Array 1 45202-50268 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQAP010000038.1 Shewanella algae strain LC2016-4 scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45202 28 100.0 32 ............................ ATTTTACTGAGCCTAACACGCAGTATGTTGCT 45262 28 100.0 32 ............................ TGATCTGTCAGTTCGGCCACGTTTATACATCC 45322 28 100.0 32 ............................ AGTGTAGGCATCAAGTCCAGCTGCCGAGAACC 45382 28 100.0 32 ............................ AATTGCAAATTTACCAGTTGATATCTCATTAG 45442 28 100.0 32 ............................ AATAGGATGGGTGGATCACCATTACACGGATG 45502 28 100.0 32 ............................ AGTGGGACAATGTTGGATCGGGTACTGCTTTA 45562 28 100.0 32 ............................ ACTACACCGACGGCATCATGCACCAGTGGGAC 45622 28 100.0 32 ............................ TGCTGATAAAGATGCCGAGTTGCACCGTTGGA 45682 28 100.0 32 ............................ AACTATGCGCTCAGACGCTTTACGCTCAACCC 45742 28 100.0 32 ............................ GACTTGGTTGAGTGCCAGCCGCTGAGTTACAC 45802 28 100.0 32 ............................ TCTTTAACGAGCCTATGTCCCATCGTATATTC 45862 28 100.0 32 ............................ CAGCACCAGCGCCCCAGTTTGGCGGTCAGGCC 45922 28 100.0 32 ............................ TAATCAAAGGTGAAAATAAAGAGGCATTTCAA 45982 28 100.0 32 ............................ ACAAGCTCATCGTGCATGTTGATTGCTAACTC 46042 28 100.0 32 ............................ TGCTCAATCGTGTCACTCAGCTTGCGCATCTT 46102 28 100.0 32 ............................ TATACGATGGCGGCGCGCTTGGCGGTGCTTAT 46162 28 100.0 32 ............................ TTTGATGAATGCCCACATGTTAACCTCTACTT 46222 28 100.0 32 ............................ ATCCATGTCGGAAATATCCGTCTTGCATATAT 46282 28 100.0 32 ............................ ACTAAATGACGAGCTGTTAGCCCACCATATCC 46342 28 100.0 32 ............................ GCTATTGATGCGGTACATGCCTTGCCTGGCGA 46402 28 100.0 32 ............................ TTGTCAACGTGGCTGTCCTAACTACAGGCTTT 46462 28 100.0 32 ............................ TTCATGTTGTTTTCCATGGATAACCGCATCAT 46522 28 100.0 32 ............................ TCTTGCTAACTTCCGTCACCTTGAGCGTGCGG 46582 28 100.0 32 ............................ TCATCAACGTGCGGCTCGTGCTGCTGAGAATG 46642 28 100.0 32 ............................ TGAAGAACCCAGCAACACCGGTGTCGTACAGT 46702 28 100.0 32 ............................ AATGCAACATATTTTGAAGTATTTTACAGAAT 46762 28 100.0 32 ............................ GTTATCGACGTGTTTCCAGTGAGGCTTAGTGT 46822 28 100.0 32 ............................ ATCGATAGCTCGTCAGCTACTTATGACACTAT 46882 28 100.0 32 ............................ ACTCAGCATACGTACAGTTATTGTTGTCAATA 46942 28 100.0 32 ............................ TTCACCCCGGCGTCGTAGATGCAGAACGCCCC 47002 28 100.0 32 ............................ ATCAAGACAAGAGGAAGCGCAAAGAAAGCGGC 47062 28 100.0 32 ............................ CAATGGGGATTTTCAGTGTGCTGTTTGTGAAG 47122 28 100.0 32 ............................ ATGTAGCGACGGTTATATTCGTCTTCGATGGT 47182 28 100.0 32 ............................ TAATAGGGGGCAATATGAAAGGGCTGTTTTCG 47242 28 100.0 32 ............................ CAGACAGGCGGTCAGGCATTAGGGGTCAGAGA 47302 28 100.0 32 ............................ TTGCCGAAAAAGAGCAGCGAATGCGCCAAACA 47362 28 100.0 32 ............................ ACATAGCCGTCAGGGACACCGCTGGTTTGGCT 47422 28 100.0 32 ............................ CAGATGAAATGGCCGCCGATAGCTCATTAACA 47482 28 100.0 32 ............................ GCAACGCGCGACAAGTGCGCCTTGATTCGATA 47542 28 100.0 32 ............................ TTAACTGCTCAAGATATGCCTCGGCTTGTTTT 47602 28 100.0 32 ............................ GCAGACTAGACAGACTGGCCATTCCAATCCTT 47662 28 100.0 32 ............................ GCTAATCATGGCGCTGAACTCTGCATACAGCT 47722 28 100.0 32 ............................ TTATCGCAATTCCAAGGACGATGGCGCGACAC 47782 28 100.0 32 ............................ AACAGCCGCTTGCGAGAGTATGTGGCGAAGAA 47842 28 100.0 32 ............................ AGTTTCAGGGATTTTTATGGTTTCGCGGATGT 47902 28 100.0 32 ............................ GCACTCGCCAAATTCATCCTTATTTTGTGGAT 47962 28 100.0 32 ............................ TTCATGGTTCCAGTAGAGCACATTTACCTTGA 48022 28 100.0 32 ............................ ACCTGCGACAGTGCCTAGTGAGCCAACTTATC 48082 28 100.0 32 ............................ AGTAAGCCTGCTGGTAATTGCGAACGCCTTTG 48142 28 100.0 32 ............................ TGTGGTATCGGCTGTGCTTTGAACCTGTCCGG 48202 28 100.0 32 ............................ TGGAATGCGGCGACCCGATACCGGATGCCAGA 48262 28 100.0 32 ............................ GCCCAGCCAGTACCCCGGCGTTGTTGCCGTGC 48322 28 100.0 32 ............................ TGTTGACCTATTGTAATACGGCAATTTCCTTG 48382 28 100.0 32 ............................ TACGCGAAATGAAGAGCAATCAGATATTGAGG 48442 28 100.0 32 ............................ CGCGGCACGTAAAGCCACAGCAGCCACGGCCA 48502 28 100.0 32 ............................ TATCATCGCTCAGCGGCTCAGGAACAAGAGAT 48562 28 100.0 32 ............................ GTCAATATCGAGCATGGCTTTGCAGTTCGTAG 48622 28 100.0 32 ............................ TTTTCGATGTTGCAATCACTTGGCAGCTGAGC 48682 28 100.0 32 ............................ AGGCATGCTTCCCACCTGAAAATATTGCCCAA 48742 28 100.0 32 ............................ TTATTGCAGTATTATTAGAAAAATAATTAATA 48802 28 100.0 32 ............................ TAACAGGGTGCCAAAGTGATGAGCAGGCAGAA 48862 28 100.0 32 ............................ TATGTATAGTTTTCTTTACGTTTGCAGGAAGT 48922 28 100.0 32 ............................ TCATCCCACGCCATGCCAATGTCGTTAGATTG 48982 28 100.0 32 ............................ ACCGAAGTGACAGTTACTGAACATACAGTCAG 49042 28 100.0 32 ............................ ACCAATAACGAACGGTACGGGGTTTTACACAA 49102 28 100.0 32 ............................ TGACGATGATGAAGAAGTACTGGCTCCAAGCA 49162 28 96.4 32 .............T.............. CGGACTTTGTTCGCATCGACGGCGTGCCGTAT 49222 28 100.0 32 ............................ TATACGGGCATGCTCGCTGGCCTCGTTGAAAC 49282 28 100.0 32 ............................ TTTCTGGTTTCCCTGGCCAACTCTGAAAACTC 49342 28 100.0 32 ............................ TGTGAAGAGCGCTGGCTATCAGTCGAAGGCTC 49402 28 100.0 32 ............................ CTGTTTGAGAACATGGCGCGCTGGTGTGATGA 49462 28 100.0 32 ............................ GCTTGGTGTGGAGCCTGACGGTTTTAAACCCC 49522 28 100.0 32 ............................ TGGGGCATTGGTTTCAGTCACCATGGCGTAAT 49582 28 100.0 32 ............................ ATTAGTCTTCCTGTTGGTTGGCTATTAATGTT 49642 28 100.0 32 ............................ TCATTGCGAAGAACGATGACGCCATGGCTATT 49702 28 100.0 32 ............................ GAATTGCCAACCTCGCTCCCTAACCCCCCAGA 49762 28 100.0 32 ............................ TTATATTCTGTTGCGACGAAGCAAAAATATTC 49822 28 100.0 32 ............................ ATGAAGATGATTCAATACATTTTGGGCGCTAC 49882 28 100.0 32 ............................ ATGCTGTGTGATAGTCAGTGCCTCGGTAGTAT 49942 28 100.0 32 ............................ CTTCATTGATGTTTAGGTCCATGAACGCGCTA 50002 28 100.0 31 ............................ TCAGCGTCCTTCGGCATTTTTTGAGCTTTGC 50061 28 100.0 32 ............................ TTTCTCAGGCCGAACTGGCGGCGCTACTTGGC 50121 28 100.0 32 ............................ CTACTTTGGTGAAACGATAGCGATCCATAGCT 50181 28 96.4 32 ..........A................. TGGCGCAGATAACGTGGGTCCACCCATTTGTA 50241 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 85 28 99.9 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACAGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCAGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGAACTTTTAAGTATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : AGTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGACTGAAGAGGCCGAAACTGAAGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGACCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGACGGGCGCCACTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGTCATGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTAACCGCGACTCTTTGGCTGCAGGCGACCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGATGGCCAGAAGGCAAACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 73718-72910 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQAP010000112.1 Shewanella algae strain LC2016-4 scaffold25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 73717 28 100.0 32 ............................ CATCGAATGACTGCGGCAATAGCCCCACCAAT 73657 28 100.0 32 ............................ GACAACTGTAAGGGAAAGCACTGTAACAATGA 73597 28 100.0 32 ............................ TGTTGAAGCGCCACTTTTGATAACCCTGAAAT 73537 28 100.0 32 ............................ GCATAGGTGAGATGCATGAGTGGCTAGAGCAG 73477 28 100.0 32 ............................ GCAGACGGCGGCAAAGCGCAGGGATATTTCCG 73417 28 100.0 32 ............................ ATAGTGCCGCTTCTTTGTGCGACTGCAAACCG 73357 28 100.0 32 ............................ ACGAACAATAGCGCCAGCGCGCCCAAAGATAG 73297 28 100.0 32 ............................ GTCTATGATCGGCAACTCATCTAATCGTGATT 73237 28 100.0 32 ............................ TTTAACTTGGCGCATCCTGGCTTCGTGGAATT 73177 28 100.0 32 ............................ AATAACCCGGCTTGGGTTTGGTATGACTTGGT 73117 28 100.0 32 ............................ TTTAAAAATGACTATCAAGAATGGAGCAAAGA 73057 28 100.0 32 ............................ TTTATGAACCAAGCCATGCTGGCATTCAAAAT 72997 28 100.0 32 ............................ AACACGCATGGACTCAATTTGAAGCTATTTTA 72937 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTGAACTGCCGAATAGGCAGCTGAAGAT # Left flank : TTTTCACACTCAGTGACATTTCAGAAGTCCCAGATACGTGTAAAGAAGTACGGTTTAAACGAAACCAAACCATCGCCAAGATATTTGCCGGGGACAGTAGAAGGCGATTAGCCCGTTTGAAAAGAAGAGCTGAAGCCAGAGGTAAGCATTTCACGCCTCCTATCCGGAACCAAGCCAAAGAGCTAGGCCCATTTCACTGCGTGGCGGTCAGCAGTGCAAGCACAAGCCAAGACTTTTTACTTCACATACAAAAAGAGACAGTGAATCAGGCGACATCGATTGAATTCAATCAATACGGACTCTCGACTAACCAAAAGTTCACCGGAACAGTGCCAGATCTGAGCCCATTCAAGCCGAACGATACCCGTTAACCCTTTTTTGTGAGCAACGCTTAACCGCCTGAATTTATGCCATTTTCTTCCGCATCTTTTTTAGATGGTAAAAATAGGATAAATTCATCAACCTATTGAACACTAGTGAAATTTTAAATAGTGCTCATA # Right flank : AAAAACAATCGTTTCGATGTTTAAGTTAATGCAAACAACTGCCGAATAGGCAGGGCTTGTTCTACTTACATGACAAGTGAAAGATGCCCCCTTAAGAGGGCATCTTTTTTTATGGGGTAGGCTAGGACAGGTTCTCCAGATCGTTCGTCGTTCAGGCGAATTATGGTTACACTGAGCTAGTACACACGCAGGTATAGAGCAAAGCGAATGGATACGGTACTGCGGCACAAAGTTTGGGAAGTCTATGTAAAAGAGAAAAGGCACCCGATCATTGCCTCGAAAATTACACAACCCAGCAGCGATGGGGTGCAACTACACGATGAAGCACTACTCAAACGCACCATAGCCGAACACACCCACGGTAACGAAACCTACATCACATGCTCTCAATGTGGCTGCGGGCTATTTTATCGCTCCGGCAACAACGCCCAACGCCGGGCAGCCCACCTTTATCACAACACCAAGTTCGCAAAAGACTTGTCACTCACAGAAAACTGCCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGAATAGGCAGCTGAAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //