGTCCGGTTGCATCGTCACCACTTAACACGATAAAGTCTTTGCCTGCCAATTCTTTGATTTGGCCG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTCATCACGCAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 965217-965791 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSY01000001.1 Pasteurella testudinis strain NCTC12150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 965217 28 100.0 33 ............................ TCACAAACCAATGAAGAGGTAACAGCATGAGCG 965278 28 100.0 33 ............................ CAACGCATTCACAACAAACACATACTGAGCAAA 965339 28 100.0 33 ............................ CAGTTGGGTTAAAAAATAGACAAAGTGTTTCCA 965400 28 96.4 33 .......................G.... TTCTCGCCCTGTGTCAAGCCAAAGGGAAATATA 965461 28 100.0 33 ............................ TTCAGAAATCGGACTAGTTCGGAAAGTGAACTA 965522 28 100.0 33 ............................ CTTCAGACGCACGATTAGCTATGCGACTAGCCT 965583 28 100.0 33 ............................ CTTTAAGCAGTCACCCGATTTTTTCGCAACTGT 965644 28 100.0 33 ............................ TATCAGCTGCCCACAAACCACGATTACCGGTGA 965705 28 100.0 31 ............................ TACTATGAAGACCACATCGCCACCGAGCAGC 965764 28 85.7 0 ......G.......CA.......G.... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 33 GTTTTCTCCACGCATGTGGAGGTATTTC # Left flank : TATGTATTGATTTGGCATTTTCCTTAACGAAAGAAATGGCAGGAATGTACGATAAGCATCAGGTTTCGTCTGCTTTTAGAACGCGTGTAATTGAATCTGAGTTATTAACGCAAATAGGATTGGATATCATTGAGTTACTAGGGGGACGAAAAAATGCTGGTCGTACTAGCAAATGATCTACCTCCAGCAGTTCGTGGGCGTATGAAATTATGGTTTATTGAACCACGTCCTAATGTTTTTGTTTCGGGAATAAAAGATTCTGTAGCTAAGACTGTTACCGAATATCTATTAGGACATTGTCCAATAGAAAGTGGATTGATTATTTTTAGAAAAATTCCCCAAGCTCCAGGTTATGAGATTCGTACTCTAGGTCATACTAAGAGGGAGCTAATTAGCATTTCTGGTTTACAATTAGTGATCGAAAAATTTATTGAATAGCTTTATAGCCCGTAATCCCAAAATATAGTGTTAAAAGCTATGCTCTTTAACAATATAATGGT # Right flank : CGCATTTCTGCAAATATCAACTATTTGAGGTGCTATTTTTCTATGAAAATAGTAGATATTTTAAATATATGACATACTTTAATGATTTTATCTATAAACAAAATAAACCCCCACCATCGCCACCAAATACACAATTCCTGCCCACGCCAAATACGTCAGCCAGCCTTTTTGTTGTTTATCCTGGCGTACGAGGCTAAAGTTAAGCCAAGCAAACACTGGGGCAGAGATGAAGGAGGCGGTCATGGCGAAGGGGATCATTTTGCCGATGGCGCTGCTGAAAAACTGAATCACGATAAAGGCGGAGAGGGTGGTGAACAGCATGGAGTAGCGCAGGGCTTTGTCATGATGTGCGCTGACCGCACTTGGTGTTGCGCTTTGGCGTAATAAAGCGACGGTTTGCTGATTGCAGCGTGAGTAGCCGTCCACGGCGACGATGGTGGTGCCGTAAATGCAGATAAAGGCGACCAACGCCATAAACCAGCGTGTCCATTCGCCGATGC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACGCATGTGGAGGTATTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //