Array 1 361770-362062 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARNA010000001.1 Listeria booriae strain FSL L7-1843 NODE_1_length_1439590_cov_43.891277, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 361770 30 100.0 36 .............................. AACGATCGATGAGGTTCTCCTGTGTCTGATCGCCGT 361836 30 100.0 35 .............................. ATGGGCATTAACTTTATTCCAGTTGTGCTATTCCC 361901 30 100.0 37 .............................. CTTGTTGCGCTAGGGGGTGCTTCGTTTGATTTGTGGC 361968 30 100.0 35 .............................. GTGTATTCAATTGCCAAATTTTGTTCCTCCTAATT 362033 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 99.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGGAAAGAGGGGTGGTGATAAGTGGTGTTTGGAAAAGCGAGGACAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGCAAGGGATTGAGCCTGTTTTTGGAGTTCGGGTTGTAAGGCTTGGGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : TCAGACAGATGCGGCATGGGCGGAGTTTGACAGATTGTCTTTATCTAAATAATATGAATCCAGACTAGATTGCTCACAAAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGTAATTTGATGGTGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGCCTCTGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTATTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 925793-926529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARNA010000002.1 Listeria booriae strain FSL L7-1843 NODE_2_length_1243404_cov_56.896573, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 925793 30 100.0 36 .............................. TTTTTTGATGCCGTTCGAAAATATTGGCTGCAGCTT 925859 30 100.0 35 .............................. TTTGTAGCGCTGGGCTTAAAATCGTTGTGTCAAGT 925924 30 100.0 36 .............................. AATAAAGGATTTGATTGGGAAGACCCAAAAGTGTGG 925990 30 100.0 34 .............................. CAACTCGTTGCAAATCACCTTCATCATATAATGC 926054 30 100.0 35 .............................. GCCCCTTTCGCCCCGACACACACCCATCATTCTTC 926119 30 100.0 37 .............................. AATGACCTTAACGAACCCGTTTTTTGTTTGGTCGTAG 926186 30 83.3 27 ...................A.....CT.GC AACTTAGTTTGAGCAAGCAACGCATCA T [926208] Deletion [926243] 926244 30 100.0 37 .............................. GCCCTTCTAATGTTCTGATAAATTCTAAAGTTTCTTC 926311 30 96.7 34 .............C................ ATTACGCATCCAACCACGATCGGAGCAATAATTG 926375 30 100.0 37 .............................. TTGTCTTCGCCTAATGAACCGAAGAGCGCACTTGTTG 926442 30 83.3 27 CG...........C...A......C..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [926499] 926499 30 73.3 0 .C....TC.......C.A.....CA...C. | G [926509] ========== ====== ====== ====== ============================== ===================================== ================== 12 30 94.7 34 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAAGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTAGGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGGTTCAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGAGAATTCAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCGGTCTGTTTAGCTACGATTGCTTTGGTAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCCAATAGACTCTACTTTCTAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTACCTAAAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAATGCTTCTTTTCCAGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAAT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 45411-44533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARNA010000005.1 Listeria booriae strain FSL L7-1843 NODE_5_length_117482_cov_41.782198, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 45410 30 100.0 35 .............................. GCCGATGCAACAGAAGCAGAAAAAAATGATATACG 45345 30 100.0 34 .............................. GTGGCTGTTGGTGAAAAGAATTTTCCGCCGAATA 45281 30 100.0 35 .............................. CAGAAGCCCCATCGTGAAAAATAGTACACTGCTCC 45216 30 100.0 35 .............................. CTATACTCATTACGATAAATGCGCTCCTTCATTCT 45151 30 100.0 36 .............................. ACTGCGGAAGAAACTCGTCTTGCTAGAAATAAAGCT 45085 30 100.0 36 .............................. AGTGCAGAAGACGACTTTGATGACGATTTGGACGAT 45019 30 100.0 36 .............................. TTTGGTGCCTTTAAAGTCTTCCTATCAAAAATAATC 44953 30 96.7 35 .............C................ GAAGATTGGATTCTACAAACGCCTTCTGGATCTAC 44888 30 96.7 35 .............C................ ACTATTGAGGCACAGCAATTAGTTGAGCAAGTCGC 44823 30 96.7 36 .............C................ TTACTAATGAGTGTGTTCAACACTGTTGATTTCCCA 44757 30 96.7 36 ........................A..... TTCGAACAATGTAAAAAGAATCCTGATTCTGCGCCT 44691 30 93.3 36 .................A..G......... CCGGAAAAAGAAGCTATTGGAAATGCAAGCATTTTT 44625 30 96.7 34 .........A.................... TTATCTGCACAGCACGCAAGATTGGTAACTTACG 44561 29 73.3 0 ............T...-.A.G...CC..CA | ========== ====== ====== ====== ============================== ==================================== ================== 14 30 96.4 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAACTTTGAAGTACTAGATAAAGAACGCCTCGTTCAGAAAACAACATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATGATTGTACAAAACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGCATTGGTACTAAAGGGGTTAAGTCTGTTTTCGGAGTTTGGGCTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : AATAAGGCATTAGTAAAACGAATTGAATAACAAGAGGGTTGATATCCATTAATACTAAACAATGGATATTAACCCTCTTATCTATTGGCCTCTATGTTGAAAATTTTTAGCATGCATTTAACAACAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGCGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCGACTATTTGATTTGCAAGGGTAACAGTTTTTGTGTCTAGTACTCTACCATTGGCATCATATGCAGTTAGTGTGATATTGTCCGTATTTTTTAAAATCACTCGTTTCGCATAATAC # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 48952-48658 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARNA010000005.1 Listeria booriae strain FSL L7-1843 NODE_5_length_117482_cov_41.782198, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 48951 30 100.0 36 .............................. AGGTATTTTTAACCGCGAAATTTAATTCATGTTGTG 48885 30 100.0 37 .............................. ACCATCCTCGGCTGCTTAAAGAAAATTTTAGTCTTTT 48818 30 100.0 35 .............................. GCGGCAGATGAAGTATTCCAAGATTAGCCAATTTT 48753 30 100.0 36 .............................. TAGTGTGCCAGTGCGCCACCTAAACTGTGTCCTGTA 48687 30 93.3 0 ........................A...T. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.7 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTTGCCGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAAAAGGGGTTAGGATGGTTTTCGAGAAGTAGAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTAGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CTCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACGTATTTGAGGGAATACTCGTCGCGGTCATACGCCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACAGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //