Array 1 99429-92465 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPK01000046.1 Methanosarcina mazei strain 3.F.T.1A.4 scaffold6_1_size162937-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 99428 37 100.0 31 ..................................... TTGATCTTAAACTGGATTCCTTTTCTGATTA 99360 37 100.0 36 ..................................... TTATAAATATTGACATTATGGACTCCTGAAATCAAG 99287 37 100.0 37 ..................................... CAAGTTCCCCTGCTATGATAGATGAGTCTGTTCCGGG 99213 37 100.0 34 ..................................... TGCGTTTGATAATAACCTGAACGAAAATCACCGG 99142 37 100.0 34 ..................................... CCATTTTTACACCTGTTATTTTACCAGACTTTTT 99071 37 100.0 34 ..................................... CCATCAGGTCTGATCCTCTGTATGAGTTCTCTTT 99000 37 100.0 34 ..................................... GGACATACAGGCTTTGCTTTCGCTGTCGTGCCGT 98929 37 100.0 35 ..................................... AGTATCTTGTTTTCTAATTCCAACCTCTTATTTTT 98857 37 100.0 37 ..................................... CAAGGTCATATACTCTGTTTTTTAGTTCTAGAATTTC 98783 37 100.0 35 ..................................... CATGGATCTCTCTGTCTTCGTAATCTTTAAGTGGT 98711 37 100.0 33 ..................................... TTATCAAGATGTTTCCAAGAGTAATAAATCCGA 98641 37 100.0 35 ..................................... CAGTCTCGCTCATCTTTAGTTTCCTCCTATTTTAC 98569 37 100.0 37 ..................................... AAAATGTATTTTCCAGCATCAGTAACCATAGCAAGAA 98495 37 100.0 37 ..................................... CTCTCTGAAATTTCTTCGTTTTCCTCTGTCATTCCGA 98421 37 100.0 36 ..................................... GACGGGTTGCTGCTTCCAAAAGTTCGGGAAATTCAA 98348 37 100.0 34 ..................................... TTACTCTGCTTTCTCTATTCGGTTTATATGCAAG 98277 37 100.0 36 ..................................... CACATTAAAATAATGAAATCTGTATTTGCTTTCAAC 98204 37 100.0 34 ..................................... TAATATAAGTCGCCTTGACATAGAAAAATTAAGG 98133 37 100.0 36 ..................................... ATAGACCGCACAAAAGACGACGCACTAGAAAAGCTT 98060 37 100.0 36 ..................................... TGTTAAAGAGGTATGGTTAGAGAAGGGCGTGCCGGA 97987 37 100.0 35 ..................................... GCAGATGGCGAAAAATGTTATTTAGTTGATAAGAA 97915 37 100.0 33 ..................................... CGGACTTAAGGAATCTATTGTTTGGATGGATTA 97845 37 100.0 35 ..................................... CCCTTCTTACCATCGTTCAAGCCTCCTGCTTCTCT 97773 37 100.0 35 ..................................... CACTTGCTAAAAGTGTGTATCCATTCCCTAGATCC 97701 37 100.0 37 ..................................... GACGACTTGAAGAAAGAGCTTGAAGAGCTTAAAGAGG 97627 37 100.0 37 ..................................... TCGACAATATTTGAATCCAGATTTGGATTTAGTTTTT 97553 37 100.0 35 ..................................... ATTTCTCAGCCGGGTGTCCTGCTTCGACAAGTATC 97481 37 100.0 36 ..................................... ATAAGGACGCAAGACCGGACTTAGGCTGTCTTCAGG 97408 37 100.0 38 ..................................... TAATAAGTTAGGTGGTCCGTGTCAGGCATTATAAAGTG 97333 37 100.0 35 ..................................... TATTCCTGATTCGAACAGGAATCATAGCCTAACTT 97261 37 100.0 38 ..................................... TAAGTCGTTTGCGGAAGCAAAACGGGACATTGTGAGAA 97186 37 100.0 35 ..................................... GGTATTCCATATATAGTAATAGTAATAATAGTATT 97114 37 100.0 37 ..................................... CCGTAAAAGTAGCTCCACTTGTAAAACATGTAATTGC 97040 37 100.0 36 ..................................... GGTAAATTGATGCTGGAGCTGCACTTGTACTGAATA 96967 37 100.0 37 ..................................... AAATCAGGTTTTGATCTCTAACCAAAATCTTTTTATT 96893 37 100.0 36 ..................................... ATCAGTCGCACCAGCCAGCCCACAAGTCAACAAAAA 96820 37 100.0 34 ..................................... TGTGAGCGTATAAGGAAGTGGTCAAACCTACAGA 96749 37 100.0 35 ..................................... TGGCCCAGTAACTACATCATCAGCAAACATAATTT 96677 37 100.0 36 ..................................... TTCAGTTCGTCTTTGCCGGGATCTCAAAACTCAAAT 96604 37 100.0 35 ..................................... ACATGAAAGCTATACAAAGCTGATGCCAAAAATAT 96532 37 100.0 34 ..................................... AGGACGTTGCAGGCGCGACGGATAAGGCTGCTAA 96461 37 100.0 36 ..................................... TTATAATCGTAACCCTTGCGCCCGTTCATGATCCAG 96388 37 100.0 38 ..................................... TAACTGTATTCATTTTCAAGGAACCGCTTCAGTTCCGG 96313 37 100.0 34 ..................................... AGGAGGAGGATACATATCTCAGTTGCTCTATCAA 96242 37 100.0 33 ..................................... TTCCAATGAAATTGTGGTATCCCATTCCTAAGC 96172 37 100.0 36 ..................................... CGCATTTTGTATTCCTCCCATAGCGTGCAGTATTAT 96099 37 100.0 36 ..................................... CATCTAATTTAGGATCAGACCAACGTATCAAACCGC 96026 37 100.0 35 ..................................... ATAAAACAGTTGATGCATACGCTGTGCTTTGTGAA 95954 37 100.0 37 ..................................... TCAAGTCCATCAAATTCATTTGATCTGCATTCGTGTC 95880 37 100.0 34 ..................................... TGAACCGCAATTCCGGCTCTTCTAGTGACTCCGG 95809 37 100.0 35 ..................................... AAGATATTATCTCTTATCTCCTCTTGCATTTCTGT 95737 37 100.0 37 ..................................... TGAAACATACTCTCATCGGGTAGCTGCAAGAGTCCCT 95663 37 100.0 34 ..................................... TGAACCGCAATTCCGGCTCTTCTAGTGACTCCGG 95592 37 100.0 35 ..................................... TGATAGAATATGTACGCATATCCAGCCAATGCCGC 95520 37 100.0 37 ..................................... TACTCACATTAACAATATCGTCCAACCTTTCGACGGC 95446 37 100.0 38 ..................................... ATGACAACGTTAAACCCTCCCAACCAATATCAATAGAA 95371 37 100.0 32 ..................................... ACGAACTGCCAGCCGTAGAATCAGCAACTTAT 95302 37 100.0 38 ..................................... CCTTTTTATCGAGCGAAGTAACTTCAACTGAAAAAAAA 95227 37 100.0 37 ..................................... CCATGTGGTGAAGTCCGTAGCTGGCGTTTGTTGAATC 95153 37 100.0 34 ..................................... GCAGCTTCAGGAGACAGTCTGACAGTAACAGTTT 95082 37 100.0 36 ..................................... TACTCTTCATAGAAGTCTTTCAGGCTTTCAATATCG 95009 37 100.0 35 ..................................... AAAAAAAGTCAAGTAGATATAAAAGGGAAAATCAA 94937 37 100.0 36 ..................................... TACTCTTCATAGAAGTCTTTCAGGCTTTCAATATCG 94864 37 100.0 35 ..................................... AAAAAAAGTCAAGTAGATATAAAAGGGAAAATCAA 94792 37 100.0 35 ..................................... ATAAGGTCACGTCTATTTATGAACTTTTGAGAACA 94720 37 100.0 37 ..................................... AGAGCTTCACAAGCGCAATCTCTAGCTCCCTGAACAA 94646 37 100.0 36 ..................................... GGATGACTCTCGATTACATAGACGAAAATCCTGAAT 94573 37 100.0 35 ..................................... CTGAAACTCTTCCTGGAGATGGGACTGATACAGAC 94501 37 100.0 36 ..................................... ACTTTAGGTTGAGCCATTTGCTGAACACTAAGATCT 94428 37 100.0 37 ..................................... AGATATATCTGGCTGTCGTAAACACGTTCCGGTTTTT 94354 37 100.0 35 ..................................... TGATTCTTGGGGGCCGGCTTTCTGGCTGGTTGGAA 94282 37 97.3 36 .....C............................... TCCATCCTGTTTTCAAACTGCTCTACAATAAAAGCA 94209 37 100.0 35 ..................................... CTGCACAACTAATGTACTAATTTGTACTATGAAAT 94137 37 100.0 38 ..................................... CATTGCAGACTGATGGTTATGTCTGAGCGATAATTATA 94062 37 100.0 37 ..................................... TTTGTACATCCTGATATTTTTGACACATCTGTTCTAC 93988 37 100.0 35 ..................................... ATTATCATCAGTGTACTTTCAATGACACTGATTCT 93916 37 100.0 35 ..................................... AAGTAGTCTATGAAGATAAGGATTTAACACAATTC 93844 37 100.0 34 ..................................... ACATAACCTAACATAAGTTATATATACTATTAGG 93773 37 100.0 35 ..................................... TTAATATCTGCATCATACCAGGAATAACGGTTATA 93701 37 100.0 35 ..................................... AAATTGCATCGGCTGAGAATGTGTTAGAATACCGG 93629 37 97.3 33 ...........G......................... TAAATTAAAATTAGTAAATCCTTATACAGATGA 93559 37 100.0 35 ..................................... GATTTTCTGCTATACACATCTGTTCATAGTTGTTC 93487 37 97.3 37 .....C............................... TGTATGACTTCGTGATTGCAAACAGCCCATTGCTGAT 93413 37 97.3 35 .....A............................... ATCCTCCTGGTATGGGTAGCTGGATTTTTCTTTTT 93341 37 97.3 35 .....A............................... TATTTTCCTTTCAAATCATCAATTTCAGATTCAAA 93269 37 97.3 35 .....A............................... CCTGATACTGCTACTGGTCTCTGTTGATAGAGTGA 93197 37 97.3 36 .....A............................... AACGCAGTGGTGCAGGCTCTTATAGAGGTCGGAAGT 93124 37 97.3 37 .....A............................... AAAGCGGTTCTGGATCGTCTCAAAGTTCTGACGGGGT 93050 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 92975 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 92900 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 92829 37 91.9 0 .....A.............................GT - Deletion [92793] 92791 34 78.4 36 ---..A..AGT..C....................... CTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 92721 37 81.1 35 TG...A..AGT..C....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT T [92706] 92648 37 83.8 34 .G...A..AGT..C....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT T [92633] 92576 37 81.1 36 GG...A..AGT..C....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC T [92561] 92502 37 78.4 0 TG...A..AGT..C......................G | T [92486] ========== ====== ====== ====== ===================================== ====================================== ================== 97 37 98.6 35 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : TTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [44-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 15931-22919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPK01000084.1 Methanosarcina mazei strain 3.F.T.1A.4 scaffold47_1_size29277-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 15931 37 100.0 36 ..................................... ATAGGAAGGGTAAGCACAGTTTAAGCCTCCTTCCAG 16004 37 100.0 34 ..................................... TTGCTTTGTAGCTTCCGTTACTTGTTTTCATGTA 16075 37 100.0 37 ..................................... ACTCTAGGGTCCTGCTCATAATCACTTCCAGAACATC 16149 37 100.0 36 ..................................... AGTCATCTACCCTGATTGATTGATGGGGGCTTGTTA 16222 37 100.0 36 ..................................... ATCCCTCTACTATCAATGATGCCCACGGTTGACGGA 16295 37 100.0 33 ..................................... TAGTAATTGATATGGCAGGGGTCCCAAAAGCCA 16365 37 100.0 34 ..................................... AGGGGACGTTCGACGCTTCAACGAATGCCGGCGC 16436 37 100.0 35 ..................................... AGAAGACCGAGGTGAAAATGAATTGAACTCTGAAC 16508 37 100.0 36 ..................................... TATTATTTTCAAGAGTGTTCGCCATTTCATAAACTG 16581 37 100.0 36 ..................................... ATTGTTGCAGGCTTAAACCCGTCCCGGTTAGCCTGT 16654 37 100.0 34 ..................................... ACTTCAAAAACATCGCCCGGAGCTATAAATTTAG 16725 37 100.0 36 ..................................... TGATGATCGAGAAGTAATGCTTACTATCCCTGAACA 16798 37 100.0 37 ..................................... AAATATCATATGCAGGAGCAGAGTCTTCAAAAACGGT 16872 37 100.0 37 ..................................... TCAAGCTGCACCCCAGGTCCTGCACTTTCCCGCGCCG 16946 37 100.0 35 ..................................... TTTTAAAAGTCAAATATTCCACTTTTCCAGGATCG 17018 37 100.0 36 ..................................... AGTGTAGGGGTATCGAAGAGAACATATACATCTAAG 17091 37 100.0 37 ..................................... CTTGTGGGGTTCCAATAATCAAAACCTGCCCGGAGAT 17165 37 100.0 34 ..................................... GGAAGTCCTCTTTTGGGAATTGCTTTTTGAATGC 17236 37 100.0 38 ..................................... AAATGTCTTCGACTTTTTTTAATTGGTCTGCAGATTCA 17311 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 17385 37 100.0 34 ..................................... CAAACTTTGTTAAGAGAGGGCTTACCCGTTCAAA 17456 37 100.0 35 ..................................... CGAATGGCTCTCTCTCTACCAACAAAGACCAAGTG 17528 37 100.0 35 ..................................... ACCATCCGTTACATCTCTTTGGTAATGTGAATTCT 17600 37 100.0 35 ..................................... TTTGACAATAGTACAATTTTTGAACCTGGTGTACC 17672 37 100.0 37 ..................................... ACTGTGCCAGAAATGAGAACATCGAGACAATTATGCC 17746 37 100.0 35 ..................................... TGTCAATAATTTATGCGCGGAGAAAAAACGGGGTG 17818 37 100.0 35 ..................................... TTCACTTTCCTTTTTCTTTACATAAATTTCAAACT 17890 37 100.0 37 ..................................... TGTTTTCAACATAATGAAAAACTTGGAGCCATCTGTA 17964 37 100.0 34 ..................................... TGAATACGAATTATGAAAGATTAAATCCAGATGG 18035 37 100.0 37 ..................................... TAAATGTCTGTAAAACCATATAGTATAATGTCAGTGG 18109 37 100.0 35 ..................................... TCACATATTCGAGTTTTGTAAGTTCACTAATTACA 18181 37 100.0 35 ..................................... AGGGTTTTAGAGGTCATTTTCACACCCCGAAGAAA 18253 37 100.0 34 ..................................... ACCGTGTCAATCGCTTACGGTTTTAAACAGCAAA 18324 37 100.0 36 ..................................... CCATGTGTGCAGCTCCGGGGTCTATATTCTATTCAC 18397 37 100.0 34 ..................................... TCTTGAGCGAGGGCGTTTCCAACGTCCACCTGTT 18468 37 100.0 36 ..................................... CAGGAGATGCTACAGCAGAAATTAAACTCGATGATT 18541 37 100.0 36 ..................................... TAGGTAATCCCGGCATGAAGCCCACACTCTGAAATA 18614 37 100.0 34 ..................................... CTGACCATATGTTTGCTCATAATGGGAGTTCGGG 18685 37 100.0 36 ..................................... GTGGATATAGAGTCTGAAAAATAATCATGTTGCTGA 18758 37 100.0 36 ..................................... AAGTCCTCTGTTGTTCTTATATGCTCCCGCGAAAGT 18831 37 100.0 35 ..................................... TGGTTGACGTATGCGGTTCTACCAGGAACATAATA 18903 37 100.0 34 ..................................... ATTAATCCCCCCTTCTCCCTTCAGCTTGAACAGA 18974 37 100.0 35 ..................................... TTTCGGCATCTTTGATACTCATCTCAAGAAGAACA 19046 37 100.0 37 ..................................... TATACATCATCAAATAATTAACAGTGATAAAAACATT 19120 37 100.0 36 ..................................... TGTAATTGTCATGGATCAGGACATTATCACAATTAT 19193 37 100.0 36 ..................................... AGAATTCGATTCAGGACAACATGGTATAATATCGAA 19266 37 100.0 36 ..................................... TCATTAGCCTTGTCAAGCTCCCATTTAAAACGGAGG 19339 37 100.0 37 ..................................... TTCGGATGATGCAAATTTTACAGACGATACCATCGCG 19413 37 100.0 35 ..................................... TAGATTTCTAGGGATCTATCGAAGTCTTCAGTATT 19485 37 100.0 36 ..................................... AAGAGCTCATTGATTCAAGTATAAGGCTGTGGGACT 19558 37 100.0 36 ..................................... TTTTTGGTATGTCCTGGAGCTGCCAAAATAACACAG 19631 37 100.0 36 ..................................... ATACAGGTTGACTGCCCGGAGTTCAAAACGCTTGAG 19704 37 100.0 35 ..................................... AGCAAAAAGTAAAATCAGGCACTATAAGCATAAAT 19776 37 100.0 36 ..................................... TAGGATCATAAATTATTATTTTCCCCGCTGCATCTG 19849 37 100.0 35 ..................................... TAACAATTTGATTACAGGTTGTGGATGGGGAAACA 19921 37 100.0 37 ..................................... TTGGGTTGGCGGGATCATCTCAAGCGGGTACAATAAT 19995 37 100.0 36 ..................................... AAATTCCTTCTGAAGAATTGAACGGGGCTTCAGTTG 20068 37 100.0 35 ..................................... TTTCCTGGTTTCAGCCATTCGGGCAATTAGATTAA 20140 37 100.0 35 ..................................... ATTCCTTATTTTCCTCTTAATTTCTCCTCTCACTT 20212 37 100.0 34 ..................................... ACATATTTTAAAGGGAAAAAAGAAGATAAGTAAA 20283 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 20357 37 100.0 37 ..................................... GAAGTCGTCTTTTCACATCGTAAAGTATTGCTAGTTC 20431 37 100.0 36 ..................................... GTCCCAGACAGGAATAATAAACCCACTCTCGCACAA 20504 37 100.0 34 ..................................... CTCTCGAAGAACCTTTTTTTTGTTTTCCCATCGG 20575 37 100.0 38 ..................................... TTCGTTATCTTCCGGCTAATTATGCCTCTCACGTCCAA 20650 37 100.0 35 ..................................... TTCCCCGCTCTATCTCATCTAGAGCTACCTGGACG 20722 37 100.0 37 ..................................... TACATGGTATTAATATGGAACCAAAAATCCCCCCACT 20796 37 100.0 35 ..................................... TCAGGAAGAGGGTTTTACTCATGCTCCTGTGATTT 20868 37 100.0 34 ..................................... GAATTCAGAAGAGGATACATTGCCATCATGGCAA 20939 37 100.0 36 ..................................... TGATGATAGAGAATACGAAATCGAGAGTTTCAAACG 21012 37 100.0 35 ..................................... TACTGATGACTTTGATGATATTGCCGACTCTACTA 21084 37 100.0 34 ..................................... TCATTAAATGCTTTTCAAGACTGGTATTATCAGG 21155 37 100.0 36 ..................................... TATATGATTAGTGTATAGTAAGAGTATTGAAAAGCG 21228 37 100.0 37 ..................................... ATACAAGCTAAAGTATCTAATTCTACCTCTACTACAC 21302 37 100.0 35 ..................................... GTTGCAGGGTGGGGAGATGGGACACAGCTTAATGA 21374 37 100.0 34 ..................................... TTCCTAGTCTTAGATCGGCATACCTGAGGGCCTT 21445 37 100.0 33 ..................................... ATCAATCGCGGAATCCCTTAAAATTCTGGCAGC 21515 37 100.0 35 ..................................... TCTGCTGGGCCGGGGTTCAAAATAATCTCATCAAG 21587 37 100.0 35 ..................................... AATATTCTGAAAGGTTGCAGGCTGAAGACAGATGT 21659 37 100.0 34 ..................................... CAACAATTGGGTTACTATTTTGTGTGTTGGTGGA 21730 37 100.0 35 ..................................... TCCTGGGGCTTCTTATGGCCTCTGTGGTCATGTTA 21802 37 100.0 35 ..................................... CTAAAATAGTAATGATAGTTTCATATGTATATATT 21874 37 100.0 36 ..................................... CATGTTTGAAGGACGCAACAGCTATGTTACGCCTGC 21947 37 100.0 37 ..................................... GTATCTACCCCTTCTCTATCCCATTTGTGTGGTGCCT 22021 37 100.0 34 ..................................... TTAACCTCAAAAACACCTAAAATCTCACAAGCTG 22092 37 100.0 37 ..................................... CTTAGGGATATGTTTAGCTCATATATAATGTATATGA 22166 37 100.0 37 ..................................... ATTTGCAATTGTATATAGTACAAAGTTATACATTGAA 22240 37 100.0 34 ..................................... TACTTTATATAGCTTTCTGCGTCTGATTCAGAGA 22311 37 100.0 31 ..................................... TGTCACAATTGTAGTGATATTAATAGCCCGT 22379 37 100.0 34 ..................................... TCATCAGAAAGCCCGCGTGAATACTTCATTTTCT 22450 37 100.0 34 ..................................... TTGCAGGTTTCACCGGTTATGTCACATGTTACAG 22521 37 100.0 35 ..................................... CGGTTCAGGACTCGGTAGAGCACTATTCCCGAAAG 22593 37 97.3 35 ..................C.................. TCTGAGGAGACCACTAAAGCCAGTCGGACCCACTG 22665 37 97.3 36 ..................C.................. AATGTATACGTCCTATATTAACAGGTATAAAAACGG 22738 37 97.3 36 ..................C.................. ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 22811 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 22883 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ====================================== ================== 97 37 99.8 35 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //