Array 1 42150-40860 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANDJ01000170.1 Streptococcus agalactiae CCUG 44104 ctg120007560921, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42149 36 100.0 30 .................................... GATGTCTAGAGATGCTCTCACCAAGGTATT 42083 36 100.0 30 .................................... TGCTCAAACTCGCAAAGTAAATGTTCGCAC 42017 36 100.0 30 .................................... AAATCAACATGTCGTACCTAACCCTAATGG 41951 36 100.0 30 .................................... TCTGTTTTTTGAATTCGTCTAATTGTTTCT 41885 36 100.0 30 .................................... ATTTATTTTAAAGATATGTTAGCTGAATTA 41819 36 100.0 30 .................................... ACAGCTTGATACTAAAAAGATTGAATTTAC 41753 36 100.0 30 .................................... TGCCATAACCTCCATAAAGTTTTTCTGTTC 41687 36 100.0 30 .................................... GAGTTGTCAGTATTAAAAGCTGAAGCTTTA 41621 36 100.0 30 .................................... AAGTGTGTTATCATATCTTCCTTTGGTTTT 41555 36 100.0 30 .................................... AATAGGCTTAGGCGCATCTGGTTCTTTACT 41489 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 41423 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 41357 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 41291 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 41225 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 41159 36 100.0 30 .................................... ACCCCAAAGTTATCAAAGAAGATGACCATA 41093 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 41027 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 40961 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 40895 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGCCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //