Array 1 2536821-2538240 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025831.1 Akkermansia muciniphila strain EB-AMDK-16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2536821 36 100.0 30 .................................... TACAAAATCTCCGTAGGGTCTGCGTCATCC 2536887 36 100.0 30 .................................... TTGACCGCCGAGGTAAAGTACTGTATGTCA 2536953 36 100.0 30 .................................... ACAGGGACTGGCCGCATGTCGATTGCACCG 2537019 36 100.0 30 .................................... CATACCGGATTGTTTCTGCATAAAACACCA 2537085 36 100.0 30 .................................... CTGACGATATTTTTAGGGGTACGGGTGACG 2537151 36 100.0 30 .................................... AGCATAGCATCGAGGAAAACAATGCCGATA 2537217 36 100.0 30 .................................... AAAAATAAAATTCTCAAAAGGTGTGATCTT 2537283 36 100.0 30 .................................... GAAATAAAACAATGAGCATTTACGACGACC 2537349 36 100.0 30 .................................... CAATCGATTATACCCCCGCAACGCACCTCA 2537415 36 100.0 30 .................................... ATGACGCACAGGCCCCAGAATCATGGGATT 2537481 36 100.0 30 .................................... CAAGGGGGTTATACCCGGCTTACTAGTCTG 2537547 36 100.0 30 .................................... TTGTATACCTGTAGGGGTGCAATTGACATG 2537613 36 100.0 29 .................................... AAGCCATCGCGCTCGTCACTTCTTTCACA 2537678 36 100.0 30 .................................... CTTGGGACGTTAAACCGTCCCTTGCGGATT 2537744 36 100.0 30 .................................... CAACTGCCTTCTCTGCCATCGTGGGGAGCT 2537810 36 100.0 30 .................................... CCTAAGCGTCTGTCATGCACAATTGCGAGG 2537876 36 100.0 29 .................................... TTCTGCTTGGGCACTATCGCCTCCCCCTG 2537941 36 100.0 30 .................................... CAACTACCCCTAGGTGCTTGGTGTGCTGCC 2538007 36 100.0 30 .................................... GGTATTGAGCCAGCATTCACGTTCATCTTC 2538073 36 100.0 30 .................................... CACCTCAACCCATGATTGAAATTTAGATAG 2538139 36 100.0 30 .................................... CTACCGTTGAACCATACACCATTGAGCCGA 2538205 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : CTGACCTGGAAGAACATCAACCTGAAATCCGGCCTGGTTTCACTGGCGCCCAGCCATACCAAAACAGGCGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGCGCCATCCTCAGCCGGACGTCTTCCGCCGGTTCCCCCTCCCGTCCCGTTTGCCCGCCCAACTGGGAAAAGAAATGGATGGAAGTAAGGCGCCGGTCCGGCATCCTGAAAAAAAGCGGATGGGTGCAGGACGTGCTGAGGCATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTTCAGAAGGAGATGGGGCACTCCTCCCCCTCCCTGCTTTTGGCCCGTTATCTTAACATGGACGGAATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGTTCCGTTAAAGAAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCTCCATCAGACCGGAGGCGCATTT # Right flank : TAGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCATCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTCCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 2613878-2613313 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025831.1 Akkermansia muciniphila strain EB-AMDK-16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2613877 31 87.9 34 .........T-..C.-................. ATGTTGTCCACGATGTAGGTAAAGCCCTTGTACG 2613812 31 87.9 35 .........T-..C.-................. TTTGAAAATTGACGCGCCCTTGCTGTTTTTTTACA 2613746 33 100.0 33 ................................. ATGTAAAGGTCGACATGTCATGACACAGAAAAA 2613680 33 100.0 34 ................................. TTCCTACGGAGAATACGGAAGGGACAATGCCGAT 2613613 33 100.0 34 ................................. CGGTTGTCCGGGGTGCCGAAGGAGATACCACCTA 2613546 33 100.0 34 ................................. ACTTTGGATTTTCAAGGCATGAATCAGGTTCCCG 2613479 33 100.0 34 ................................. CGGATCATAGCCGCGCTGGTTAAGGTGGTAGGTA 2613412 33 100.0 32 ................................. CAGGACGCGCGGGGAATTTTCCCCACGTTGGC 2613347 33 100.0 0 ................................. | GC [2613324] ========== ====== ====== ====== ================================= =================================== ================== 9 33 97.3 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTAGCCTCCGTTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGTAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : GGAAGCCTCAGTACATCACACATCGCCGCCTGTAGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTTCAACTCCTTAAAGAACCCAATTTTCAAAAAATTCCAGGATTTTTGAGGCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCTGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //