Array 1 86301-80119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMP01000003.1 Thermorudis peleae strain KI4 N675DRAFT_scf7180000000034_quiver.3_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 86300 30 100.0 37 .............................. ACGGTGTATCGGAGAATGAAGCCACGCTCAGCAAGCG 86233 30 100.0 37 .............................. AGGTTCACGATGTTCACGGCTCTCTCCCTTCTCGAGG 86166 30 100.0 38 .............................. GGACGTGCTCGAGACGTGGAACCGTGACCTACTTCTGA 86098 30 100.0 36 .............................. GTGCGGGAGTGGTGAGCGACCACACCGCGCAGCAAA 86032 30 100.0 36 .............................. CGTGACCAGCCGGTCAAGCGCGAGCTCAATCCGGCG 85966 30 100.0 36 .............................. CAGCTGGGCGCGCATGAACCAGACTGAGCGCCCACC 85900 30 100.0 38 .............................. AAGTCTTCGTTCCCGGCCTCTACGGCTGCGAAGGGCCG 85832 30 100.0 38 .............................. AGCGGTATCCGTTCCGGTTCCGCAGGGAAGGGGACGTG 85764 30 100.0 37 .............................. TCTCGATCACCGGTGCCTTCTCCTCTCGTTCGTCGTC 85697 30 100.0 36 .............................. CTCCAAAAGCCGCGCCAGCCTCAGCGCGGCCTCAGT 85631 30 100.0 37 .............................. CGGTACCTGAAAAACAGTGCCGTAGGGGCTTGACAAC 85564 30 100.0 39 .............................. TGTGTCACCACCCGGTTTTGCCGCAGTAAGGTTGTCCAT 85495 30 100.0 36 .............................. TGGGTGCTAAGGGGGGACGACGATGCAGCTCGTGCG 85429 30 100.0 37 .............................. CGGTAAACCGTATCATGAGCTTACGTTTACGAAGACT 85362 30 100.0 40 .............................. TAACGCCCAGATTTTTGCCTCCGGCCCGCGTTGCTGCAGC 85292 30 100.0 37 .............................. GGTTCCGGCCCGAGCCAGCGCCGTGGAGGGTCGTGGT 85225 30 100.0 37 .............................. GTATCCCGCGCGACGGCCGAGGCTTCCCGTGCTTCTC 85158 30 100.0 36 .............................. TTTGGCTCGCTCACCTAACGTGGTTCTCTCCGCGTT 85092 30 100.0 36 .............................. GAGCGTGTCGCTCCTGGTGCTGTCCGCGCTCGGCTA 85026 30 100.0 38 .............................. ATCAGCGAGCACGATGTTGAGCGCGCTCGCGCCGGGCT 84958 30 100.0 36 .............................. CATGGCACGAGCGTCGCGGCTGACGAGCTGCTGGCC 84892 30 100.0 37 .............................. AACCTTACCCCTCATGCCCTTACGCTTGTTACTCCGT 84825 30 100.0 38 .............................. TATCGATAATAAGAATCATCGAGAAGACGATACTTCTC 84757 30 100.0 37 .............................. GGGTTGCTCGAGGGCGGCGATGGCTGCCTCGAGCACA 84690 30 100.0 36 .............................. CGGCTTCTCCCGCCGGATCAACAAGCGAAGGCCTGG 84624 30 100.0 38 .............................. AGGAAGACAATGCCGATGATCGCCATCACCGTCACGGT 84556 30 100.0 40 .............................. AATGTAGTCGTCATCGAGGAGAAGAAAGACATCGAGGCCA 84486 30 100.0 37 .............................. CTGCCATCGTCGGTGACGCGGTAGAGAAGACAAAGTT 84419 30 100.0 41 .............................. TCCTTCTCCACCTCCTGGTGGACAACCTGGGACAACGCCGA 84348 30 100.0 38 .............................. AATCCAACGGCAAAGGTATCGCTCCGTACCGGAACGGT 84280 30 100.0 36 .............................. TCTACGCAGGCCGAGCACATTGGCCGCCCGGCAACC 84214 30 100.0 35 .............................. GCCGCGGCTGGCAGTGTGGTCTCGGTGACGACACT 84149 30 100.0 40 .............................. CTCTTTGTCCATCTATCCCCCCATTCGGAAAATGGTACGT 84079 30 100.0 35 .............................. AAGAAGCGCGAGAGCGCCTTCGGTGAGGCGAGCAT 84014 30 100.0 36 .............................. CCACCTCCTCTTCTTCGTCTTCTCCTACGATCGATG 83948 30 100.0 39 .............................. CAGGTGTGAACAGAAGAGGGGGTGGTCATGTGACCAACC 83879 30 100.0 37 .............................. TTGACAAGCTTTGTGATGGATACGGATTCTGGCGGCC 83812 30 100.0 37 .............................. CACCGCAAGGATCAATTCACGCAGGGAATTGGGTACG 83745 30 100.0 38 .............................. GGACATACGGCCGCGTGACGGACGAGCATCTCCGCGCG 83677 30 100.0 36 .............................. TTCGACGACGTCGGGACGCTGGGAAAGGGTGCGCAA 83611 30 100.0 38 .............................. ACGACATTCTGCGCTTCATGAAAGACGTGTTGGCTCGG 83543 30 100.0 35 .............................. ACGTCAAGGCGGCGCTCAACTGGCATCGGCCGGAG 83478 30 100.0 35 .............................. ACGTCAAGGCGGCGCTCAACTGGCATCGGCCGGAG 83413 30 100.0 38 .............................. GTGCTGGAACGCCGAGGAAGCACGTGGACATGCCTGTC 83345 30 100.0 36 .............................. CCCGGTCGCAAAGGCGGTGCGCGAATTCGCGGCCCA 83279 30 100.0 36 .............................. CGCTCACCGCCGGCGCGGCCAATGGCTTTGCCAATC 83213 30 100.0 38 .............................. CAGGCTGAGCGCTGAGAAGGAGCGCCGTCACCGAAGCA 83145 30 100.0 37 .............................. AGGATGTCAACATCGGGCACAACCAGTGTGGAAGTGC 83078 30 100.0 37 .............................. AGGACTCCGCGGCGGTGGCAACCTATGGCGTTCGGGA 83011 30 100.0 35 .............................. TGCGGTAACAGGAGTTCAAACTCTTTCGGGTAATC 82946 30 100.0 35 .............................. ACCGGCCTCGCGGTGAGTATGACTGCTGTGCGCGG 82881 30 100.0 35 .............................. GGATGCTGCTTCGCCAGTGCGCAAGACGCGGTTGA 82816 30 100.0 37 .............................. CTCCGCCGCGGAACGCGCGGATCACGCTGGCCGTTCC 82749 30 100.0 37 .............................. GCAGAGACGGGCGATCGTGCCGCTCGCCGTGGTCATG 82682 30 100.0 38 .............................. GAACGTCCGCTCAATCGGGATTGAGCACGAACAGTATG 82614 30 100.0 36 .............................. CTTCGCTGGGGGCGGCTCTGGATGCAGAATGCGCAG 82548 30 100.0 36 .............................. CAGCCGGGCGTATATCTAATATAATATGGAGGAAAG 82482 30 100.0 36 .............................. AGGATGATCATCCGGAACCAAGAGATTACCGGGCGA 82416 30 100.0 39 .............................. TCGCCGTCGCCCGCCAGGCCGGGCTCCCGAGCAAGTACG 82347 30 100.0 36 .............................. GAGCGCTTCTGCGCGTTCCGGCATGGGAACCTCCTT 82281 30 100.0 35 .............................. GCCGGATGTCGACCTCACGCCGACGGCGTTGGCAG 82216 30 100.0 38 .............................. CACCAGCGCTCACCTCGCTCAGTTGGCAGCAGCGGACG 82148 30 100.0 36 .............................. TCGTGACCGTCGTACCGATCGCGGAGGGCTCGTCAT 82082 30 100.0 36 .............................. CGCTCCTGCGCTACGTCTCCCAGACACGTGACCGCT 82016 30 100.0 36 .............................. TTGGACACGCATGGCCTCACGCATGCCTCGATCTCG 81950 30 100.0 37 .............................. GGCGTCGGGTCATTACGGGAAGGTATCGAGTGTCACG 81883 30 100.0 35 .............................. TTGCGCCCGACGTAGACGCCGTACGTCGTCCCAGC 81818 30 100.0 36 .............................. AGCGAGTCGGTCTTCAAGATGCTGAATCCGTCGCTC 81752 30 100.0 35 .............................. TCACCCGAATCGGACAACTCCAGTCCGATGTGCAG 81687 30 100.0 36 .............................. CCATTCCAGCCTTCGGCGTCCTCAAGAATGCCGTCA 81621 30 100.0 37 .............................. TCCACTCGTCCGAGAGAGTGGGATCAGCGGTAATTTC 81554 30 100.0 36 .............................. TCAGAAGCGAAGCCAGAGCCACAACCAGAGCCCGAG 81488 30 100.0 38 .............................. GCGACCTCCCAGTCGAGAAAATCGTGGCGATGGCAACG 81420 30 100.0 35 .............................. CACAGTTAGGTTGTCTTCCTTCAGCTCGTCGGTGA 81355 30 100.0 36 .............................. CCAAGTGCCGCAGGGGGGTACTCACTCTTAGCGGGC 81289 30 100.0 37 .............................. TGTCTTCCCGGAGGGGCTTCCCCGGGAAGACAATCTT 81222 30 100.0 37 .............................. GATAAGGGGGAACCGATGAGTGTCAACAAGGCGGATG 81155 30 100.0 38 .............................. CAGAGTCAACACTCGCAGTCCATCCCGTTCCTGCAACG 81087 30 100.0 35 .............................. GCACAACAGTTGCAATTGCTACGAGACTCTTCACC 81022 30 100.0 36 .............................. CTGGCAACCGGAGTCCGTGTCCGGGAGCAAGCACGC 80956 30 100.0 38 .............................. GCCGGAGTCATCGAGCATGTGGTTGCCAGCCTCGGCGA 80888 30 100.0 43 .............................. CGCCAAGCGATAGCATCCAGTTCCGCTGTTTCCCCCACCCCAG 80815 30 100.0 35 .............................. CCTCCCCCGATCGGCATGCCAGTCCTCGAGACACC 80750 30 96.7 37 ..C........................... TGCCCTCGCGCAGCACCCCCAACCACACCTGGTACGT 80683 30 96.7 40 ..C........................... TGCCGAGTGTGCCCAAATGCGCTCGTGAGCCTGATTGTTT 80613 30 96.7 36 ..C........................... TTCTCTGCGGCATATGCCACGATCTTTTCGAATAAC 80547 30 96.7 36 ..C........................... ACCAACTCGGCACGCACGTCGTAGAGGCTGAGGTAG 80481 30 96.7 35 ..C........................... ATCTGCTCAGCATGTTCCGGTGGGTTGGCGGCAAT 80416 30 96.7 37 ..C........................... CTCGTCAGGGGCCACCACGGCTTTGCCATTGGGCTGC 80349 30 100.0 35 .............................. TCCCAGACTTCATACATACGGCAGAACGCCGTACG 80284 30 100.0 37 .............................. ATCGCACGGTCACGCACGGTCTGCGGGTCGAGCGCAA 80217 30 96.7 37 ..C........................... CCGAGGTGGGGATGGGGAATGCGAGCAGTCCAGCCGA 80150 30 96.7 0 ......T....................... | GT [80124] ========== ====== ====== ====== ============================== =========================================== ================== 93 30 99.7 37 GTTTTGCCCGTACCTATGAGGGATTGAAAC # Left flank : GCGGATCCCGTTTCGCGAGATTGCAGCGGCGAAACGGCAAGAGTGCGTCTTGGATCATGGGTTCGCCACCGAACGAGCAAGGTGGCTTGTCCGTTGACCATCCAGTTGGTTCCGACAGGAGAGCCCCTGTCCCACCGCTGGGCACAGCGCCCAGGGGTACCGCCGGCCATGCTCGCCCAACGCCGCACAGTGCGCATGCAGTCGGGCAATATCCGGCGATGCCGTCCGCCAGTCTCAGTGCGGGGCGCAGCGAACACCTGGCCGCCTCCGCTGGGGTGTCCGCAACAGGCAGCACGAACAGGGCAGGGAGCACAGGGGAGATCTGGCGCGGCACGTCCGTCGACCTCAGATCGTGCGCAGCGGCTGGGGGGTCGACGGAGCGGGGTGTGGGGTGTAGTGAGCGGCGGGATGCGGCGGGTGGCGGTGGTGGGCAAGTGCCGAGGCGGCGAGGGAGGGGATGGTGGGCAGGCGTTCGCCGTGGTAGACTAGGGATGTGATGG # Right flank : CGCGCGTTCTGCGTGCCAGCGCGTGGGGGTCAGGCTTAGTGTTGCCCATGCCTATTGGAAATTGCGTCGCCGTGCGCCTCGATGGTGCGATCGCTGGTTTTTGGCCCCTGCTAGGGCGCGATAGCATCCTCCCACCAGCTGCGCGTGCAGGCTGTCCCACATGCCGTTCCGCTCAGCCAATGGTCACGCACAAGCCGACAGCGCACGTCTCCTCTGTGCTGCCTCGCGAGGCCGCGCCATGGGCAACGTGACGCCGCTCGATGGAACCGGAAAACGACGGGCGTATACTCCGATCTGGAACCGGTTCGCGGAGTAATGCCGATTCCGCGAGCGTTGGAGGTTGTTGTATGCGGTATGACTATCGCGCTGCTGCTCCTGGTGTGGTCGAGGCGATGCGCGGCCTTGAACGCGAAATCGCGCAAAGTGGCCTGGAGCGCCCCTGCCTCCATCTGGTGAAGATCCGCGCGTCGCAGCTCAATGGCTGCGCGTTCTGCCTGGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 945669-933176 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMP01000003.1 Thermorudis peleae strain KI4 N675DRAFT_scf7180000000034_quiver.3_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================== ================== 945668 30 100.0 40 .............................. GACCGGTGATTGCCGCTGGTCTCCTGGCCTACCTGGACCC 945598 30 100.0 37 .............................. GGTGCTCCACCGCGACGTGCTCAAGCGGATCCGCAAA 945531 30 100.0 36 .............................. TTCCCCTACGATGACCTTGACGTCGACACGTTGCTT 945465 30 100.0 37 .............................. ATCTTGTGATGGACGCGGCCGACACTGGGAACATGGC 945398 30 100.0 37 .............................. ACGGTGTATCGGAGAATGAAGCCACGCTCAGCGAGCG 945331 30 100.0 38 .............................. AACGCCAGCACCTTCAGGTCGGCGCAGTACGGCCGCTT 945263 30 100.0 37 .............................. CCTCGTTGAGCCGTCCACGTTCGTTCTTGGTCAGCGG 945196 30 100.0 36 .............................. ATCCTCGCTGCTCACGGAATTCACGGATTCTCCGCC 945130 30 100.0 38 .............................. TGATTTCGTTGAATTCCTCCGGAATAGAAAGCGCCAGC 945062 30 100.0 37 .............................. TGGGCGTGGCAGGGCTGGCATGGCAGGGCTGGCGAGG 944995 30 100.0 40 .............................. CAGCTGAACGGGAGATGCGGAGAGTGGAAGCGAGCTGATC 944925 30 100.0 34 .............................. CTTTGATCGTGCCCTTGCCACCGCCCTTGACCGC 944861 30 100.0 41 .............................. CGCGCAAAAGCGCGCAAATGAGGCGGCTGGCACTGACGTGC 944790 30 100.0 38 .............................. TGCTCTATCGTGGCGATACCATTGCCCAGCGCGTCGAA 944722 30 100.0 37 .............................. CCATCAAACTCGTGCTCGATGCGGTCTTCGGACCAAA 944655 30 100.0 37 .............................. TGCACCCCTGGACGGCGGTGCATGACCGAACCTGGCG 944588 30 100.0 36 .............................. AGCGCACCTTCCAGGACCTCGTTACCACGAGCCCAA 944522 30 100.0 37 .............................. CTCGATCCTGCGGGCGTTCTTCGGTGCGCCGTTCGCT 944455 30 100.0 36 .............................. ACATACGCCGGGTCGTGCGGCAGATGCTGCGGGTTC 944389 30 100.0 37 .............................. TAGGGATGGACCTCCCGATACTCCCAGCCGGGCTTGG 944322 30 100.0 39 .............................. TTGGGCCTGACGGCGAGGTCTACGACGGTCATCAGCGGC 944253 30 100.0 35 .............................. TCCTGCCGGCCGCCGACACGACCACGACAACCCTC 944188 30 100.0 38 .............................. TGGCCGTATTCACGACGTCATCCTCTTCTATACCAAGA 944120 30 100.0 37 .............................. CGGTGCCCTGTTTGTACGGGGCACCGTCGATGGCAAG 944053 30 100.0 36 .............................. TGCTTGAGGCGGAAGGCCTGGCGGTGCCGAGGACGC 943987 30 100.0 36 .............................. CCTAGATCGGTATATCCCCCTTCAGGCGGCTCTTGG 943921 30 100.0 39 .............................. TGGGCGTGGCAGGGCTGGCATGGCAGGGCTGGCGAGGCA 943852 30 100.0 38 .............................. GAGGCTGAGGTGCGGCGATGGGTCGGCGAGATCGACGA 943784 30 100.0 37 .............................. TATTGCACGACGGGCGGCACACACTTGGCAGAGCGGG 943717 30 100.0 36 .............................. AGCTGATGCCGGGGCCGGGCCGTCAGCCTCAGAAGA 943651 30 100.0 35 .............................. GTCAGCGGGACATCCTGATAGGGGCGCCCCCAGCA 943586 30 100.0 36 .............................. TCATCGAGCTCGAAGGCTTCTCCACGGCACGCGAGC 943520 30 100.0 35 .............................. ATGATCCCGAGGGCTATGTGGCGGCGGTCGTCCGT 943455 30 100.0 36 .............................. TGTCCGATCCGATGGGACGTGGACGACCTGGACGGA 943389 30 100.0 37 .............................. CGATGCCGAACAATCCTCGTTCGCTTCACCAGAAACG 943322 30 100.0 41 .............................. GGGCTTGACAATGTACCTGTGATTGAACCAGTGATATTCAA 943251 30 100.0 39 .............................. GTCCATGTTGGTGCGGATCGCGCGACGCTATCTCGGTGA 943182 30 100.0 38 .............................. CCTTCAAGCAGAACGAGCGCGTCACGCTCGTGGGCAAG 943114 30 100.0 38 .............................. TCTCCGCGGGCACGGCCACGGCGCGGGTCTCTGTCTCG 943046 30 100.0 40 .............................. CTCTGAGACGTTCGGATGCGCCTTCAAGTTGATCTGAAAA 942976 30 100.0 36 .............................. ACACGACCTCTTGTTTCGGCGTTGTCCCAGGTTGTC 942910 30 100.0 36 .............................. ACCGATTTCGAGAAAGCGGGCCACAATCGGCCCGTA 942844 30 100.0 36 .............................. GTGAATTCGTTCACTACGGAATCCCACTGCCCGGCG 942778 30 100.0 36 .............................. GGATGTGCTCCTCAGGCGACTCGGGGCGGAGGCAGC 942712 30 100.0 35 .............................. AAAAAGCTCGGCTTCACCAAGCGTGCACGCATTCC 942647 30 100.0 36 .............................. GTTCTCCCGGTTGTTCCTCGGTGACATACCGGACAT 942581 30 100.0 36 .............................. TCCGGCGTGAGCGACAGGGCCTCACGAGCGTCCTGC 942515 30 100.0 41 .............................. TCGAGATAGGAAAACAACAAGTCCTCGGCGAGCTTCCAGGC 942444 30 100.0 35 .............................. AGAGTAATCAGAAAGTCGTCAATATCGGGACAACC 942379 30 100.0 38 .............................. CACGGTCATCGCACGCGGCGCCTTCTGCCACGCCTTTG 942311 30 100.0 37 .............................. GCCGGAGGCGTGCGCGATGTGGAGCAGGCCGTCGCGG 942244 30 100.0 37 .............................. TTGCCGCTGTTGTGGCGGTCGCCTTCATCGCGTGGCA 942177 30 100.0 39 .............................. TGCTGAAATCGTTCGTGGCGGTAGCAACCCTGGTTCCCG 942108 30 100.0 38 .............................. CAGCGTGACGCTGCTCTTCCTCCACGCCTCCGGGCATT 942040 30 100.0 39 .............................. ATCGCGATACCTTTTGCCGAATCCTCCGGGACGCCCAAT 941971 30 100.0 36 .............................. CTCGACACCGGCACGGCGTGGCAGCCGTTCCTCCCG 941905 30 100.0 36 .............................. TAGCGATAAGAATCATCGAGAAGACGATACTTCTCG 941839 30 100.0 37 .............................. ACCATCCCCATAACCATGATCAGGGGGAATGGTTCGA 941772 30 100.0 37 .............................. CGCATTGGTCAGGGAAACGAAATCGAGCAGTGGGGTA 941705 30 100.0 37 .............................. TGCGGCAATCACCACGTGCATCAACTGGATTCCGATA 941638 30 100.0 38 .............................. TTCGAAGGTTGCGCCGTGGAGGGCGTTTTCGATGCGTC 941570 30 100.0 40 .............................. CGGACAAGGTACCGCCAGTACTCGAGAAATCCTCCACCGA 941500 30 100.0 40 .............................. CGTGATCGACTGGGACGGTGTCCGCATCGAGCTTCGCGAC 941430 30 100.0 38 .............................. TTCAAGATACTGCCAGAACCGTTCTGGATTGACCTTCA 941362 30 100.0 39 .............................. TAGTGTTCGTGCACAGCGTCCGGACACTGTGTCCGTACA 941293 30 100.0 36 .............................. AGCAATCGCGCGATCGACGTCGATCAGCACGAGGGC 941227 30 100.0 37 .............................. AGGATGTTATCGAGGTCGTGACGGCGATTCGGGCAGA 941160 30 100.0 38 .............................. ACGGCCGTCATCACGGCCATAACCCAGTTTGGCGGTCA 941092 30 100.0 39 .............................. TCCGTTTCATGCAGCAACACGAAGGGAGAACGACAATGG 941023 30 100.0 36 .............................. TCGGCAACCCAAGCCAACCTTGGAAGCGCCGACTCA 940957 30 100.0 35 .............................. GCCATACCCGATTGTAGTCCGAGCCACGATTCATG 940892 30 100.0 37 .............................. GAAGTGCTTCGGGTGCAGGCTTGGCATCGTGCACCCG 940825 30 100.0 35 .............................. TCGAGCAACCGATAGGGCTCTTTGTTCGGGCCCGA 940760 30 100.0 37 .............................. GTCCTGGAAATTCCTGGCCGATACATGACTGGCCACG 940693 30 100.0 35 .............................. TCGCGATCCGATCCGCGCGTTCGTGGGAGAGAATG 940628 30 100.0 37 .............................. CGCCGATGGCGCGGAGTTGCTTGACGGCGGCATTGAT 940561 30 100.0 37 .............................. AGCGAGCTGGCGCGCCTCATCAATGAGGGCGGCGAGG 940494 30 100.0 40 .............................. AGCCAAGCTTTTTCAAGAACGAGGAACTCGCCGCGCTCCC 940424 30 100.0 38 .............................. CCATCAACGGTGACCGTACCAACGCCAATGGGGAGTGC 940356 30 100.0 36 .............................. TGCCAAGCCAGCGCGTCGCACCGTACACGTCCAGGA 940290 30 100.0 38 .............................. GCAGAGACGGGCGATCGTGCCGCTCGCCGTGGTCATGC 940222 30 100.0 36 .............................. GACCTTCGCCGTCGCGATCCACTTCCCGTCGGCATC 940156 30 100.0 38 .............................. TGGCGCCTGGCGTATCGGCGATCTCGATGCGCTTGGCG 940088 30 100.0 38 .............................. GACCACCGTCATCTGTCATCATGGGAGACCGATCCTTT 940020 30 100.0 41 .............................. AGGAGCGGGTCAAGGCCGTACCGTTCACAGATGCGCAGGAC 939949 30 100.0 35 .............................. CTTCTCCCGGCCGCAGTCCCGTCATGAGCATGAAC 939884 30 100.0 38 .............................. CGCCGTTTGGCGCGGTACGGAGTGACGTGTGAGGCTGT 939816 30 100.0 38 .............................. CTCGAGGTCGGTGATGACGGTCTGCAGGTGCTCGAGGA 939748 30 100.0 38 .............................. GACCCCTGGCGGTCAGATTCGATCGCCAGGGGGCTTGA 939680 30 100.0 37 .............................. TAACCAGACAGTCGAGCAACTCACCCAGGTCGGCCCA 939613 30 100.0 37 .............................. TAGCACCCGCCATATTCCATTGTCAATACCCCCCGGC 939546 30 100.0 35 .............................. TCGGCACAGCGTGGGTACGCCGTGGGCGGCGCATC 939481 30 100.0 38 .............................. AGCGCAATTCCGCCGACCACGCCGCGTGCGCTGTCATC 939413 30 100.0 35 .............................. TCGTGCCACTCGGCGACGTCGCCGAGTGGGTGCTC 939348 30 100.0 37 .............................. CCAGCAAGCGGCGATTGGCGGGGACGACATTTCCTGG 939281 30 100.0 37 .............................. GCCACTTGCCTACACGGCGCCAGACGGCACCTTCCGC 939214 30 100.0 36 .............................. TTTTCGACATCCTTCTTCATGGTGTCCAGACCTCCA 939148 30 100.0 35 .............................. CTCACCTTCACCGTGGAACTCCAGGTGAGTGGCAC 939083 30 100.0 35 .............................. CTTCGTCCGCGCGCGGTCGTTCGGGAATGGCGGCC 939018 30 100.0 36 .............................. ACGGCAGAGGAGCGGCCGCCAGTGGCTCGCCTCCAA 938952 30 100.0 40 .............................. GAGGTCCTCGGCGTCGGAGAGCAAGCTGGTGAGCGTCAGG 938882 30 100.0 35 .............................. ACGACTACGACAGCGAGACGCTCTTCGCCCCGGTC 938817 30 100.0 37 .............................. GAAGGAGGCCGACGATGGACAGTGACCCAGCATACGT 938750 30 100.0 37 .............................. CACCCAGAAGTACATCACGCGCTGTAACTGCCCCTCG 938683 30 100.0 39 .............................. GCCAGACGCGTGGGCGATATGCAAGAGCCCGTCCCTCGT 938614 30 100.0 42 .............................. ACCTGATGCAGGCCGGGGTGTTCGCCGGGACGAGCGGCGCGA 938542 30 100.0 40 .............................. CCGCGTCAGGGCCGTCGCCGCGTTGTTCAGCTGGACGCGC 938472 30 100.0 36 .............................. ACCGTTGCCTGGGGGAGGTCGAGTGCTGCGGCGATC 938406 30 100.0 36 .............................. GTGGCCAAGCGGTTCGGGGCGATCGAACACCTCCCC 938340 30 100.0 35 .............................. TTCCCTCCGGCGACACCAGACACGACGCCCCCGGG 938275 30 100.0 38 .............................. GATGACCCCCAGCGGCGCTGGCACCGCCGCTGGGGAGA 938207 30 100.0 40 .............................. CCCATGCTCAGAACGCGCCCGTGGGATACCCGGCGTATCG 938137 30 100.0 38 .............................. AGTCGCCGGGGCAGACAACATCTGTGCGCCCCATTGCC 938069 30 100.0 36 .............................. GCGATTTCCACGTCAGTCATGGCCGTTCTTCTCCCT 938003 30 100.0 36 .............................. TGGTCTGATGGCAAGCCTCCACGTATAGGTACTTCC 937937 30 100.0 40 .............................. CATGACTGGTCAGGGAAATTCATGACCGATACTTGGCCAG 937867 30 100.0 37 .............................. GACACTCCGAAGGGGGCGGATCGGCTCGAGTACCAGA 937800 30 100.0 38 .............................. GGCGACGCGTCCGTCGCGGCCGACCAGGAAGTGGGCGG 937732 30 100.0 39 .............................. TCGGCCAGGCGATCGCGTTCGGCTCGACGCCGAGCGCGG 937663 30 100.0 36 .............................. TGGCTTGCCGATTGCCATCACCACGCTCGGGCTCAT 937597 30 100.0 36 .............................. TGTCGATCCCGAACCACCAGCACTCCGTCACAATCC 937531 30 100.0 35 .............................. CCCGCATGGAGACGCAGCTCGATACGATGTTCTCG 937466 30 100.0 38 .............................. GCGGCTCGCCAGCAACGGTAACCCTCACGGTGGCTGGA 937398 30 100.0 35 .............................. ATATTCCCCGTGTCAGTCGGCGTGAGCGTGGCAAA 937333 30 100.0 35 .............................. GGTCGCCGGGCGGCCAATGTGCCCGGCCTGCGCGG 937268 30 100.0 37 .............................. ATGGCGAGCGGCCTCTACTCGGGTACCAAGAAGCTCG 937201 30 100.0 35 .............................. TCGAGCAACCGATAGGGCTCTTTGTTCGGGCCCGA 937136 30 100.0 38 .............................. GGGCCCTCGCCCGTGTTCTTCTGGACTGGGCGCTCGCG 937068 30 100.0 36 .............................. AGGAAGCACGGCGGCATCCAGGGTACGGCTATCTTC 937002 30 100.0 37 .............................. ACCGAATCCGCCACAGTCACACCAGTCGTCGGCATTT 936935 30 100.0 36 .............................. TGGCTTGCCGATTGCCATCGCCGCGCTCGGGCTCAT 936869 30 100.0 40 .............................. GCCATCTTCTGGCATGAGAGCCAGTTTGGGCGTGTCGGCA 936799 30 100.0 36 .............................. GAGTGAAGGAAAGGGGGACGGCAATGCAGGTGTGGC 936733 30 100.0 36 .............................. TCGCGATCCGCTCGGCGCGTTCGTGGGAGAGAATGA 936667 30 100.0 36 .............................. TTGGCGACGCCAAGAGTCTTCTCGACCGGATTCTCG 936601 30 100.0 38 .............................. TTCCCGGCCTCTATGGCTGCGAGGAGCCGGGCGAGCTG 936533 30 100.0 36 .............................. AGATTACCGAGATTGGGAACGTTGACCGCTACGGTT 936467 30 100.0 36 .............................. TCTGGTACCATTCGTGTGCGTACCAGACCTGCAAAA 936401 30 100.0 38 .............................. TTTTTCCGCCAGGGACACTGTAGCACGACTGTGCCCCG 936333 30 100.0 37 .............................. TTATCCCCCCGACTGGGGCTTGACACTGTGGTTGCAC 936266 30 100.0 40 .............................. CCACCACCGTCCTCACTCCCAATGCTCGGGGGCAGTCTCC 936196 30 100.0 37 .............................. GAGGCTGTCAAGGCCGTGAAACCAGCGACGTGGGTCA 936129 30 100.0 39 .............................. TACGCCGTCGGTGGGTATAACGGGACGAACTACCTCTCC 936060 30 100.0 39 .............................. GACGCCCAGGGCGAAAGCCTCGTTGGTGGAGAGGTGGTT 935991 30 100.0 36 .............................. GCCCAACAGCATCTGCGCCAGCGCGTCCTCAATGTC 935925 30 100.0 36 .............................. TTCAATGTGGCCGTCCTCGGAGACTTGAGGACGGCC 935859 30 100.0 42 .............................. CAGCGCAAGGCACAAGAGATCGCAAGTACGGTCAAGAATACG 935787 30 100.0 35 .............................. CTCTGCTTCGCGTCCGAGCAAGATCCGCGCGGCAC 935722 30 100.0 37 .............................. TTCGAGAGGCGATTGATCTGTTTCTTGCCCGCTATTC 935655 30 100.0 36 .............................. TCCAGGACCTCAAGAATACCTGGGAAAATATCTGGA 935589 30 100.0 37 .............................. CTGGGCGACGCAGAGACTGCGTGCGCCCTGAACTTGC 935522 30 100.0 122 .............................. ATCGGCGTGGTCCCATCCCACACCTGCTCCACGACCCGCGCCCGGTGCGCACGGAAGACGGCGTCCTGGTCGATCTGCGCAAGCGCCGCCTTGAGATCGGCAACCCACGACGCCGGCTTCAG 935370 30 100.0 36 .............................. TCGCCTCCTCGTCGTGTGCGACGACTATGGGCGTAT 935304 30 100.0 37 .............................. CCGCGATGACGGGAAGCCACACGTCGTCCAGTGGTTC 935237 30 100.0 36 .............................. ACGCTCGCCGGATATCTATCGGTAGGACACGCTTCT 935171 30 100.0 37 .............................. TGACCTCGCAGCCGCCTGGCTCCAGGCTCGCTCGAGG 935104 30 100.0 38 .............................. GATCATGCCAGCGACAATGAGCCAGGACGGCCACCCGT 935036 30 100.0 36 .............................. CCCATCGCGGTGTCGTAGGAGGTGTCGTCGCCGGGC 934970 30 100.0 42 .............................. TCATTGAAGAAGACTTCCCGCTCGAAGATGTTCTAACAATCA 934898 30 100.0 41 .............................. GTGCTCCTGTCGTTCCTTCACCGCCCTGCCCCCGCTGTACA 934827 30 100.0 41 .............................. AAGAGACACGACAACCCCCCCATTCGTGCGACTCAGCCAGA 934756 30 100.0 38 .............................. ACTTCTGGCAGCCCGTTCGGCTGGGCCGCCAGAAGATC 934688 30 100.0 38 .............................. GTGCATCCGCCGCATCTCCTCCGCCGGAACACCGTTGA 934620 30 100.0 36 .............................. CACTCGTCGAGATGCTGAAGCAGGCCGGGCTGCCAT 934554 30 100.0 39 .............................. CCGCTGGCTGCGTGACCCTGCCGTCCAGGCATCCATCCG 934485 30 100.0 38 .............................. CGGTGAGCGTCAGCACCCCGACTGCGCCAGCCTCCACG 934417 30 100.0 42 .............................. CCGGGGTCCTCGTCTACATCGACCCGCGGAAGCAGCGGACGG 934345 30 100.0 38 .............................. TGACGGCGAGCACCCCATCGACCCGGATGAAGAGCGAG 934277 30 100.0 36 .............................. ACAGGAGTTCTGCGGCAGCCTTGTTCAGCCTGCCGC 934211 30 100.0 36 .............................. AGGGCCGCACGCCTGATTTCGTGAGGAACAACGTTC 934145 30 100.0 37 .............................. TCGCCTGCTTGTCGTCGTCGACGACTTTGGCCGAGGG 934078 30 100.0 37 .............................. ATCTTGAATCGACTGCTGGCGCACAACGGAGACCCAG 934011 30 100.0 37 .............................. ATGAGTACTAGGACGTTGGGGGGATACGATGCCGAAA 933944 30 100.0 37 .............................. CTTTGACGCCGTTGGGCAGCAGACGCTTGCCATTCCA 933877 30 100.0 38 .............................. GCGTCCTTGCGCGTCAGCGTACACTCCCGGCGCCACTT 933809 30 100.0 36 .............................. TGTTCCCAGCACGGACGTTGTCTATCCAGGCTTGAT 933743 30 100.0 36 .............................. ACCCAGTCGCCTGGTCTTCCAAGGAAATGACGAAGT 933677 30 100.0 38 .............................. GCGATATCCTCAATGACATAGGAAATTCCTGCAACAAC 933609 30 100.0 35 .............................. ATTGACGACGCGGTGAACGTGACGGCGGTCACCAT 933544 30 100.0 37 .............................. TTGCTGGAGGTGGTCGATCACGGCATCGAGATGTGCG 933477 30 100.0 39 .............................. GACGTCGTCGTTGATCTCGAGGTCAGTGGCGATATTCCA 933408 30 100.0 37 .............................. GGGGAGTTCCTTCCCCGTCTTCAGCTGCCGGTGCCGG 933341 30 96.7 39 ............T................. CGTCCACGCGCGGAGAGCGGGGAACCACGCGTCGCCATC 933272 30 100.0 37 .............................. TCCGCACGATCAGGGCTCCTTCCCGCAGCGCGGACAG 933205 30 90.0 0 ..............G.G............A | ========== ====== ====== ====== ============================== ========================================================================================================================== ================== 185 30 99.9 38 GTTTTGCCCGTACCTATGAGGGATTGAAAC # Left flank : TGTGAGCTCGTTGCACCCGATGCGGTGCCGAGAAGGGAGTGACGGGCCTGGCTCACCTGTTCGCTGCCGAACACGCGGAGTGCTCCATTCGTCGACCATCCAGTTGGTTCCGACAGGAGAGCTCCTGTCCCACCGCTGGGCGCAGTGCCCAGGGGCACCGCCGGCCATGCTCGCCCAACACCGCACAGTGCGCATCCAACCGGGCAGTATCCGGTGGTGCACCCAGCCAGGCCCAGCGTGAGGCACCGCGAACAGCTGGCCGCCTCCGCTGGCCTGTCCGCAACAGGCAGCACGAACAGGGCGGGGAGCGCAGGGGAGATCTGGCGCGGCACGTCCGTCGACCTCAGATCGTGCGCAGCGGCTGGGGGGTCGACGGAGCGGGGTGCGGGGGCGGGATGAGCGGCGGGATGCGGTGAGCGGCGGTGGTGGGCAGGTGCCGAGGCGGGCAGCGGAGGGAGTAGCGGTCAGGCGTTCGCTGTGGTAGACTAGAAATGTGGTGG # Right flank : CGGCCGCCCTCCAGCGCGGAGCGTTAACGCAAGGGCGGGTAGATGCGCTGCGCGTTGGCAGCGAGCACCATCCCCGCCACTTCAAGCGCGTCAGCAAGCGTGAGCAGGCCGTCGTCGACCAGGCCACCCAGCGCTTGCGCAAGCGCTTCCCGCCACAGTCGTGCCGCCAGCCACTGGAACTCCGGTAGCTCATGCCCATCGGTCGAGGCCAGAAGCTTGCTCGCCGGCGCAAGCCCCAGCGCTGTCCGAACAAGATGCGCCCCTTCGCCCGCGGCTAAGGGCAGCGTCAGCCCAAGATCAACGTAGACGTTCGGATAGATGCTGGCCAGATAGGCTGCCTGACGGACAAAGGGATAGCAGTGCAGGAGGACAATCGGCACGTGGCGATAGCGAGCCTCTCGGAAGATCGGCCGCAGGAGGGTCGGATCGCTCTGCGGCAGGACAACGTCGTCATCACCAAGGCCGACGTGAACCTGCACCGGCCGGCTCAGCTCAGCAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //