Array 1 108175-106251 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDV01000001.1 Salmonella enterica strain BCW_2650 NODE_1_length_553545_cov_4.05166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108174 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 108113 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 108052 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 107991 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 107929 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 107868 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 107807 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 107746 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 107685 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 107624 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 107563 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 107502 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 107441 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 107380 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 107319 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 107258 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 107196 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 107135 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 107073 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 107012 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 106951 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 106890 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 106829 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 106768 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 106707 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 106646 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 106585 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 106524 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 106463 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 106402 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 106341 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 106280 29 89.7 0 A...........TC............... | A [106253] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125559-124433 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDV01000001.1 Salmonella enterica strain BCW_2650 NODE_1_length_553545_cov_4.05166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125558 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 125497 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 125436 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 125375 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 125314 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 125253 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 125192 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 125131 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 125070 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 125009 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 124948 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 124887 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 124826 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 124765 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 124704 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 124643 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 124582 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 124521 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 124460 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //