Array 1 238374-237856 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYC01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain M-6697 NODE_2_length_717110_cov_160.014092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 238373 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 238312 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 238251 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 238190 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 238129 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 238068 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 238007 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 237946 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 237885 29 93.1 0 ............TC............... | A [237858] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 256241-254688 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYC01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain M-6697 NODE_2_length_717110_cov_160.014092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 256240 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 256179 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 256118 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 256057 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 255996 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 255935 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 255874 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 255813 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 255752 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 255691 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 255630 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 255569 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 255508 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 255447 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 255386 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 255325 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 255264 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 255203 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 255142 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 255081 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 255020 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 254959 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 254898 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 254837 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 254776 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 254715 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //