Array 1 1170-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_UENF01000019.1 Streptococcus intermedius B196 strain G1564, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1169 32 100.0 33 ................................ ACTGCTCGATTAGGGTTGTTAGGCTCTGGCAGA 1104 32 100.0 35 ................................ ACCAAAATATTATTCTCTCTTACAAGTAATTGCAG 1037 32 100.0 35 ................................ TGTGCTAAAAATCTGTTGAGTAGGCGGACTTTCCG 970 32 100.0 34 ................................ ATCTCAATAGTGATTATAATTATACAGACACGGA 904 32 100.0 33 ................................ AAATTCCAGCCTACTTCTCCTTGTGCGTGACGA 839 32 100.0 35 ................................ CAGTTAATTTTTTTCATTATTTGTCTCCTTTTTCC 772 32 100.0 37 ................................ AATCTTTAGGTGGAGATACCAATAAAGCAGCAGAAAT 703 32 100.0 38 ................................ TAAAATACACAGAGATTCCACTAAGTATCAAACTGTTC 633 32 100.0 36 ................................ ATCAGTTGGTTCATGAATATATAGAAACCAGAAAAA 565 32 100.0 35 ................................ ACTTGTTTCCCTAGCTACTCCTGAAGTAGCAAGCT 498 32 100.0 35 ................................ ATCAGCTTGTCTACCAATGCTTGAGAGAGGAAATA 431 32 100.0 36 ................................ CCAAAAAGAGCTGGACCAAAAGCGGCAAGGACATAG 363 32 100.0 35 ................................ ATAGCTTCTCTAAACATAGTGCCCAAGTTGTAAGT 296 32 100.0 33 ................................ AGATGAAGCTTATTTCTATACTTTAGTCAATTA 231 32 100.0 34 ................................ AAAAAGATGAAACGCGGCTGATTTTTGAAGCAAA 165 32 100.0 33 ................................ ACCACTCGTCACATACCCATCTGAAAGATATTG 100 32 100.0 34 ................................ AAAAACAGATATGATTCATGCTACTGGAGTCGTT 34 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 18 32 100.0 35 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCCATTCGTGGTGAACTGGAATCCTATCCGCCGTTTTTAATCTAGGAGTAAATTTATGATGGTTTTAATAACTTATGATGTTAATACGGAGACTGCTGCAGGTAGGAAACGTCTTCGATATGTTGCAAAACTCTGTGTTGATTACGGTCAGCGCGTACAAAATTCAGTTTTTGAATGTTCGGTAACTCCAGCGGAGTTTGTAGAAATAAAAAATAAATTGTTGACAATCATTGACCAAGAATCTGATAGCGTCCGATTTTACTTACTTGGCAAAAATTGGCAAAATCGCGTGGAAACCCTTGGTCAAGATGATAGTTATGACCCTGATGTGGGGGTATTACTTTTATAAAAACTTGTGTGCGAATCTAGGTTGCACATCAAAACCTAGAGCATTCGCGTTTTAAAACAGAAGATAATGACAAAAATCTAGTTTTTATTAAATGAAATAGCTCAATAAATTCTTATATTTAGTCACAAACGGTGCAACCATGCGCT # Right flank : TTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2340-1910 **** Predicted by CRISPRDetect 2.4 *** >NZ_UENF01000103.1 Streptococcus intermedius B196 strain G1564, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2339 32 100.0 35 ................................ AAGGTATTTGATGATTTCTTGCACCGGATTCCAAA 2272 32 100.0 34 ................................ TAGTCGAAATATCCAACTTATCTTAGCTCAAAAT 2206 32 100.0 33 ................................ TCCTTATATTTTAAACTAATAATTAACATTTCC 2141 32 100.0 35 ................................ ACAAGTTGGATAGGCTAAGCAGGTCTCAAAAAGAC 2074 32 100.0 35 ................................ TATAGCTGAAAACTTTACCATTAAGATAATTGGGT 2007 32 100.0 34 ................................ CTGAAGAGTATCGAAGTAGAATCAAACATCCACC 1941 32 90.6 0 A...............A.A............. | ========== ====== ====== ====== ================================ =================================== ================== 7 32 98.7 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : A # Right flank : TTTGATGAGTTTGTCTTTAAAAGTTTGAACGAGAAACTGTACCAAAAGTTAGGTTTGGATAAATAGCGAAGCAAACTAACATCTGAGGTCAGAGAGGTTCTAAACATACATATCTTAGGTAGAGTACTTGAAGTAATAAAATTCCCGATATTTCCAACAAAAAAACAGCTCAATAATAGAGTTGTTTTTTTTAAATTGTTAGCAAATCTAAATTTGGGGTTTGTGTTGTGTATATATCTCGATTTTTAAACTTCAAAATTATAGAGAGTGGTTGATAAGTAGCGCTCACCATTATCTGGGGCAAGAGCTAGAATTTTTTTACCTGTTCCTAATTTTTGGGCCACTTCAAGTGCAGCATAAATAGCTGCAGCAGAAGAAATACCTACCAGAAAACCTTCTTGTCCACCGATACGACGCCCAAGTTCAAGTGCTTGATCAGAAGTAACGCGGACAATGCCATCGTAAGCTTGAGTGTCTAGTGTTTCTGGGATAAAACCAGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //