Array 1 106675-107240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHX010000005.1 Akkermansia muciniphila strain CSUN-12 AmI assembly_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 106675 31 87.9 34 ........-.T.-.C.................. ATGTTGTCCACGATGTAGGTAAAGCCCTTGTACG 106740 31 87.9 35 ........-.T.-.C.................. TTTGAAAATTGACGCGCCCTTGCTGTTTTTTTACA 106806 33 100.0 34 ................................. CAGGCCCGTACCAGAATGAGGACACGGATTTATT 106873 33 100.0 34 ................................. TTCCTACGGAGAATACGGAAGGGACAATGCCGAT 106940 33 100.0 34 ................................. CGGTTGTCCGGGGTGCCGAAGGAGATACCACCTA 107007 33 100.0 34 ................................. ACTTTGGATTTTCAAGGCATGAATCAGGTTCCCG 107074 33 100.0 34 ................................. CGGATCATAGCCGCGCTGGTTAAGGTGGTAGGTA 107141 33 100.0 32 ................................. CAGGACGCGCGGGGAATTTTCCCCACGTTGGC 107206 33 100.0 0 ................................. | GC [107225] ========== ====== ====== ====== ================================= =================================== ================== 9 33 97.3 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTGGCCTCCGTTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAGATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATTCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : CGGAAGCCTCAGTACATCACACATCGCCGCCTGTAGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTTCAACTACTTAAAGAACCCAATTTCCAAAAAATTCCAGGATTTTTGAGGCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCTGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 180464-180828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHX010000005.1 Akkermansia muciniphila strain CSUN-12 AmI assembly_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 180464 36 100.0 29 .................................... TGCGTGGTTGCCCCGATACTTCCCCCATA 180529 36 100.0 30 .................................... GAGCGAGTGCGACGCTAACCGCAAGCTTAG 180595 36 100.0 30 .................................... TACAGAACCTTTGATTCCTTCTGGGTGCAA 180661 36 100.0 30 .................................... GACGCCGTTGAAGCTCTCACTTGCGGAGAC 180727 36 100.0 30 .................................... CTGCGATTTCGCAATGGCTTCATTTTGTTG 180793 36 94.4 0 .............................A.....T | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.1 30 ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC # Left flank : TCTGTTATGCACCAGAACAAACAGATGCCGTTGAAAGCGGCGGTAGAGGCCGTTTGCCGCAGTTTCCGCAAAGCAGTTCTTGCCGGGCAATCCGGACCGTATGAACCATGGCATATGACAACTATAAAATGGGCTGGCTAGTTGTGTTCTTTGATCTTCCCACAACCACGCCGGAAGATAAAAAAAACTATCAGTATTTCCGTAAGGCTCTTTTAGAAGACGGCTATACGATGATTCAGTATAGCGTCTATGCCCGCGCGTGTGTTACTCAGGAAAGAATAGCTACCCACTCCCGCAGAATCCAGAAAATGATACCGCCTGATGGTTCTGTCCGCTGTCTTTTCGTTACGAATATCCAGTGGGATAAGATGTTCGTTTTTCATGGCAGGTCTTGTCCCCGACAGGAGGTTTCCCTTCCTCAGCAGATGCTCCTCTGGTAAAAATATCGGACGCCGTATTTTTTTATAAGTCGCTGAACATAAAAATAAGGCACAGTATCT # Right flank : TAAATACGCCTCCGGTTTGATGACGCAAGGTGGATGTCCGTCTTTGGCCGCGCAATTCCAGACGGATTTTTGTCAGTCTTTCTTTAACGGAGCGGGAGGAATGAAGCTGTACGTCCAGAACATGGCGCCGGTTGCGGAGGTGATTCCGTCCATGTTAAGATAACGGGCCAAAAGCAGGGAGGGGGAGGAGTGCCCCATCTCCTTCTGAAGAAGGTTTTGATTGCAGAAATGGGCCAGGTGATAGGAGGCGTAGGTATGCCTCAGCACGTCCTGCACCCATCCGCTTTTTTTCAGGATGCCGGACCGGCGCCTTACTTCCCTCCATTTCTTTTCCCAGTTGGGCGGGCAAACGGGACGGGAGGGGGAACCGGCGGAAGACGTCCGGCTGAGGATGGCGCCCAGCACGGGAAGGATGGAAACGTGGCGGCTCCCGCCTGTTTTGGTATGGCTGGGCGCCAGTGAAACCAGGCCGGATTTCAGGTTGATGTGCTTCCAGGTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //