Array 1 128658-126921 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAFN01000021.1 Escherichia coli strain KCJK1916 NODE_7_length_228713_cov_16.283_ID_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128657 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 128596 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 128535 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 128474 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 128413 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 128352 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 128291 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 128230 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 128169 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 128108 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 128047 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 127986 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 127925 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 127864 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 127803 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 127742 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 127681 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 127620 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 127559 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 127498 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 127437 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 127376 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 127315 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 127254 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 127193 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 127132 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 127071 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 127010 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 126949 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155301-154357 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAFN01000021.1 Escherichia coli strain KCJK1916 NODE_7_length_228713_cov_16.283_ID_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155300 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 155239 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 155178 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 155117 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 155056 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 154995 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 154934 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 154873 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 154812 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 154751 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 154690 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 154629 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 154568 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 154507 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 154446 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 154385 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //