Array 1 1498-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVST01000035.1 Rothia mucilaginosa strain 138_RMUC 377_218543_3638762_276+,...,201_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1497 29 93.1 32 ............T............A... TACCTCCCGGAACCCAGCTGGCAAATCACGGG 1436 29 93.1 32 A............A............... CGTTGCGGGCTTTCGGGGTCGGTGTTTTGTGC 1375 29 93.1 32 A...........................T GTGGCGCTGATGGGCACTGGTGCGGCTTCCTG 1314 29 93.1 36 A........................A... AACCCGCCGGTACAGTCCCCCCCCCCCGGAGAGTCT 1249 29 86.2 32 .........A..TT..T............ GATTCGGTGGAATTGCGCACCGCAGCGCTAGT 1188 29 93.1 32 ..........T....A............. AACCCCACCTTTGATGAGGTCAAGCTTCAAGA 1127 29 96.6 32 ..A.......................... AACGGCGACCGCTGGAACGTCGAAGCGGTAAA 1066 29 93.1 32 A..................T......... GGGGTGAATCTTCCTTCTCGCCCCGCTAGTGT 1005 29 93.1 32 A.........T.................. GACTGGATGGATTGGCGGGAGAAGAACCCGCG 944 29 96.6 32 A............................ GAGCTTTCGGATTTGGCGTTGACTTTGAAGCA 883 29 93.1 33 ...C........T................ AATCAGACCTATAGGGCTTTCGTCGCGCGCCCA 821 29 96.6 32 A............................ AAGCCCGCGAAGAAGCCCGGCGGGTACTCTCT 760 29 96.6 32 ...C......................... CCGTGCTCGTCAATATGGGTGAGAACCTCGAA 699 29 96.6 32 A............................ CGTGCTTCTGAGCAGAGTCAGTCTCAGGGTCA 638 29 93.1 32 ...C........................C AAGGCGGCATTCGGCATGGGTGGAGACGCAAA 577 29 96.6 32 ...C......................... GGAGGTACCGCCCCCATTAAGCCTATGCTCGT 516 29 96.6 32 ............................T CCAAAGAATCAGAATCAGGACAACCCACACCA 455 29 96.6 32 ............................T GAGAAGCCCCGCGTGGTTCTTCGCACGCGAGT 394 29 100.0 32 ............................. ATAATCAGCATCTTCAGAAGATTTTGAAGGGG 333 29 100.0 32 ............................. AACGTTGTGATGACTCGCCGTGGCCGCAATGG 272 29 100.0 32 ............................. GTATCACCTAGTGCAATTCCAGCTCAGGATTC 211 29 100.0 32 ............................. TCCGGAAGCAGGTCAAGAGGGTCAAGAATGAC 150 29 96.6 32 ............................T GGAAAATCTCTGAGATTCACGGAGGAAATTAA 89 29 100.0 32 ............................. AAGAGGATTGACACTGAAACCATTGCCCTGTG 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ==================================== ================== 25 29 95.6 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : CATACTCGCCCTGGTGAGAGCGTTCATTATGGTCGTCTGTTGGCGAAGCTGGAGAACGGTCAGGAGTGGGCTTTCCGTCTTGCGGCGAACCCGGTGAAGCGTCATACGAATCAGCAGACGGGTAAGCGTGAAGTGTTCCCGCACGTGACTGTTGCGCAGCAGCAGGCGTGGATCCGTGAGCGTGCTCCGCAGTGGGGGTTTGAAGTGATTCCTGCTGTTGAGGGTCAGGATATTGAGGAGTGCCCTATGGTTTCTTCTCGTCAGGACCTTGCGTTTGCACGTCGTAACGCTGAGGGCAAGGTTGGTAAGGTGAGTCACCGTAAGGCTCAGTTTGATGGTGCTCTTCGCATCACTGATGTTGAGCTGTTCCGTAAGTCTCTGCTCGCTGGCATGGGCAGGGGTAAGGCGTACGGTATGGGCCTTCTAACGTTGGTGCCTCTGTCCCGATGAGTGCCGTGGAGTAGAGGGGGAGCTAATCTGCGCGGGACAATGTTCTGCAT # Right flank : C # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //