Array 1 138435-139063 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBOD01000006.1 Campylobacter coli isolate H071960681, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 138435 36 83.3 30 AACCG.T............................. CCTATTGCAACCCTTGTTTCACGGCTATAA 138501 36 100.0 30 .................................... TCCAACTTCTAAGCTAACTAAGTTTCTTTT 138567 36 100.0 30 .................................... GGGACAGGCGGTAATTTTGAAGACTTACAA 138633 36 100.0 30 .................................... ACCTATGGCATTAAACAATTTTTCACATTA 138699 36 100.0 29 .................................... TCTTTAATATCATCAACAGAACCTTTAAA 138764 36 100.0 30 .................................... TCTTGCTGTATTTTTGCAAAAATCATCAAA 138830 36 100.0 30 .................................... TAAAAAAGCATCAGGGCTAGCTCCATTTTC 138896 36 100.0 30 .................................... TGCAGTTGATAAGCTGAAATTATCGTGTAT 138962 36 100.0 30 .................................... GGAAAAGAGTTAAAAGAGCAATTAGAGTTG 139028 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.3 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : TTATATCCTGCTCATCTTTCACTTGCTAAGTCTTAATCATAAGCTTAAAAATGATTATTTTGCTAGAGTTGCCATAAACTGCGTGGCATTATTTATTTTTATTTATGCGGGGGTTAATATTTCGATGACTATAGGTTTTGCACCGGTTGTCGGTATACCACTGCCTTTTTTTAGTTATGGTGGAAGTTCTTTTACAATTTTTATGATTTTCTTTGGAATTTTACAACATTTAATCACTTTTAGATATTTTTGGACAGATAATAAAAATAAATAAAATAACTTTAAGCAAAGATAAGATATAATTCTATCTTCACAAATCAAAGGCGGATTTATAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTTGGTCGCAGGTTCGAGTCCTGCTAAATCCACCACTACTTTAGTTGTAGATATCTAATCCCAAAAAATGAATTAAATTAACTTTAACTACAAATAATCTATACCGTTTACTATCACCTTAAATTGAAATAGA # Right flank : TAGACTTTGAACAAATAAAGAAAAATAGAGCTTTTTGTATACAAAAATGTATAAAAATATGCTATCATTTTAAAAGAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTCGGTTAGCCACGCAGGGTTACAATCCCTTTAAAACCGTTAAAATTCAAACAAACTAGCTTGTCTAATTTTATTAGACTTAGTTTGCTTGATTGGATATCAATATACTTTTAAAAGCTTCATCGTATGCCATGTTTTTTGCTCGTCTTTAAGGCAATATCTTCCCTTGGTTTAAAATCAGCCTTAATTTTTTCTCCAAGCGGGGTTATAATGTATTTTTCAAAAATTTTCAATCCCTGAATTCCTAATTTTTCAGCCTTTACACTTCCTTCTTTTGCATTTACAAACAATAGCTTTTGATTGTCTGTTAAGTTTTCAAATTTATTATCATGTTTTTCAACACAAATACTTGAGTTACCGATATCAAAACTATTATAATAAGCAAATTCGGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 18391-18094 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBOD01000016.1 Campylobacter coli isolate H071960681, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18390 36 100.0 30 .................................... CTATTTTTTCATTAAGTGCTTTATACCTTA 18324 36 100.0 30 .................................... AACTTTGCGATCATCATACAGACTTGCTTT 18258 36 97.2 29 ......C............................. ATTGCTCTCACTATCAATATTTATTTGAT 18193 36 97.2 29 ......C............................. ATAGCAAAATCACATATAGTAGTTATTAA 18128 35 80.6 0 ......................T..-.TA..TT.T. | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 95.0 30 ATTTTATCATACAAACATTTAACAAGAGGCTAAAAC # Left flank : TAGTGAGAGTAGATTTGTTTGTAGATAAAAAAAGCAAATTTCATGCAGTACCTATTTACAAAGCAGATTTTTCCACAAAACAACTTCCAAATAAAACTCCTGCTGCCATATCAAACGGAAAAATTAAAGAAGGGGTTGAAATGAATGAAAATTATAATTTTTATATATCATTATATAAAAATACCCCAATTAGCGTGAAAATCAAAGGCATGGAAGAGCCTATCATTTGCTATTATCACGGTTTTAATATTTCAGGAAGTCAAATAATCTACAAAAAGCACGACAATAATTATTACAATCTTAGTAAAGATGAAATGGCTATTTTTAGAAAAGGGGATAAAGAAGCTATAGCTATAGGAAGAATACTTGAAATTAAAAAATACAACATAAGTCCTTCAGGTGAATTAATTTTGATTGAAAATGAAGAGCGTAAATGGTTTTAGATATTTTGTGAAAAAATAATAAAAAACATTGATAAAATAGGCTTTTTAGAGAAGTCT # Right flank : CTCCTGCCATCATTTTTTTAAATAAAAATTTTCCTTAATATGCTTTCATCAGAGCCTTTTAAAAAATAATAAATTTTCTTTCTATAGCTTGACTCATCTTTTTTCCAATTGTTTAATGTTGCTAAAGGAATTTTTGTAATGTCAGCAATTCTTGAATCATGCAAGCCTATATTATCATAGCTAATGGCATCGGAGAATATTTTTTTTAATTCTTCTTCATTTGTATTTTTTAAAAAAAGATATAGCTTAATTCTCCAATTATTCTCTTTTTGCTTCCATTCTCTGATGGTAAAATAAGGAATATTAGTAATTTGTGAAATTTTTACATCATTGTTCATCAGGCTTAAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGATGATCAAAATGATTTAAAGCCTGCATATTACTAACTCTAAGAAGCCTTATTTTCCCATCTTTTTTGTAAAACACTTTAAAAACTTCATCACTTTGTTTGTGTTTTACCATAT # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATCATACAAACATTTAACAAGAGGCTAAAAC # Alternate repeat : ATTTTACCATACAAACATTTAACAAGAGGCTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //