Array 1 225573-224681 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ130617.1 Listeria fleischmannii 1991 Scaffold_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 225572 36 100.0 30 .................................... TTTCCCCCGTTCGGAATTCTAAGTAGCTAT 225506 36 100.0 30 .................................... TAAAGATACTACTTTAGGATTCACGCCTGT 225440 36 100.0 30 .................................... GAGAACAGTAAAGAAGGGGTATGTTTTGAA 225374 36 100.0 30 .................................... AATTTCCAGATATTTACAAGCAAGTGTTAA 225308 36 100.0 30 .................................... AAAGATGTGGTTATACCATTATCGTTGTCA 225242 36 100.0 30 .................................... TCCTCTGTTGTAGATGCCGCGCCTCGTTGT 225176 36 100.0 29 .................................... TCGTAAAAAAGGGATTGACTACATAGCAC 225111 36 100.0 30 .................................... TCTGGAGTTAAAGATTTACTCGACTATGGT 225045 36 100.0 30 .................................... AGGAAAGAGCAACTTTTAGAAGGCTGGACG 224979 36 100.0 30 .................................... AGACAACATTCACGATACATCAAGCAATAG 224913 36 100.0 30 .................................... TTGTTCGCCCTTATTACGACTCGAATACTC 224847 36 100.0 30 .................................... TGTTCAAGATGAAATTGTATACATGATGAT 224781 36 94.4 29 ..................................CA AACTTGATCAAAAAAATCAAGCTCGGAAG 224716 36 75.0 0 ...............A.......TT.C.CA..C.TT | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 97.8 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : TCCACGACATCATCCAGATAAGATACACCCCGACGCTTAGCCAAATGTGTCAGAGCCACATAAATCTCTGATATTTCAAGCTTTTCATTTAGCCCTTTTACTCTCAACTGATAAGGATTTTCGTTCACAATATCACAAACATCCATATCATGCGCCAGAAGTAATTGTTTAATTCTTTCTCTACGATGCTTTTTGCGTCGGCTTAGACGTCTAGATTGGCGACGACTTGTTCTCCTGCTTTCATTTTCTGAAGCATCTCGACTACTGAATAACCTTACCCCAGCATCTAGGACATCACCGTTTTCAGCGTCTATAATCCCCCATCCTACAGAAGCAACCCCAATATCCAAACCTAAAACCAATTTTTTCATATGATGTTCCCCTTCCTTTTGTGTACTAATTAAATTATACAGTTTAAAGAGCGATAAAGCTACTATAAAATAGTTTTATGTTATAATAAAACTAAGTAGTTTCTAAAAACTCATTTTGACGAATTTGAG # Right flank : TCCTAGAAAATCATAAAACCATTTGCGTCTCCAAAATCTAATTTTGAAGACGCAAATGGTTTTTAGTTTGGCTTGGGTAGCCACTTTATTAAAATGGCATTTTGAAATTGCCGAAAGGGTTTTTGCCTTTTTTGCCTTTTCCGCCCATGCCGCCGGACATTTGTTTCATCATTTTTTTCATTTCATTAAATTGTTTGAGGAGGCGGTTTACCTCTTGGATTGGGCGTCCGCTGCCTCTTGCAATTCGTTTTCTGCGGCTGGCGTTGATGATATCAGGATTGTCTTTTTCATTTTTAGTCATGGATTTAATGATGGCTTCGATATGCCCAAGTTGTTTATCATCGACTTGCATATTATCAAGGCCCTTCATTTTGCCGGCGCCAGGTAGCATCTTCAGTAGCTCATCAAGCGGGCCCATTTGCTTCACTTGACCAAGTTGTTCTAGGAAGTCATCGAGTGTCATGGAGTTTTCTTTCATTTTGCGCTCCATTTCACGCATT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 231504-231935 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ130617.1 Listeria fleischmannii 1991 Scaffold_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 231504 37 100.0 29 ..................................... ACTTTAGCCAAAGCAGATGGTGCGTTTAT 231570 37 100.0 29 ..................................... AGGGGATACAGGCGCTTTATTCGCTGTTA 231636 37 100.0 29 ..................................... TACTACAGGTGAATTTGAGTCGCTCAGCT 231702 37 100.0 29 ..................................... GTAGTTCTCGTCTTTATCATACAGTTGTA 231768 37 97.3 29 ....................................A GCACAAAAGAAGTGTTAAAGAGCAAGTGC 231834 37 100.0 28 ..................................... AGCATTGGCGAGCGTTCTCTACATTAGT 231899 37 86.5 0 ...........................T..C...TTA | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 97.7 29 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAACT # Left flank : AAATATTGATGATACACTAAGTTATCAGGAATATGAGGAAGTTATGAATTCCATGAAGCGACTTACCACTAAGCATCCTAACTTCTATTGTATGGTTTTCCCAAGCCAAATCGGATATGTTTATATTAGCGAGGAACATATTGAAAGTATATTAGTTGTAGGAGAAGAGGCTCATTCACTCGCGGATGGTCGTAATTTATATACACGTGTTTGTGCCTATTACCCAGATCAAACTATCCCTAGCTACAACGAATTTTTAGAGGCACTAAAAATTATTGCCCCTTATTTATTTACAAGCAAAAAACAAAGCATCCAAATGAATGTAAAAGAACTGGTTTTAATCAAAATAATTAATGAGCTATTCCAGTACTTTGACTTTATTCCAGTAGCAGTATTACAACATAGCCAACTAGAGTATGATTTTTTATATGAAAGCTGATAGATTTTATGATAAACTAAAATAACAGTAGTTTTTTTTAAAAATCTAAAACCAATTTGAG # Right flank : ATTAGATGTGATTGATCCTAATTTGAATAGTTTCATTATTCTCAGATATTCTTATGATTTCATGTAAATAAAAATGCTAGAAGCAGATTATTGCTGCTTCTTTATTGTATCCAAATAACTATTCCTAAATAGAACTAAAGTCTATCTACTATGTTCAAAAGCCTGATTTTATACAACTTTTTCTCTAATTAACCCCAAAAGTACTATTTTTGTCAGAAAGCTACTTTTTACTTTCTTTTTTTAGATTTACTCATTATATTTAAGTTAATCATCAAGAGCTTCTCTAATTAAAATAAAGGAGGGATGTAGAATTCTGAAAAATTAATATCGTGTTTTACAAAGGGAAGATGGTCGGTTTTTTGTAAATGTTGGGGGGACATAAACAAATCGCAAAGACAGGAAAGAAAAACATGAGAAACGCCCTTTCATTGATTTTCATTATTTCGCTTAAGGGATAGGCGATAGGGGGAAAAATGATGGGAAGAAAAAGTAAGGTGAAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //