Array 1 65357-66104 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOHJ01000055.1 Pseudomonas aeruginosa strain 105857 LT19_contig000055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65357 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 65417 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 65477 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 65537 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 65597 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 65657 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 65717 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 65777 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 65837 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 65897 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 65957 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 66017 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 66077 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 76517-74629 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOHJ01000055.1 Pseudomonas aeruginosa strain 105857 LT19_contig000055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76516 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 76456 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 76396 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 76336 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 76276 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 76216 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 76156 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 76096 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 76036 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 75976 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 75916 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 75856 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 75796 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 75736 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 75676 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 75616 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 75556 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 75496 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 75436 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 75376 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 75316 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 75256 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 75196 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 75136 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 75076 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 75016 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 74956 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 74896 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 74836 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 74776 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 74716 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 74656 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //