Array 1 18651-17296 **** Predicted by CRISPRDetect 2.4 *** >NZ_APSY01000102.1 Neisseria meningitidis 2004085 gnm2004085.contig.101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18650 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 18584 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 18518 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 18452 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 18386 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 18320 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 18254 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 18188 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 18122 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 18056 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 17990 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17924 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17858 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17792 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17726 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17661 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17595 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 17529 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 17463 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 17397 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 17331 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //