Array 1 47935-47368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSGA010000025.1 Zooshikella ganghwensis strain BCCM/LGM 28823 25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47934 28 100.0 32 ............................ TTCGCTTTAGAGCGGGACCAGCAATCAAGCAA 47874 28 100.0 32 ............................ TTAACGCCGAGAGCGTGCCTGGCGAGCGTTTT 47814 28 100.0 32 ............................ CGAGGAAAAACAAAAATAGACGAGGATGTCAC 47754 28 100.0 32 ............................ AATAGCGCGGGCTAGAGTGCTTTTCCCGACCC 47694 28 100.0 32 ............................ TCAACAAGCATTCTACGGCAAGTACTGTCTGT 47634 28 100.0 32 ............................ TGAAGGTGGTTTTTTTGCACCGACTAGGGCGC 47574 28 96.4 32 ..........................G. TAAAAAGCTGACAAAAACTCCCATGTCCATAG 47514 28 96.4 32 ..........................G. ATATTACACAGCAAGCAGTGGTGCTGTAGCAC 47454 28 92.9 32 ............G.............G. TTACGTAACTTGTTGTATAGGGACATCTCTGT 47394 27 75.0 0 ............A...AG..-..G.CT. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.1 32 GTGAACCGCCATCTAGGCGGCTTAGAAA # Left flank : CGGGTATTTGCCAAACAGCTTGAGTCATTAGTGGCGTTAAACCTTGCCAATGATCCCGTAGGACCTTTATGTGACTTTAAAATGCCTGTTCCTGTCGCACAGGATTATGCTGGCCCTTGGTGTGTTTACCGTCGCTACCGTGTTCCCCCCAGAGGGAGAAAAAACCGTATCCAGCGATTAGCTTATGCATTTGAACACAACCTGCCCCGTTTTGTGTTACACAGTCAGTCCAATCAGCAAGTTTATTGCGTATCGGTTGAGAAAATGCCTGTAGAAGAGGGGCAGCTTGGTGAAATCAATACGTGTAACTTTGGGCTATCAACAACAGAGCAGGTGACTGTATTACCTGACCTTTGAGTCGAGCACATTGACCCTTTTTTGGAAGCCACTTTTACACGCTTATAAATCAATATGTTAGCGTAGGAGCGAGAAAAAGGGTCAACGATCATATATTACGCTACAGCTCTTTAACAATCAGACTTTACATAGTTTGATCTATA # Right flank : GATTACGAACTTGAAGACATTCATAAAGTTATTCTCACTCTGGTCTTCCAAATATCTGTACAACTATACTAGAAATATCTTTAGCTACTTCTTTCTCATACCCTTCATCTTGCAATAATTCTGGCAGAATATACTCCGCTAAGTATTTAACAACATCTATGGATAGTGATCTCTTTCCCGTTTGCCAGTCTGAAAACCTGCTGGTTGTAAACTTTTTACCCAATGTATCATTCAGATGCTCTACTGCATCACTAACCTTTTTACCATCAAGTTCATAGAGTTGCCGCCAATAACGAACTATATCAACATCACTTCTTTCAATGTTAGATTTTTGATATCCTTTCTCTTTCGCAATATTTTTAACAGTATACATATGTAATTTATCGGGTTGTGGGTCAAACTCAATATAATCGCCAATATCAATCTCATACTGTCTTCTTAGTTTAACCGGAATAGTGATAAAACAACTGTCCCCATATTGCCGCACTTTCCCCTTAATT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCGCCATCTAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 55613-55406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSGA010000025.1 Zooshikella ganghwensis strain BCCM/LGM 28823 25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 55612 27 100.0 33 ........................... GAATGCCGCAATTCAGCCTCTGTAATGGATGAA 55552 27 100.0 33 ........................... GAAACAAATCGAAATAATGACTACTTAACCCCC 55492 27 100.0 33 ........................... AAACTTGCTGATTTTAGTGATTATTTAGCTGAC 55432 27 92.6 0 G............G............. | ========== ====== ====== ====== =========================== ================================= ================== 4 27 98.2 33 AGTGAACCGCCATCTAGGCGGCTTAGA # Left flank : TCACCATTGCGGGTACTGATTACATGCCTCCCCAAGCCAGTGAACTACCTTGCCTGTTTGATAAAATGGTAGCGGGTGCCAAAGGGATAGACGACATCTATGACCAAGCGATTTTTGTATTCCTAACCATGGCGCGTCATCGGTTTTTCTATGGTGTGAATAAACGGATGGGACGGCTCATGATGAACGGTATATTACTCAATGCTGGTTACCCCGCAATTAACCTTCCAGTTAAACGAAAGCTGGAGTTTAACCAGTTAATGTTGGACTTTTATCAGTCTGGTGATCAAGGTCCTATGAATCAGTTTATGCGTTCTTGCCTGGATGATCGTTTGATTACTATTATGTGCGAGTAAAGCACAACGCATTAACCTTCTTTTTCGAGACAACTTTTACATACTTATAAATCAATGAGTTAGCGAATGGCCTAGAAAAGAAGTTAACGACCATCCATTACGCTACAGCTCTTTAACAATCAAGCTTTACAACGTTTTTCCTAT # Right flank : ATGTAACTTCATTTATTCCCAGAAATAGCCAGAGCCAGGATGCTAACTATAATGATGTTTGGACTTTTTGTTTAAGGTGGCAACATGAGCAATAAAAATAAACCTGCCCCATTTGAATTACAGAAAGAATATAAGCTGGACGATGCCCCAAAAGCAGTAACCACAACTCAGCGTTTTGATAGTGTTTGGGATGCATTGGATTTTCCCCCCATTGAAGCCAAAAAGCTCAAAATTAAATCCAAGCTGATGATCGCCATTAATCAGGAAATTAAAGATAAAAAATTAACCTCAAGTGATTTAAAAAAGCAGTTTAATATCAGTGATCAACTGGTAGCTTATTTAGTTAATGAAAAGTTCGATGCGCCCAGTATTGACCAATTATTGGAAGTCGCATGGTCACTTAAGCTTCCAGTAAAACTCAATATCACGCATGAATGAGCAAGCAAACACACTACAAAATACCGCTAGTACGGTCTTTCACTGGAAGTACGTGTCACGCT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGAACCGCCATCTAGGCGGCTTAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //