Array 1 670340-668865 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009226.1 Campylobacter fetus subsp. testudinum strain pet-3 isolate pet-3-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 670339 30 100.0 35 .............................. CTATTCTTTTTAAAGCTTCATCAACATAGTTTTTT 670274 30 100.0 37 .............................. CTATTTTGCACACTCAAATTTAGCGTTTTTGGGTTTA 670207 30 100.0 36 .............................. CAATAATCTTAAGTTAAAACCAGCAATAAAACTTAC 670141 30 100.0 34 .............................. AAAATATTAAGGGTGTTCCCAGCAGAGATAAATT 670077 30 96.7 35 ..............C............... TTTTGCAGACGTAGAGGGCGATCTAATAATCGAGA 670012 30 96.7 36 ..............C............... AGCCAAACAGAATGCTAAAGAAGCGTATAGTAAAAT 669946 30 96.7 35 ..............C............... GCCATAGCGCTACCGATAAAAACAGCTATTGACTT 669881 30 100.0 36 .............................. AACAAGAAATTTATTTGAAGAGTTAGGAGAGTACGC 669815 30 100.0 36 .............................. AACACCAAAATAGGAGTTTATAAATATAGCTAATTT 669749 30 100.0 36 .............................. ATCATTTGCTACATTTTCTTCAAAAATCTTATCATC 669683 30 100.0 35 .............................. GCTAAGTTAGCACAAAAGCTAGTTGGCGTCACGCT 669618 30 100.0 37 .............................. ACACCAAATAGACCCTAACATAAAAGCAGTAATTCCT 669551 30 100.0 36 .............................. GGAGTGTCTGCAAGACGCATACATTGCAATACAAAC 669485 30 100.0 36 .............................. AAAAGGTATAGATGATATCTTAGCTGCATTAAAAGA 669419 30 100.0 36 .............................. CGTTAAAACTTCAAAGACTTTCAACGAAATTTCCGT 669353 30 96.7 34 ..............C............... TTAAAGTAGGTGCGGAATGCACGTACGCTTCTTT 669289 30 93.3 35 A.............C............... TAGCCATTTCATTCTCGTTTATAGAAGGCTTAACG 669224 30 100.0 36 .............................. TATCAGCAGAAACTAGAGAGCTGTTAGTTCTTTATA 669158 30 100.0 36 .............................. AAAAGGTATAGATGATATCTTAGCTGCATTAAGAGA 669092 30 100.0 36 .............................. ACTATCCCACGGACAAATTAGCCGCAATCTATGCTT 669026 30 100.0 36 .............................. ATCAACAAATTTAATAAATCGAGTTGTAAATATTTT 668960 30 100.0 36 .............................. AAAATTATTATTTGATGTTATAAATGTACCTGTAGT 668894 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 23 30 99.1 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTCAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGCTCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCGTTCGACAA # Right flank : CATAATAAACTCATCATCTAATTAAATTTAAAAAGAAATTTAATTAGAAATTAAAATAAGAAATAAATTTAAAAAACTATTTAAAACTATTGAAAATGGATTATTTGTTTTATATATAATATAGCTATAAATAATAAAAAAATAAATTTATTTTCCAATCTAAATTTAAAAAATAACAATAATAAGTTAAATATCATAAAAAACATTAAATTTAAACTATTTATCTATGTTTTTTAAAAGTTTAACTAAAATTAGGTTGGAAAAAGCTTAATGTAATATAAAATATAAATTTGTGATTGTTGGTGTGTAAATAGTTTTATTAATATGAATTTTGAGTTTAAATTTTAAATTTAAATTATTTGAACTTAAATTTTAATTTTGATTATCTAAATTTGATTATTTAAATTTGAACTTGAATTTAAATTTAGAATTATTTGGATTCGAATTATCTAAATTTAATAATTTAAATTTAAATTATTTGAACTTAAATTTTAATTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 674841-675399 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009226.1 Campylobacter fetus subsp. testudinum strain pet-3 isolate pet-3-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 674841 30 100.0 37 .............................. TTCGGCTAGGTCTACCGTTGGCATTACTTTAAAATTT 674908 30 100.0 36 .............................. TTGATATCAGTAGGCACGGTAACTTTAAATCCTATT 674974 30 100.0 37 .............................. TATTACTAGTTATGTGACTTGTATATATGCTTCCTAC 675041 30 100.0 35 .............................. GAAAGATACTTACCATTAGGAGAATAGTCATTGCT 675106 30 96.7 35 ...............G.............. ATAGCATTATGATAGTGTTTCCTACGTTTAAAGGC 675171 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 675237 30 96.7 36 ...............G.............. GAGCCAAAAAGAGAGCTAAAACTACTTTTTTCATCG 675303 30 96.7 37 ...............G.............. CTAAGACTTACACCTGTTTTTGATACATTAGAAAACA 675370 30 70.0 0 .......G..A....AGC.C..A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 95.2 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TTTTTGGGATTATAAAGATATGTTTGTATCCGACTTTAGGCGGTCTGGATTTTGTTAAAAATGAAATGTTTTTATAACTATCCCTCATTTCCTCACATTTTTCCTTTCATTTTCTCTTATATTTTTCTCATATTCTCATTTAAATTTAAATAATTTAAATTTAAAATTTAAAATTCATATTAATAAAACTATTTACACACCAACAATCACAAATTTATATTTTATATTACATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAAACATATATAAATAGTTTAAATTTAATGTTTTTTATGATATTTAACTTATTATTGTTATTTTTTAAATTTAGATTGGAAAATAAATTTATTTTTATTATTTATAGCTATATTATATATAAAACAAATAATCCATTTTCAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTTAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATG # Right flank : TCATATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAGAGTATAAATGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAACCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAAATGAAAAATACAAGCCCATTAAGCAAAGATGAAGTAGTTAAGCACATAGACAAAACTGGAGTGGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAATAAATATATAAACGCCTTTAGTGACAATGGGTATTTTATAGTTTTTAATGGTAATGAGATAGTGACTTGTTATAAGCCTAGCCAAAATAAAAAAGAGGCATTTGGTTACTTTAAAAATGCTTCAATAT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 685861-687008 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009226.1 Campylobacter fetus subsp. testudinum strain pet-3 isolate pet-3-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 685861 30 100.0 36 .............................. ACTACAGGTACATTTATAACATCAAATAATAATTTT 685927 30 100.0 36 .............................. ATACTTGTTAGGAAATTTGACTACGCTAAAACAAGA 685993 30 100.0 35 .............................. AGTTAAAAAAATGAGAGTAAGCCGTTTTTTGTAAT 686058 30 100.0 37 .............................. CTTTGATGATAACTTTTTGGCTCTTTTGTGTGATATT 686125 30 100.0 35 .............................. AGTCCTCCATAAATGAAAACGAAATGGCTACATAT 686190 30 100.0 36 .............................. AAAACTATTTTGAGTTATATTTTATGCCTATTTTAA 686256 30 100.0 36 .............................. AGAAATTTAGTATCGATATAATCGCACCTATACACG 686322 30 100.0 36 .............................. ACTCCAAAATCCTCGCCCTGAACGCTGCTAAAAGCT 686388 30 100.0 36 .............................. AGCCGATGAGCAAAGATGTGGCGGGTAAGATACTGG 686454 30 100.0 36 .............................. GGGAGTAAAAAATATTTTAATTTTACATCCCACCCA 686520 29 96.7 37 .....-........................ TTTAATTTTATGCTATCTTTTAAACTCATTTAAATCT 686586 30 96.7 35 ....A......................... TTTGCCATAACTAAGAGCATATTTTTTATATTCAT 686651 30 100.0 36 .............................. AGTGGGGGATATCGTTAAGCTCAAGAGCCCAACACA 686717 30 100.0 37 .............................. TCTTTGCTTACAGAACATTGTATCCCTTACTCTGAGT 686784 30 100.0 36 .............................. TAAGTAATGTTTTTGGTGTTGAAGATGACTATGACG 686850 30 96.7 36 ...............G.............. AAGTCTGCTTTAGTGGATCAGATAATAAATAATTAT 686916 30 93.3 33 .........................A..T. CCCTAATATAGCTATTAAAGGCTATCATATTTA 686979 30 73.3 0 ....A.....C....AG...A.A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 97.6 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TCCCTCATTTTCTTACATTTTTCCTTTCATTTTCTCTTATATTTTTCTCATATTCTCATTTATCTAATTTATCATTTAAATTTAAATAATCAAATTTAGATAATCAAAATTAAAATTTAAGTTCAAATAATTTAAATTTAAATTATTAAATTTAGATAATTAAAATTCAAGTTCATATTAATAACACTATTTACACACCAACAATCACAAATTTATATTTTATATTACATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAAACATATATAAATAGTTTAAATTTAATGTTTTTTATGATATTTAACTTATTATTGTTATTTTTTAAATTTAGATTGGAAAATAAATTTATTTTTTTATTATTTATAGCTATATTATATATAAAACAAATAATCCATTTTCAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTTAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATG # Right flank : TCATATAGAACGCTAAAGCAGAAGATGAGCTTTTTAGACATATTGATAGTATGGGTTATGAAAAAGTTGCTAAAGCAGATATCTATACACACGGACAAAGCGGATACATTAAACCCAGTAAAATAGAACTGATATCTGCTATGAATAATATTAGCAACCTTAAAACTAGTATTAACAACCCTATAAGGCAAGTTGCATTAAGTGGAAAAATTATCATCATATATCAAGATGAGAGAATTTGGACGGTTATTAAAAAAAATAGCGAAAAACAAGCAAAAGAGTACTTTAAAAACAACACGGAGAGTAAAATATGGAAAAGCGAAAGTTATATATTTGCATTGATGAAAAAGGCTGGCATATCACAGATGATAATAAAAAAAATAGTTGGTTAAACGACGATGAATTAGATGGAAGTTTTGCAGAAGTATTTGGCGTAAATGGCAAAATAGGCTTTTTAGGAGAGTGGGCGTGGAATGATAATTTTTTAAACTTAACAAGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //