Array 1 39993-39354 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIWE01000017.1 Escherichia coli strain AF7709 contig_0017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39992 29 100.0 32 ............................. GGTGATTTTGACGTGTAAACCGGGCGGATTCT 39931 29 100.0 32 ............................. GCTACCCCACTGGCGCTTTTTCGCACTGAAAA 39870 29 100.0 32 ............................. ATTTGGCGGCACCAGATTTTGCGTCAGATGAC 39809 29 100.0 32 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACT 39748 29 100.0 32 ............................. GGATCTAACGCGCTGTAAAAATTCCGTGCTTT 39687 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 39626 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 39565 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 39504 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 39443 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 39382 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACTACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60039-58912 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIWE01000017.1 Escherichia coli strain AF7709 contig_0017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60038 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 59977 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 59916 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 59855 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 59794 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 59733 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 59672 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 59611 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 59550 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 59489 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 59428 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 59367 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 59306 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 59245 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 59184 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 59123 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 59062 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 59001 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 58940 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59287-58298 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIWE01000018.1 Escherichia coli strain AF7709 contig_0018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59286 28 100.0 32 ............................ AACGAGCAAAAACGCGCGTACCGGATTGCGGA 59226 28 100.0 32 ............................ ACCAGAATTAATAATCTTTTCATCGTCACGCC 59166 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 59106 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 59046 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 58986 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 58926 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 58866 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 58806 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 58746 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 58686 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 58625 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 58565 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 58505 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 58445 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 58385 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 58325 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 69098-68348 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIWE01000018.1 Escherichia coli strain AF7709 contig_0018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 69097 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 69037 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 68977 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 68917 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 68857 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 68797 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 68737 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 68677 28 100.0 32 ............................ TCATTGGAATACATGAGTTGCGCCCATTTTGT 68617 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 68557 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 68497 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 68437 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 68377 28 85.7 0 ....................T...C.CT | C,A [68351,68354] ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACAGGCAGCTTAGAAACGGCAGAAAAACCGGTCGCGCTAATGGAGAA # Right flank : ACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //