Array 1 396610-395187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABLP010000001.1 Pannonibacter sp. XCT-34 XCT34_ctg001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 396609 35 94.4 30 ...-.......T........................ CGGTGAGTGGCCCGGTGCGCCCTGGGACCG A [396604] 396543 36 100.0 30 .................................... GAAGAAATCCACGACGAGCCGAAGCTTCGC 396477 36 100.0 30 .................................... GCGGGGTTCTTCGCCGCGTCATCGCCGCCG 396411 36 97.2 30 ............G....................... GACGGTCGACATCCCGAGATAGGCGGTTGA 396345 36 100.0 30 .................................... CCACCACCCATTCCAGCGGCACATGCCGCA 396279 36 100.0 30 .................................... AGGCCACCAAGCCCGCCCTGCCGTCCATAA 396213 36 100.0 30 .................................... GCGAACTCGGTGTTGACCTCGCTCGCGAGC 396147 36 100.0 30 .................................... GGTGATTGCTGACTGGCTGGCGATCCTGGA 396081 36 100.0 30 .................................... CGTGGTGTTGAAGGCCAGATGCCGCGCGAC 396015 36 100.0 30 .................................... TCGACCGCCGCAGCCGCCCCGGCAAACTGT 395949 36 100.0 30 .................................... GCAACCCCTCGCCCGGATCGCTGACCCGCA 395883 36 100.0 30 .................................... ACGCCCGCCCCATCGGCCTGCGACGCATCA 395817 36 100.0 30 .................................... GGAACCGGGTTAGTGACCACATCCTTGTTT 395751 36 100.0 30 .................................... CCGATCTCATGCCCGGCATCATGGTCACGA 395685 36 100.0 31 .................................... ATCTCGGTGAGACCCTCGATTTCATCGTGGG 395618 36 100.0 30 .................................... CGGCACGTTGAGCAGCGCCATGCCTGCCGG 395552 36 100.0 30 .................................... GAATTGAAGGCGGTTGAGACGGACGCAACA 395486 36 100.0 30 .................................... AATTTCGGCAGGCAATGATCGTCCGTCTGG 395420 36 100.0 30 .................................... GAAACAATCGCCGCCCTTTTTGTGTCTGTT 395354 36 100.0 30 .................................... GCGGGCCGCCTCGCGGATGAACGTGTGCGT 395288 36 100.0 30 .................................... CAACGCGATGGAGGATGCGGAATGATCTGG 395222 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.6 30 GCCGTGGCTTCCCTACCGATTTCCCTGTGGTAGGCT # Left flank : TCGATCTGACCATTTTGCGGCAAGTCTGTGGCAAGGACTTGCAGGCCCGCTGCCGGCGACAGGTGTTTCAGTCGACCGCTCGCTCGTGGCCGGGGCCGTGAGCCGCTCTCTGTCTGCGGGGGGACGGGGAGACCGTATGGCCGGCGCAGCAGCCTGCTACCCCAAGGGCAGGCCTTGGGGATGCCTGCCGGTGTGTCGGGAGGTGCGGCCCGAGTATGGTCTTGGGGTGGTTATGTAACGCGCGAATTGAGAACCTGGAGGATCCGTCGGAAAGATCCAAGTATGCGCGGACCTAGCGGTTTTCGACAAGTTCAAACGGCCTTCGATGCGGCCTGCTGCGAAGATTTGGCGCGCGGGGCAGGCGGGCACCAATAGTGCTGTGGTGGGCCAGCTCGACGAAAAGGGCTTGGATAGCATTCGTCGACATGCGCATTCGGCGTGGGAATAGTGAAGTAGGGCTATCCCCCTTTCCCGTCGGCGGGTCAGGTGGACATTGTCAA # Right flank : CCCTCCGGCGCAATGCGTTGTTTTGTCGATACAAAAGGCTTCTAGGACGAAAAGAAAATCATAGGAGAACAAGCTGTTCACTCGCCTTGCGCTCGGTTTTGGCTGATTCGCCAACAAGCAGTTGCATTCGCGCATATTGCTTGTCCGTGATCTGCAGCGTACGCACGCTGCCCTTCGGAGGCAGGTTGGATTTGATGCGCTTGAGGTGCTTTTCCACACCTTCCTCCGCACGGCAAATTCGTGCGTACACCGAGAACTGGATCATCAGAAAGCCATCCCGTTTCAAGAAATTACGAAAGCGGGTCGCATTGCCACGTTCCTTCTTTGTCGTGACCGGCAGATCGAAAAACACCATCAGCCACATGAACCGGATGTCCTTGTTCATTGGCGCGGGCTGACCGGGAGTTTGGGCAGGTCTAGCAAGTCTGCGGAGCCATGTTCAAGCGCCTGAAGCAGGCTTTGCGCGACGATCTCCGTGGCATTCAGCAGGCTCATTTTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGCTTCCCTACCGATTTCCCTGTGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGCT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 701864-701110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABLP010000003.1 Pannonibacter sp. XCT-34 XCT34_ctg003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 701863 31 100.0 35 ............................... GAGGCCTGGGAGCAGGCCATTGCCCGCGATCTGCT 701797 31 96.8 33 .........................T..... GACGGCGATGGGTATGCCGAGTGGCGCAAGGTG 701733 31 100.0 35 ............................... GTTGCGGTCGGGAGTGCAGCCAGAGGGGCCGGCTG 701667 31 100.0 35 ............................... CGCGAGCTTGTGAGCATGGTCGGGGGCGTCCAGCG 701601 31 100.0 33 ............................... CGCGATCTCCAGCATCTGCGCCTCGCGCGCATC 701537 31 100.0 35 ............................... ACTAGACACGTGCTGGTATATCGCCCGTGCCGCGG 701471 31 100.0 35 ............................... CGTACCGCCCCACTTCGCGAAACGCCGACCGGGCG 701405 31 100.0 35 ............................... ATCGAGTATGTGCGGCGGATGACGCAGGGCCCGGC 701339 31 100.0 36 ............................... TCGGCGTTTCTCAATGCGCCGATCCGGCATCGCGCA 701272 31 100.0 33 ............................... ATCGACATCACCAACCTGCCGTCGGCCGACATG 701208 31 100.0 34 ............................... CGCATCGCGTCCTGAGCAGTTATGGCGCTGTTTG 701143 31 80.6 0 .C..T..........A.....T....A..G. | AA,A [701117,701123] ========== ====== ====== ====== =============================== ==================================== ================== 12 31 98.1 35 GTCGCTCCCTCACGGGAGCGCGGATCGAAAC # Left flank : CAAAGGGTGCAGTTTTCGGTCTTTGAAATCGAGGTCGATCCCGCCCAGTGGACACAGCTGAAAGCCCGCCTGGAAGGGATCATCGCGCTGGAAACCGACAGCCTGCGCTATTACTATCTGGGCTCGAACTGGCAACGCCGGGTCGAGCATGTGGGCGCCAAGCCCGCGGCGGATCTCAATGGCCCGCTGATCGTCTAGGACAGGTCCGGCAAAGTCTGAAAGCACCCCGGCCTGCGGCTGGGAGCGAGACCAATGCGCTCGAGACCGGCCGGAACCCCAGTGCTTCTCCGCTTGTCACGGCGGCGCACTGGCGGCGCGTCCGCGCGAACCTGAAGCGTGCCTCGAAACCCGCCCTGGTTCGCGCTCACGCCGGTTCTTTGAAAACATGGAAAAAGTTCCGGCGGCCCCGCTCATTCAGCCAGCATCATCGGGCTACAAGGTGCCGCTTCGCGCCGGCAAGCCAATTTGCATTTGTTGTCCCAGCTGATACGACGATACCC # Right flank : GTTCAGGTGCAAGGCTGAAAATCTGAATTATTTCAGATGGCTACAAGAACTGGATCAAATCCGCGCAGTCATCAGGTCCAGAGAATATCGGCCCTGAGAGACTGCTTCCGGGCCACCTGGTGACTGCGCCAGTGCTCAGCCTTTCCCGCATAACCCTCGAAAACAACGCAAAAATCCGGCCGGGGCCGGATCGGGAGAAGGTCTTTGGTAGGGAGAATGGCGGACAGAGAGGGTGTCACCTTCTCTTGTCTGTCCAATACCTTGGCCTGTCTAACCCCCCTTCTGGCGGGTGTTGATTTTGCTGACGTTTTTCCGCGCGTGTCCAACCGGAAAAAGGCCGGGGCGGCGTGATGGCGGACGCGGGCACCTTCGACTTCGCGGCCCTGGCGCGGCCTGTCGCCCTGGAGCTTTACGGCGAGCCGAACGCGCGGTTGTCGTCGGCATCGGAGCTGCGGTTCGGATCGAACGGTAGCCTGAAGGTCGCCGTTGCGGGGGACGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGGGCGCGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 743842-745249 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABLP010000003.1 Pannonibacter sp. XCT-34 XCT34_ctg003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 743842 28 100.0 32 ............................ TGCTGGAACTGGAAGGCGAGATCCTGGCCGGC 743902 28 100.0 32 ............................ GCCATTGGCACCCTTGAAGAACCCGCGCAGGG 743962 28 100.0 32 ............................ ACCGGCGACGATTTTCATAGGCTGACCTCGAT 744022 28 100.0 32 ............................ TGAGACGTCGTGCTGCCAGTCGTGATGCGCTG 744082 28 100.0 32 ............................ ATGTTGGCCTGGTTTCCGCCGAGAATGTGATA 744142 28 100.0 32 ............................ TTGTCGGTCTCCTCCTGAGTGCGGGAGATGAT 744202 28 100.0 32 ............................ TGAAGTACATCTGCCGGTGGCGCGACAAGGGC 744262 28 100.0 32 ............................ TCCAGACAAAAGTCCAGGCGGAAGGGCGATCC 744322 28 100.0 32 ............................ CTGCCTATCCGCTGCCCGCCCTGGCAAAACGG 744382 28 100.0 32 ............................ TTTCGCGCCAGCCCGGTACGGGTCAGCCTCGT 744442 28 100.0 32 ............................ AGCCGGATATGCCGCGCGGGTCAGATTGCGAC 744502 28 100.0 32 ............................ CGTCTGACGGCCCGGCGCGCTGATCACACCGT 744562 28 100.0 32 ............................ AGCATGCACGAGACACACTGGCGCCCGTGGGA 744622 28 100.0 32 ............................ GACATCAGCGCCACCTCCTCGAACACGCGGAC 744682 28 96.4 32 ......A..................... AGCGCGCGCGGGTCGGCGCAATCTGCCTGCAA 744742 28 100.0 32 ............................ CTGACGGGCGGCGCTGGCGATGCGGTGTTTGA 744802 28 100.0 32 ............................ GACGACGTTTGTCGCCGCGACCGACATCAGCG 744862 28 100.0 32 ............................ AGAACGCCTTCGTCGTTGGTGTTGTCGGACCA 744922 28 100.0 32 ............................ TGCTGCGTCGGCGCATTTTCGATTGCGAGTTC 744982 28 100.0 32 ............................ GATGAGTTCGGGGCTGCCCTGTCCGGGTATAT 745042 28 100.0 32 ............................ TCGGCAGCCTGAATGTCCCGGCTGTAGTACGC 745102 28 100.0 32 ............................ TAGCGCCGTCAGGTCTGAGTGTTCTCGGCCTG 745162 28 100.0 32 ............................ TGCTCACGTTTGCACAACGCCGCGCCGAGTTT 745222 28 92.9 0 .........................C.G | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.6 32 GCTCCCCGCCGGATAGGCGGCTGAGAGA # Left flank : GCTGGAACATGACCTTTACCAGGACACGAAAGTTCCGCCGATCCGAGACCAAGGAGATACTCTTCTGCAGGATCGGCGACAGCCTCCAAGACGCGGTCTGGCACCTTGACATGGCACCCGGCACGCGCAGCAGCGTCCTTCGCACGACAAGCCAAGACCAACTCGATACATCGTGCGAGCTTTCTGCCGTCGCCAGCCTTTTTGGCGACCTGCCCCAGAAAGCCTGGCAGGCATTGTCCGGTGGCCAGCGCGACATCGGGCGCGAGGACATCAAGGCCCTGTCCAGGGTCTCAATTCCTGCCTATGGCGAGCCCATCAATGTCGTCATGACCTTTACCGAATTCGCCGGCTTCACCCGGGGAGCCCCGGAGGATCTTTTTGGCCCCTTCGGAAAGTCTGATCTGAAACAGTAGGTTAGACTCGTTCTTTGAAAACATGGTCAGAAGAGCATCTGAACGCTAAGGTGTTCGGACTGCGGTGATTTTCGATTTGAAGGTACA # Right flank : GAAACTTTAGCAGGTTCACAAGATGAAAAGACTTCTCCCAAAGCCGCACCAAGTGAAATTATGATTAGGTTTTTACAAGTATTTCTTATCACTCCCACTGCATGCACCAACTTCACCTTGGCGACTAAACTACGGTGAACGAAGAGCTAATTTGTGCATCTTTTGTTGCTTAGCCCACTCCACCGGAAACGACTGCAACAGCCGCACCAGCGTCACGTCGGGGCCTTGGGTCCCGTCCAGAATTGCCTCGACGAGGTCCGGCGCGAGCAGGGTCAGGCGGAGGATTCGCGTCACGAAGGATGGTGTGACGCCCTCATGGCGGGCAAGATCGGTCAGGGTGGCGAAGTCGCCGGCGTCGAGCATCCGCTTCCAGCGGAAGGCGCGGGCCAGGGCCTTGACGAGGGCGTCGTCCTTGCGCGGCGGTTCTGCGCTGCCGTCCGGCACCCGGATCTCCTTCCGGCCACCGCGCTTGATGAGCCGGAACGGAACATGCAGCGTCA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCCCCGCCGGATAGGCGGCTGAGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 498604-498270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABLP010000004.1 Pannonibacter sp. XCT-34 XCT34_ctg004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 498603 29 100.0 32 ............................. GGCGCTGTCGACCAGGTCATTGCCGATACGGA 498542 29 100.0 32 ............................. ATGCAGCTTGCCGAGGGCGCTGTTGCGCGCCT 498481 29 100.0 32 ............................. GTGGAGTCGTGCGGACAAGATAGGTTCATGGC 498420 29 100.0 32 ............................. GGCCTCCTTGGGGAGTTAGTTGAGGCGGAGAC 498359 29 100.0 32 ............................. CCTATGTGCTGGCCCCGGACGGGCCGGCGACG 498298 29 96.6 0 ..............G.............. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CTCATCCCGGCAATCGAGGACATCCTTCTCGCCGGCGAGCTGCCGCCGCCTGAACCGCCCGCCGATGCGGTCGGGCCGGCCTTTCCTGACCCCGTTGCGTCGGGCGATGCAGGACATCGATCATGATGGTGGTTGTGACCAACAACGCCCCGCCGCGCCTGCGCGGCCGGCTTGCGGTGTGGCTGCTGGAAGTCCGGGCCGGCGTCTACATCGGCACCTATTCCGCCCGCACCCGCGAGATGATCGCCGAACAGGTCACACTGATGATCGAAGACGGTGATGCGGTCATCGCCTGGGCCGCGCCGAATGACGCTGGCTTCGACTTCCAGACATGCGGCCGGAACCGCCGGATGCCAGTTGATTTCGACGGTCTGAAGCTAGTAGCGTTTCATCCGCCGGGCGAAAACGGATCCCGCTCGACCTGACCTGAACCACGCCAAAAAATCGGTAGCATTCTGCTCTTTGAAATTCTGCTGCATGTTCAACGCTCTCCAGGAAGA # Right flank : GCCAGACGTGCGACGACGGACAGGACGGCAAGACGCGGTTGGTCTGCGGGGCACGCCGGGCCGGACATCCGGGCTGCGAAGGGGACCGGGCGTGCGACCCGGCTGCTCCGGATCCGATCCGGGGCACCCCTGCCGCTGCATCTCCTCATGTCCAGTCCGCACCCGTGGCGCGCCTCAGAACGTCGGCGGTGTGCAGACCCACAGGATGCTGGCCGGTTCGCTGCCGATGTTGCGGTAGGAATGCGGGATGTTGGAGCGGAAGCAGAACCCGTCACCGGCCTCGAGCGCATAGGTCTGGTCGTTGAGATCGAGGGCCACCTGGCCTGCGAGCACGTAGCCGACTTCCTCGCCTTCATGGGTGATGGAGCCGCCGGAGCGGCCGCCGACCTCGAGATGATGGATGTTGCATTGCAGGAGGTGGCCCTCCTTGTAGGGGATGATCCGCTCGAGCATGACGCCGGTGGTGTGCCCGGTGCTCCCCTCGAGCGAGATGAACGGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 505632-504993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABLP010000004.1 Pannonibacter sp. XCT-34 XCT34_ctg004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 505631 29 100.0 32 ............................. GTGCGCCACCCCTTGAGCCGCCGCATGAACGC 505570 29 100.0 32 ............................. GACCTGCTGCAGTGGGTCGAGGCCATCGCGGA 505509 29 100.0 32 ............................. CCCGCGTCGAAGCGCTGAACACCATTCGCAGC 505448 29 100.0 32 ............................. TGTCTCCAGCAGCGTTGCGACCAGGTCGGTGG 505387 29 100.0 32 ............................. ACGAGATCCTGATGGGCCCGGATCGGTCACTG 505326 29 100.0 32 ............................. CACCAAGCGACGTTGTTGGTTGTCGAAGCCCC 505265 29 100.0 32 ............................. ATGCCTTGCGCAATTGTTGGCGGGGCCGCGAC 505204 29 100.0 32 ............................. CTCGGGGCCGGCGTCGCCCAGGACACGGTCAA 505143 29 96.6 32 ......................G...... GCCACGAAGGTCTTGCAGCGGATCCAGGCGGC 505082 29 100.0 32 ............................. GCCACCGTCTGGCAGGGCATTGCGTCCGGCGA 505021 29 75.9 0 ..............G..C....GCC.G.A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.5 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CTGTCCGAACTGCGCTGCCGCAGGGACTGGCTCGGCCCGCTGGATGCGGGTGACGATCCGCAGCGCCAGCGGCTGAAACAGTCCTGGCCGGCGTGGGAGCAGTCCATCGTCGTGGCGATCCTGCGGGAGGACGGGCGACTGGACGTGCCGGCTGCGCCGCCGCGTGCCCTTTCCTATGACGCACACACCGGATTGCGCCGCGCGGCGAGGCCCGGTTGACCCGGCGTTGTTTCGGGCTCTGGCCGCCGGGCTGGCCGCTTCTGCCGTGACGGGGGCGCACACGCGCGCTTGCGCAACACCTGCGACGCAACGCAACACCGGCCGCTGCCGGGCCCCGGGAGATGCTGGAGCCTGCCGCAATGGCCCCGCCATCCCCGCCTGCCTCACTTGCCACAGGTCCGCGCCTCAGGCACCTTTCCAACGGCCACCGGGAGCCGCATTTTTTCGGTAGCTTTTCGCTCTTTGAAATTATGAAATGCAATCAGGCACTTCCAAAAGGG # Right flank : AACAGCAGTCTTGTCAAGGTGCGTGTAATTTCTGAGTTGACAACCTTTTGATGCATTGGTGAAACTGACGGTGGTAGGAATTGCAGGACGTAACCGCCTTTCGGGGCGGGATTGTGGGGTGGGGTGAGGCTCAATCTTCTGACGGATGCTTGGCTCCCCGTGCTGTTGCGGTCTGGTGCGAAGGCCTGGGTCAGCCTGCCCGGTCTGGTCGCGCCAGCGTCGGCGCCGTCCGGCAGTGCCCCTGACTATGCCGTGGACTTTGCCTGGGGGCGGCCGGATCTTGACATGGCGTGCCACGAGCTGTGCATCGGCCTTCTCCAGATCTGTCTTGATGTGCGCGATGAGGATGACTGGGCCGCGCTCTGGCGCGGGGCGATGACCGGTCCTGAGTTTGTCGAACGGCTGCAGCCGCTGGCTTTTGCATTCGAGCTGACCGGTGATGGTCCCCGGTTCCTGCAGGATCCGGAGCCCTTCGAGGCGGGGGTTGCTGCGGCCGCGCA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //