Array 1 4499074-4500293 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP009010.1 Xanthomonas citri pv. citri strain JX5 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	===============================	=====================================	==================
   4499074	    31	 100.0	    37	...............................	AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGAG	
   4499142	    31	 100.0	    35	...............................	CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGAG  	
   4499208	    31	 100.0	    34	...............................	CTCGGGTTTCGGGATGTGCTTCAGATCTGCGTCG   	
   4499273	    31	 100.0	    35	...............................	CGCTGCACGGATGCGCCAGGCGGCGAGGCGATCAT  	
   4499339	    31	 100.0	    36	...............................	TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG 	
   4499406	    31	 100.0	    36	...............................	GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC 	
   4499473	    31	 100.0	    34	...............................	CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC   	
   4499538	    31	 100.0	    36	...............................	GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT 	
   4499605	    31	 100.0	    37	...............................	GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC	
   4499673	    31	 100.0	    35	...............................	GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA  	
   4499739	    31	 100.0	    35	...............................	GCGGATATGTGATTAGACCCTTTTACGACTTTCAG  	
   4499805	    31	 100.0	    34	...............................	TCATTGAACCCAAGGACCACTTCGCAGGGCGACT   	
   4499870	    31	 100.0	    34	...............................	TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA   	
   4499935	    31	 100.0	    34	...............................	GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG   	
   4500000	    31	 100.0	    35	...............................	TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC  	
   4500066	    31	 100.0	    34	...............................	CTGACTATCCCTGCATAGGCCACGACCTGCGAGG   	
   4500131	    31	 100.0	    34	...............................	CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT   	
   4500196	    31	  93.5	    36	T...........T..................	CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA 	
   4500263	    31	  96.8	     0	.G.............................	|                                    	
==========	======	======	======	===============================	=====================================	==================
        19	    31	  99.5	    35	GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	                                     	       

# Left flank :   ACGCGGCTCAAGTCCCATGATGATTCTTGTAAGCTACGACGTCAGCACCAGCTCTCCCGGGGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGGGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTACGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAAAAAAAAAAAAAAAAATACATAGCGGATTCACGGGGTCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGGG
# Right flank :  CAATTTAAACTCGCCCCGCCAGCCGGACGCTGACGAGGTGCAGGTTGGACATGCTTGAGGCCTGCGTATGGCAAAGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGAACCATTATTTGACGATGATGGTCTGAGGCGTGCCTGCAGGCTTGCCGTCCACCATGACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCAGCCACCTGGCCATCCTGGTAGGTCAGCTTTGCCGACACGGCCACGTTGCTCGCGCTGCCGTCCGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTCGCCGGGGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACACTGGACACCGTCACTGCGCTACCCGTGGCAGCACCGCCATCGGTGCTGGCCGCACCGGT

# Questionable array : NO	 Score: 9.23
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCGCCCTCACGGGCGCGTGGATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.20,-7.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.41,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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