Array 1 52347-56926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBGH010000010.1 Thiomicrorhabdus sp. HH3 2873448764_Ga0438910_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 52347 32 100.0 35 ................................ GATGCGGTGGGCGACTGGGATGCGGATGCCGCCTA 52414 32 100.0 35 ................................ CCTGAATAGTTATTACCGTGTTTGTTGTTCCGCCA 52481 32 100.0 33 ................................ ATGCCGATGGCCAGGCGTTCATCGTCGAGCGCA 52546 32 100.0 33 ................................ ACCTTGCATTCGTGCCCGCGCCACCGTGGTAAG 52611 32 100.0 35 ................................ AAGCAACGAAACGCCGGCTGGCACCGGCGCAAGCG 52678 32 100.0 33 ................................ AGGGATGCAAATCTTTGGGTTCGAGGTGATAGT 52743 32 100.0 34 ................................ AATCTGTCACGCTTGAACGGGGAATGGCTTTTGA 52809 32 100.0 34 ................................ ATGCATCCACCCTCTCAAATTTCCCGCACGCCTT 52875 32 100.0 34 ................................ ATATTGGCCGCGTCATAAGCCGATCTATACGCGG 52941 32 100.0 33 ................................ AAGGCACAGCTAAAAGACCAGCTTGACGAAGGA 53006 32 100.0 34 ................................ AGTGTTTCAACGGCGGCGGCATGCTTGGCCTTGC 53072 32 100.0 34 ................................ AACATGGCTCTGCACCTCTTTGACCACGGTTTTA 53138 32 100.0 33 ................................ TTCTTTAACTTTTACAGCTCACACGCTAGCTCC 53203 32 100.0 34 ................................ GGTTTATCCTGCATCAATTGGTCAAGCAGATTGA 53269 32 100.0 34 ................................ TATTTAAAGCAATTTGACCTTTTACAGTGTTGCT 53335 32 100.0 36 ................................ TTGACCACCGCTCAATCTAGATTGGTCTATATCCAG 53403 32 100.0 33 ................................ GTCAAATTCCGCACGAATATCCTCATAGCTTAA 53468 32 100.0 36 ................................ CATCCATTTCTTCTGGCGTAATCTAACCACTCGCTC 53536 32 100.0 34 ................................ ACTCAATACTTAAAGGGGGTCGAACTGCAGCTCG 53602 32 100.0 33 ................................ GTACAAGAAATCGCCAACAAGGGCTATTACGAA 53667 32 100.0 34 ................................ TTTAGGAATCACCGCTACAACTATGCCATCGTTT 53733 32 100.0 34 ................................ GTAGAACCAACGGCTAGTTTAGCAGGTATAATGA 53799 32 100.0 35 ................................ GATATCCCTACAGGCGTTTATTTAAAGGGTAAACA 53866 32 100.0 34 ................................ CAGTCAACACTATCTATTAACCCATCTCTTAGGT 53932 32 100.0 34 ................................ TAGAAAATCCAATGTTGTTTTATCCACGCTCATT 53998 32 100.0 33 ................................ TTACCCACTACTGATCCTACCGGAAAGTTCCAT 54063 32 100.0 33 ................................ CAGTCGTTTAGCTGATTCCAACATCTCTGCATC 54128 32 100.0 34 ................................ TTTAAATCAAACGGCATGGGGTTTCCCCTGTTTT 54194 32 100.0 34 ................................ TCAATCGGCTGTGCCTGGCTTGGGTATTTACCCA 54260 32 100.0 33 ................................ GCGTCCATAAAATCGACCATGCGCGTCACATCC 54325 32 100.0 34 ................................ CACGGTTTTTCCGGGACTGTGCCGGTGCAAAGGG 54391 32 100.0 35 ................................ CAGCAGGACAGCGTGCAGAAGTCCATCGAGACCAT 54458 32 100.0 34 ................................ AACCGAGAAGCCGATTGTGCTGTACGGGTTGACG 54524 32 100.0 35 ................................ TGCTCCAGGAATAATGACGCGTGTGCGCGTTTTAG 54591 32 100.0 33 ................................ AGGCGCAATGTGTTTAATCGCGTCGGCGTACTC 54656 32 100.0 33 ................................ TTTGACAGCTTGTATCCATGGCTTTTTGTCTTC 54721 32 100.0 33 ................................ TTCAATTGGCAATCTAGTAATAGTATCCCTATC 54786 32 100.0 33 ................................ AATACCTAGCGGTGCAGACTGCTGCTGTTGAAT 54851 32 100.0 34 ................................ TCGTTTAACCCCTGGTCAGTTCATTGAACGTAGT 54917 32 100.0 36 ................................ CTTGAGCCAGCCATGCAATGCATCGCTCAACAGGTA 54985 32 100.0 33 ................................ TAACAACCCCAAGGTTGGGCATGATATTGGCAT 55050 32 100.0 36 ................................ TTTGAGTGGGTTGGTTTAATCGGCTTTGGGGGTACT 55118 32 100.0 34 ................................ TTCGCTCTTTTTAAGCCGGCGCTCACGGCAATCC 55184 32 100.0 33 ................................ TGGACGGAGTTGATAATGGCGCGGAAAAGGCAC 55249 32 100.0 33 ................................ GACCAAGGCCCCGACAATCAAGCACCATCCCGC 55314 32 100.0 33 ................................ TATTGGTTGCGCGCCATAAAGAGAAAGTACCGC 55379 32 100.0 34 ................................ TAACTTTTTATCTTTCCTAAATTTGGAGAAGATA 55445 32 100.0 33 ................................ TGCTGCATCTGGTAGCTCACTACAAATCGCTGA 55510 32 100.0 35 ................................ AGCGACCTTCAAGCCGTTTTCAGCCAAGGGCGGGT 55577 32 100.0 35 ................................ AAGTTCCATCGTACCCGGATTAAAGAAGTAAAATT 55644 32 100.0 34 ................................ CCAGAAAGCGCCATGGCACCCACAGGGTCTATCA 55710 32 100.0 34 ................................ ATTTTCACCACCGTAATTGTTAATAAAATGCAAA 55776 32 100.0 34 ................................ CGTGAAAATCACGACAGACGGCGGGGCTGTTAAA 55842 32 100.0 36 ................................ TCTAAAAGAACAGGTTACAGCGCTTGAAGAACAGGT 55910 32 100.0 33 ................................ AAGATCAGAAACCGACACCGCTCCAGTCGTTAA 55975 32 100.0 33 ................................ CTCATATGCTTTTCTAATATTGAAATTGCTCTC 56040 32 100.0 35 ................................ ACAAGAGCCATTAATGCCAGATCGCTTTATGACAG 56107 32 100.0 33 ................................ TTCAATATACGTAGCCATAAAATCACCAATCAA 56172 32 100.0 34 ................................ GGCTCCTTGCCGCTCGAGCGCAAGAACTCCACCG 56238 32 100.0 33 ................................ TCCAATGGTTGCCGGCAAGGTGCAAAAGCAGCT 56303 32 100.0 34 ................................ CATTCCCTGGCGGATTCTTAAAGCTGGTAGGTTC 56369 32 100.0 33 ................................ CCGCTATCCACGGCGTATGACATGAGCACAATG 56434 32 100.0 33 ................................ GTTAAACAAGGTGCCGCAGTCTATATCCCTACA 56499 32 100.0 33 ................................ AAATCAACGCTGAATCACCGTTGCAAAACCTTG 56564 32 100.0 33 ................................ CGGACAGCGCGCCGCCCATAAACACAATGTCGG 56629 32 100.0 34 ................................ TCGTACCTGGTTGACATGGAAGTGATCCGATCAA 56695 32 96.9 33 A............................... GGTATAAAAAAACCCGCCGATGCAAAACATGGG 56760 32 96.9 35 C............................... GCCTTCAAGATAAATACATTGATGAGCTTAATGCA 56827 32 100.0 36 ................................ GAGTTGAACAGCGACTATTACGGGTAAAACATGACC 56895 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 70 32 99.9 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : CTTAAACGAAAAAAGGAAATAGAAAATGCAGATGATGACATTAGATGAGTTAAAAAAAGAAGCGTTTAAAAATCCGAATGTTAAAAAAGAGTACGATGCGCTTGAGGAAGAGTTTAAATTGATCGAAGCCTTGGTCGATATGCGTCAAAAAGCTGGTTTAACGCAAGAAGAAATTGCGCAAAAAATGGGCACTCAAAAAAGCAATATCAGTCGCTTAGAATCTGGAACTGGCAATCCGGGTTGGAAAACCCTTCAGAATTATGCCCATGCGTGTGGATTTAAAATTCAGCTGCAATACACCCAATAAGTCTTTTCCGTCTATCGCTAACCTAGAGTGCTCTTTAAAAACTCGGAACTTTAGCGATAAGGCGCAAATTGCCTGTCCTTCAAACCTTAAGTCTCTTCTTCAAGCAAGGTTTGCTAAAATGTATAAGCTTATTTTCAAGGTTAGCGAATTCCCGCCTAAATCCATTCGATTTGCTGGGCTTGAAAGATAAGCG # Right flank : CGGCATTTGGGTGAGTACTAGAGTCTCCTGGTGGCGTCATCGCGAAGGATGTCGTTGCCGCTGTTAGCGTTTTGCAAAAACCGTCCAACTCGGCAAGACTTTGTTGGTAACGCTGCGAAGGTTTCGACGACCTGGCCTTATATGTTGAGTTTTTTGATCGTCGTTTTCGGTATCGTAATGCGCACGTTTATAGACGTTTTGGTCGCGGTCGATAATCGGCACGATTAGCATGGATTCCGGTTTTTTGGTCGAACGCCTTGGTGTCGCTGAAATCGAGGCGCGGTATTTCGTAAACATTGTGGATGTTGATGGGGTGTTTGTTGAGCGCGCAGAGCACGGCTGTCATGCGGATATTGGGCACACCGTCCTCGAGATAGAGTGGCAGACTGATCCCATTCGATCAGATTGCCGCTGCCAACCATCTTGATGCCTAGCGAATGATTGATAATCACCCTGAACTCAAGTTCTTGTGCTGGTAAAGGGTGCTGGCATCGGCCTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //