Array 1 2133-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRE01000682.1 Pseudanabaena sp. 'Roaring Creek' contig-172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2132 36 94.4 37 ..T................T................ TGGAAGCCCATCTAGTCTTAGAAAGCGCATATGTCAT 2059 36 97.2 38 .T.................................. AAGCAATTGCAAACTGTTTCTAGACGCTTTTCGGTGAA 1985 36 100.0 37 .................................... TAAATGCCATAACCGATCCCGCCATGAACACGAATAA 1912 36 100.0 39 .................................... GAAATTTGTTTCTATTTTTACCCCTATGGAAAGTGGCGA 1837 36 100.0 37 .................................... AATGCGGCGATCGCCTGTTCAGAAAAAACGCTATCTA 1764 36 100.0 36 .................................... TATTTTTACCGATCTGCGCTGATTGGTGATTGCGGT 1692 36 100.0 39 .................................... ATCCAGCTTCGCGAAACCTCTCGGCAAAACGACAATCAA 1617 36 100.0 35 .................................... ACAACTCAATTAACTCATGCTTGCGGAGAGATGAG 1546 36 100.0 35 .................................... TCTAAAGCGACCTCAGCATCAATCAATATTCTTTT 1475 36 100.0 35 .................................... TTGCTTGTTCAGGTGTGTTTGTATCTTCATGCTGT 1404 36 100.0 36 .................................... AACTCTGGTTTGTTTATTCAAGAAACTACTGAAAAT 1332 36 100.0 38 .................................... CAGCAAATCATAGATAGGAAGCGCTTTAAACGCTGCAA 1258 36 97.2 35 .....................A.............. ATCAGTGTAAATTGGCTTCCTCTGCAAGAGTTTGA 1187 36 100.0 37 .................................... ATAGAGATAAAATCTTCGGAGAATGAAAGTAAAACGA 1114 36 100.0 36 .................................... TCCAGAGAATTATTTTTAGAGGGAATGAAGTGTGAT 1042 36 100.0 37 .................................... GAGCTAGAAAATCTGCTTCTGGATCGCCGCTTCCAAA 969 36 100.0 37 .................................... AAAAGCGCTAATATCAGCGCTGATAGAAGAGAGAATA 896 36 100.0 38 .................................... TGTTTCAAGTGATACTGAGCCATCGTCTCTTTTTTAAT 822 36 97.2 36 ..........................A......... GTTAGTCTTTTTAGCTGCTGCCATGATTAATTGTTG 750 36 97.2 35 .....................T.............. GGAATAAACCAAAGTCGAATAAATAGCAATATCTT 679 36 100.0 39 .................................... ATAATTGACCGATATCTTTAACCTCTACTACCGCGATCG 604 36 97.2 38 ...................G................ TCTTGAGAAGCCTCAAAAGCTAGAGCCAGAGCTATATT 530 36 100.0 37 .................................... TTTCGATGTGTTTTATTAAGTTATTGTTTTGCGACTT 457 36 100.0 35 .................................... GCCTTGGTAACGCACTATCTGATTGGTTTTATACA 386 36 100.0 36 .................................... TGTTGAACCTGAAGTTGATTTTGAACAACAATCTTA 314 36 100.0 38 .................................... GTCGCGGTGCGCGAACCAGTCGTGAGTCAACTGATATA 240 36 100.0 36 .................................... TCAAACTTCTCATCAATCCCAACAACAATATGTCCA 168 36 100.0 38 .................................... TCTCATGATCGACCTCACTGTAAATATTTACACCTATT 94 36 75.0 0 .......................C..TC.CAACTC. | ========== ====== ====== ====== ==================================== ======================================= ================== 29 36 98.5 37 TCCCCTACTCGCTAGGGGACGCGATCGATTGGAAAC # Left flank : TGTTTCATAGTTTTAGAGCAGTAGAAGGTCTACTCTCAATGTGGTGTGATGAGTTTCATTTCGACAAAAAAGAAGGCAAGAAGATTAAATTATCTTCTGATTTTACTTTACCTTCTGGGAATAAAACAAGATCGCTTAATGCTTACGGTCAAGGTCTTTATTTTGCTCTCGAAGCCTTTAAAGGAGTCGATGTAAATTCAGATACTGATATTTGGAACTTTGGGAATAAAGTCTTTGACAAAAGAAATGAACTTTTTCATAAATTGGAGGGATTGCAGGATAAAAATTCAGTATTTAAAGCTTGGGAGATATTTAATGATAGCGAAGAAGAATGGAAAGCAAGAGTTCTTAATTGCCTCAACTTTATATCTCAAGAAGAATTCAAATCTATAGAAGAAGCTAGTTTGATGTCACAGGTGCATAAGGATTTGGGGGAGGTGATTAAGAAGATTACCAATTAGCTGATGATTTATTTCCAGCTTTGGTATTATTAACATTAG # Right flank : CTTTAGGATTGCTATAGCAAAGTGAGAGATAGCTCTAGACAAATCAAAACTCCAAGGAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCTACTCGCTAGGGGACGCGATCGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 3-632 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRE01000614.1 Pseudanabaena sp. 'Roaring Creek' contig-1028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 100.0 39 ..................................... CAATCCTGAGAATCCGAATCAGATCTATGTGTATTCCAG 79 37 100.0 34 ..................................... TTCTCACGCCCAAACAAATATCTATACTTCTTGA 150 37 100.0 40 ..................................... TTCTATTTTTTCTGGTGCATGAATTTCAATTACGCCACCT 227 37 100.0 35 ..................................... TTGCGACAACTGGCTTGTAGCTTTTAGCAATCTTT 299 37 100.0 35 ..................................... CCAATTTTGATTCATGAGAATCAGAAATTGATTGA 371 37 97.3 40 ......................G.............. CTAGCTGTATCGGTGGATGATTGCGCAAAATCTGCGGCAG 448 37 100.0 34 ..................................... AGATAGTTAGTCTCAACAAAATACAATTTCAGCT 519 37 100.0 40 ..................................... TTTCCTTCAACTCCTTCTAATTTGAGAATAGAAGGAATAA 596 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 99.7 37 GCTTCAAACCATCTAAAACCCTTCTAGGGATTGAAAC # Left flank : GAG # Right flank : ATGGTATTTAGCCTCAATCTCTTGCCATATCTAGCCGCTTCAAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAACCATCTAAAACCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 439-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRE01000624.1 Pseudanabaena sp. 'Roaring Creek' contig-1066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 438 37 100.0 37 ..................................... TCAAGATCTCGATAACCACGATACCGCTCTACTTCTT 364 37 100.0 38 ..................................... GGCTCGGATAAAATTTTAGATCCTTCTCAACCATTAGG 289 37 100.0 35 ..................................... TCGCCAAAAGAGGAAATGGGAGATGTTCAAGAGTT 217 37 100.0 36 ..................................... AATTTGCCTCTCTGCCTTTTTGATGCTTTAGGGATC 144 37 100.0 36 ..................................... CAATGTTGCGATCGCTAATCCGCAACAAATCACAGA 71 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 100.0 37 GCTTCAAACCATCTAAAACCCTTCTAGGGATTGAAAC # Left flank : ACATCTAGATTTCCGATGTTTACTACAAGATCTCAATTCGCTTCAATCAGCCCAAATCTGCTACAATTGCGATCGTTCGCGCAACTGTACCTTGAAAACTAAATATCATATAGTTTCTAAACGCGGGC # Right flank : CAGGCGATGCGTAATCTCTCCTGATTGATTTTACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAACCATCTAAAACCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 8256-5347 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRE01000464.1 Pseudanabaena sp. 'Roaring Creek' contig-712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 8255 36 97.2 37 ....T............................... AAGCTTCACAGAATACAGACATTTTCTTTTCAGAGAA 8182 36 100.0 41 .................................... GTAATTCTAGTTTTAGTTTTAGTTCTTCAGAGTTTATCTCT 8105 36 100.0 36 .................................... TAACAATTGTTAGCCTTAGCCTTGGTCTTGATAATA 8033 36 100.0 35 .................................... TAGACCAGAACACAAGAACCAACTAGTTAACACTG 7962 36 100.0 40 .................................... CCCCATGTTCATGGGTCTTGGAGCTAAACTTGTTGTTACT 7886 36 100.0 36 .................................... CAAAGTAGTTTTGTGTGTCGATGAGATTGACAAAGC 7814 36 100.0 37 .................................... CTAATACCCTCTCCATGCTATTGAGCGCTTTACCGCC 7741 36 100.0 37 .................................... AGTGCTAGTTGTGCCGATTGGGGTAACTGATTCATCG 7668 36 100.0 35 .................................... ACTGAAAACCCTTAATAGATAGGGTTACATTTAGA 7597 36 100.0 37 .................................... TAAAAACTCGTTGTATCTTTGCCATGCCGTGTTATGT 7524 36 100.0 41 .................................... AGCGCTTTGCTACCGCTTGTAGCGACAGCTTTGTATACTGC 7447 36 100.0 38 .................................... TAGCCATTACCTTTAACCTTTAACCTTGTTTAACCTTA 7373 36 100.0 38 .................................... TATTATTATTTAGATGCCTATTAATTTGATTAGAATTA 7299 36 100.0 34 .................................... GCTTAACTGCCTTCTTTGCCTCAGAGCCATAACC 7229 36 100.0 35 .................................... TTCAATCCTGCAAATTACGCCAATAAATTCATTTG 7158 36 100.0 34 .................................... TTTAGAAAGTCCTGTAGCTGTCTATCACTTTCAA 7088 36 100.0 39 .................................... GTTCTTCGATTGTGCCATGTACTGAGTCAACCAATTCAC 7013 36 100.0 36 .................................... AGATCACTTTCATACTTTGCGACAGTTCGCAAAGCG 6941 36 100.0 36 .................................... TGTTTCGCTAAACCAGCATGAAGAACAGGTTGACAA 6869 36 100.0 39 .................................... CCTCGTTTCTGATGCTCAATACAGTAAAACCAGTGAAAG 6794 36 100.0 35 .................................... CTAATCTGTCCGCTTTGATAGCGTCATACATTGTC 6723 36 100.0 36 .................................... ACAATAGCTTCCCTCTTATCATATTCATCAGAGGAT 6651 36 100.0 43 .................................... CACGCAGAATAGTGTGCCATGAGGATACAAGAGCGTCACCAGC 6572 36 100.0 38 .................................... CGATCTCTCAGAACCAGCTACTAAAAATACTGTTTTCT 6498 36 100.0 39 .................................... CATATGAGGCTTTTGGTGTTGCTGCCATGTGTTTTATTA 6423 36 100.0 39 .................................... AAGGCTGGCTGATGCCTTTGGCTATACTAGAGAAGTCAA 6348 36 100.0 38 .................................... CTTGAGGATTACCGTAGCTACCCAATTTTCAGCAGCTT 6274 36 100.0 38 .................................... AAAGCTTTTACCAATTGGATCGCTAGGGTGATTAATCG 6200 36 100.0 46 .................................... TTGGGGCAATTCTTTGAATATTGGGTGTAGTGGTAAGCCATGCCAG 6118 36 100.0 40 .................................... CTCAAAGTTCTCATCAATCGGAATCGTAATCACAAGTTCA 6042 36 97.2 39 .....................A.............. CATCTTGAATAGCCTTTTTGAACTGTTGATGAGCCTTCT 5967 36 100.0 36 .................................... AGGGCTTGTCTGAACTAAAAGAAGCTAGATTAGTAT 5895 36 100.0 37 .................................... GCTTTCTGATTAGTTGTTTTATGTTAGGGATAGCATT 5822 36 97.2 41 .....................T.............. CCAGACTATCCGTTGAATATGTCGTTGATTCCATGTTGATT 5745 36 100.0 36 .................................... TACAAAATGGGCTGCATGACCATCAAATTGAGGGAT 5673 36 100.0 36 .................................... AATGTAACAGTGATTGAGGTTATTGAGTCTAATCCG 5601 36 100.0 39 .................................... ATCCCTGTAAGCGCTCTTAGAGCTAGGGAACTAATGAAG 5526 36 97.2 38 .T.................................. CAAATAGTCATAGTCATTTGGAGTTTCATCAGGAAAGT 5452 36 100.0 34 .................................... ACAGCGAGGTGTTGTCCACCAACCAGACGGCGGT 5382 36 97.2 0 .....................A.............. | ========== ====== ====== ====== ==================================== ============================================== ================== 40 36 99.6 38 TCCCCTACTCGCTAGGGGACGCGATCGATTGGAAAC # Left flank : GGATTTGCCAAGTTTGGGTAAGGTTCAAGCTAAGTTTCAAGCGCTTTTCCCAAATGCTAAGTTGATTCTGGATAAAAAAAATGATGTAAAAGAGGATGTCAAAAAGGAGATTAAAAATTTGGAGGAGCGTGGTAAGGATGAGGTCGATAAGGAAATCAAGAAATTAGATCCGCGAGATCTAGATAGAAAAGAGCTGGATAAATTGCCAATCCGCGAACCGATTAGGGATGTTTTACCAAAATTGCCTCCCCGCCCATAGTCGTTTTTCGATCGCTGATGCTTGGCTCTGCCTCAATCCGAGCCGTTTTGTATCATGGCTTTGCGATGGGTTGGCGTTTGAGGCTGAAATGACGTTTTTGCGTGTTAGCCCTCGATACTATGCTGGATATGGGTTTCAAGGCTTTTTTGTGTTTGTATTTTTTGTTTTTTACCTGTTTTTTGCGGAGGGTTCGCAAATGATGTCTAGACTCAATGCGGTGTAAGGGTGCTAATATGGGTAC # Right flank : TACTCCTCAACATACTCACTATAGTAACGTAAGGGTAAGATAGGACATAATCTTAAAAGAGGAGAGCAAGAAAAAGCAACGAAAATGACGGCAGCCTACAATATCGATTTACGAGAGAAAGCAGTATCCGTGATCGACAGAGGGGAAAAAAAGAGTCATGTCTGTCGAATATTGAATATCAGCAGAAATACGTTAGATCAGTGGCTAAAACGCCGAGAAGAAAAAGGAAGTCTAGCTCCCGCAGAGTATCGACGGGGACCGAAACCGAAGATTGATGACCTAGAAGCATTCAAAGCATTTGCGGAAGCCAATGGACATTTAACCCAAAAAGAAATGGCAGAAAAATGGGGCAAACCAGTCAGTCGAGTAATTATTGGCAAAGCAATGCGTAAGCTCAATTTTACCCGTAAAAAAACTACGGTTATCAAGAAAGAAACGAGCAGCAGCGACAAGAGTTTAAGCAAATGATACGCACTCGTACTGAAGAAAGATGCGTATAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCTACTCGCTAGGGGACGCGATCGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 783-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRE01000609.1 Pseudanabaena sp. 'Roaring Creek' contig-1006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 782 37 100.0 36 ..................................... TTGCCTGTTTCCCGTATTGCGATCGCCCACCCAACA 709 37 100.0 35 ..................................... TAGATCACGGTATTGATAATTGGCTAACCTGTGTA 637 37 100.0 34 ..................................... TTATGCTCGTCACTCATTACATACCCGTCGGCAA 566 37 100.0 41 ..................................... TTATGAACACACCAACTTTAATACAAGGCTATCCCTTTCAA 488 37 100.0 34 ..................................... TAAAGGCATTTGGACTGCAACTAAACTTAATGGT 417 37 100.0 38 ..................................... TAATACGATCACCATGAAACCCATCAAACCCACCTCTA 342 37 100.0 34 ..................................... ATTGAGGCGATATGTAAAGCGTCTGGAGAAAGCG 271 37 100.0 38 ..................................... ATTTAAAAGTGCAGTTGGTCAGTACAATAACCAATTTA 196 37 100.0 39 ..................................... TTCGTTCCACCCCATTAAATAAGTTCGTAGCGGACTTAA 120 37 100.0 43 ..................................... AATTTTGGGAGCCGTTGCCAATGATGCGTTTACCAGTGCATCG 40 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 11 37 100.0 37 GCTTCAAACCATCTAAAACCCTTCTAGGGATTGAAAC # Left flank : G # Right flank : CCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAACCATCTAAAACCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 407-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRE01000600.1 Pseudanabaena sp. 'Roaring Creek' contig-985, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 406 37 100.0 36 ..................................... GCGAGCAGTGAATTAATGCCCTGAGCAATGAAGATT 333 37 100.0 34 ..................................... AATTTCCTAGCTTATTGTACAAATCAAATATCGC 262 37 100.0 38 ..................................... CCCAGCATAAGTAATTCCGCCGCCCTCACCTTTCTTGA 187 37 100.0 33 ..................................... TCGTCGGCGAGCTTGCGCCTTCAAATAATACGA 117 37 100.0 40 ..................................... TAAATTCGGTATACGCTTTAAGCTTTGCAGCAGCAACCCG 40 37 97.3 0 A.................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 99.5 36 GCTTCAAACCATCTAAAACCCTTCTAGGGATTGAAAC # Left flank : CTTCTAGGGATTGAAACATCGGGTTGCGATAGGCGATCGCAATACCCGTATAT # Right flank : CACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAACCATCTAAAACCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 3-695 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRE01000736.1 Pseudanabaena sp. 'Roaring Creek' contig-992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3 37 100.0 39 ..................................... AGGCGATGCGTAATCTCTCCTGATTGATTTTACGAAGTG 79 37 100.0 35 ..................................... CGATTGAAGCTCTTTTTGTCGGCATCATTAACGAC 151 37 100.0 35 ..................................... CCAAATATTATATTGCAGGTGATCGCCTAGAGCCT 223 37 100.0 35 ..................................... ATATTAAAAGGAATAACAACATTTGGCTTATTCAA 295 37 100.0 35 ..................................... ATATTAAAAGGAATAACAACATTTGGCTTATTCAA 367 37 100.0 37 ..................................... GGTATTCCTGTGCTTGTGAATGAGAATCGTTATCAGT 441 37 100.0 38 ..................................... CTGTGTGGAGTCAATCTTAAAATTGACAATGATGGGGC 516 37 100.0 34 ..................................... AAGGATTCTATTGAAACACAAATCTCAATTTTTA 587 37 100.0 35 ..................................... GAAATATGGATCAAGCCATAGGCAATTTGAATAGG 659 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 100.0 36 GCTTCAAACCATCTAAAACCCTTCTAGGGATTGAAAC # Left flank : GAG # Right flank : TT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAACCATCTAAAACCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 30-1011 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRE01000611.1 Pseudanabaena sp. 'Roaring Creek' contig-1016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 30 36 100.0 37 .................................... TCGGCAGTGGCTTTGTCGAATGCGATCTTTGCTGCTG 103 36 100.0 37 .................................... TAATTAGTTGCCTATGGCATTGCTAACGACTCACTAG 176 36 100.0 35 .................................... GAAATTCGAGAAAGCTTTGGCGAGATCGCAGGAAG 247 36 100.0 40 .................................... TCTTAGGTAAGGCGGCGATCGGGGCGGGGCTAGCTGTTGG 323 36 100.0 35 .................................... TTAGTTTATGAGTGCTGATACTACTGACAAGCAAG 394 36 100.0 40 .................................... ACGAATGACATTAGTTGATTGGCAGATACAACATTATTGG 470 36 100.0 36 .................................... ATTGCAGAGGGACAACCTCGGTTCGTTGTCATTGAG 542 36 100.0 38 .................................... TCAGCACTATGCCAAGTTCGCCCGATCAGGCATGGAAT 616 36 100.0 33 .................................... GCAACGGAGAATACGAGCAAACCGAAAGCCATA 685 36 100.0 35 .................................... GGCTTTGCTTTGTGCCAATCCTCTCTTCAATCTCC 756 36 100.0 36 .................................... TTTTGGCGATCGCGAAAAACAAAAAACTAAACTGGT 828 36 100.0 37 .................................... TTTTGAAACTGCCGAGAATTGAGAAAGATGCCAGCCG 901 36 100.0 39 .................................... ATCATTTGGGCATTAGTGGCGAGATGGAAAACCATGCAG 976 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 14 36 100.0 37 CTTCAAACCATCTAAAACCCTTCTAGGGATTGAAAC # Left flank : TTTCTACCCAGTAGCCAATATCAGGACGGC # Right flank : ATGGGTGGCTAAAATTTGATTGAATACCTGTAACATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAAACCATCTAAAACCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA //