Array 1 88212-91413 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSIM01000001.1 Bifidobacterium pseudocatenulatum strain AM33-6 AM33-6.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 88212 29 100.0 32 ............................. TCGTCAACGTCGATTCCCTGTTCGGTCAGTGT 88273 29 100.0 32 ............................. CGACAATTACGGCCTAAATTTGTACGGCGACA 88334 29 100.0 32 ............................. GTATCACGCCAATCACGCGGCAACTCGCAAAA 88395 29 100.0 32 ............................. AATGGTAGCGCCTTGGCTCTCGCGAACAGCGC 88456 29 100.0 32 ............................. GGCGTTTCGGGCCGCTACAGCCCAAGGCCAAT 88517 29 100.0 32 ............................. ATGCGGCTATATTCATTGGCGAGCGCGTCACG 88578 29 100.0 32 ............................. GGTGACGACAAGCCCCAACCCGAAACCCCAGC 88639 29 96.6 32 ............................T ACGCAATTCGGGCGACTTGTCAACAACGCCAC 88700 29 100.0 33 ............................. ATGATTCGCAACGAGGCATCACCAGAGTACCAG 88762 29 100.0 32 ............................. CGTTTTATGGTCACTTCAGGCAATATTGGGGG 88823 29 100.0 32 ............................. GCATCATTTGGCATCACCAATTTCCCTACCTT 88884 29 96.6 32 ............................T CGGACGGCATACCTCAACTCGTACCGTTGACC 88945 29 100.0 32 ............................. CAATTGCTTGTCTGCGGTTTTTGTGAGATTCG 89006 29 100.0 32 ............................. TGGGAGGTTGCGCCCTCAACCTTGTATTCGAT 89067 29 100.0 32 ............................. GTACGCTCGGCACCGTCCACCTCAGCACAAGT 89128 29 100.0 32 ............................. CGAGTGAGGTTGCCAAGATTTTTTCGAACACT 89189 29 100.0 32 ............................. TTGAGCAATCAGCAGGCCATGCAGTTGGCCGA 89250 29 100.0 32 ............................. GAGCTCAAGGCTAGCCCAATGTCGGCTATGCC 89311 29 100.0 32 ............................. GCGGTCCTGAACCGTTACGGCGCGCTGCTGGT 89372 29 100.0 32 ............................. GCTCATGACACTCACCATCGTGGACGAACAGA 89433 29 100.0 32 ............................. CACAACATACACAAGACACAAGAAAAACACAG 89494 29 100.0 32 ............................. CATTACCGGACGGCAAGGGATTGCCGATCGAT 89555 29 100.0 33 ............................. CACTTTGCAGGCGTATGCGAACGAGGCGGCAGC 89617 29 100.0 32 ............................. ACCATGATCGCCCGCGTCACCCCACTGTTTAG 89678 29 100.0 32 ............................. GCGGTGCGTTCCAGCGATTCCACGGTTGGCTT 89739 29 100.0 32 ............................. AACAAGTGCGGTATATTGAAAGCATAAACAAC 89800 29 100.0 32 ............................. GACAGCGGCAAGGCCGTAATCATCTCCGACTA 89861 29 100.0 32 ............................. GAATCGTCGGACAGGTTGTTGCGCATGCGTAT 89922 29 100.0 32 ............................. CATCCCATATTGCCTCACCGCCGGCAGCATGG 89983 29 100.0 32 ............................. TGCTTGAGGACGGTAGTTACCGTTTCCGCAAG 90044 29 100.0 32 ............................. TATGTGACGGACGCAGATTCGAAGTCAAGCCG 90105 29 100.0 32 ............................. TGCGCGAGCAGCTTGATAATCTCGCCAAGGAT 90166 29 100.0 32 ............................. AAGGCTGAGGCGTCGTTCCAGCCAGTCGGCAT 90227 29 100.0 32 ............................. GCAGTGCTTTGCCGAGTATGCTCGTAAGGGCG 90288 29 100.0 32 ............................. GCCTCCATGCTAGCTCCACCCGCTGTGATCTT 90349 29 100.0 32 ............................. GGGGTCATATACCGTCCAATCGAATACGATAC 90410 29 100.0 32 ............................. GCTGGATTAGCACGCCGGTAAATTCGTCGCGC 90471 29 100.0 32 ............................. GCGGGTTCGGTGATGCGACTGTGTTTGCAATA 90532 29 96.6 32 ............................T CCATCGGAAACGAGAACGCCACCCACTCGACC 90593 29 96.6 32 ............................T TCGATTTCGGCTAGAGGATCCAGCCGTACTTG 90654 29 100.0 32 ............................. TTACATTGCATGCCGAAACCAGCGTCTGCTGG 90715 29 100.0 32 ............................. GCGACCTGAACGCGTTCACGGCCGGTGGCGCG 90776 29 100.0 33 ............................. TGCGGGGGGTATCAAAATCATAATCGTTCGTAG 90838 29 100.0 32 ............................. TTCATGATGTCTGGCGCCGTGCTCTCGTAGGT 90899 29 100.0 32 ............................. TCAACAAGGAGAAATCATGAGACATGACGAAC 90960 29 100.0 32 ............................. CCTGGAACGTGTCCCACGAGCCCAGCCAGCCG 91021 29 100.0 32 ............................. CCAGTTGGGTGTGGCCCGGACGGGTCAGCATG 91082 29 100.0 32 ............................. ACGTCGGTGCGCATCACGCTCCATCCGTCGGA 91143 28 96.6 32 ....................-........ AAGGATACGCTGCCCATGATCGTCGGCACGAA 91203 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 91385 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 51 29 99.4 34 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : TAATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTGTTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGTGTCAAAAACATGCCCCCTAAGTGGCTTTTCTCGAAGGGCATGTGCCATATATAAGCGAGAAACTTCAGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCGCGGTTCAGTTCAGATGAACTGGGTGTATGTCCATAAATTTCGACG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //