Array 1 2988-2584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNGM010000077.1 Clostridium perfringens strain D52t1_170925_G9 NODE_77_length_9063_cov_11.3601, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2987 30 100.0 36 .............................. TAATCTTCCCAATAGTAAGTTTTTACCCCAGTAAGC 2921 30 100.0 36 .............................. GATAAATAAAAAAGAGCTATTGTATAATAGCTCTTT 2855 30 100.0 35 .............................. ATTAAAAAAGTTAGAAAAACTAAGTGGGATTATTT 2790 30 100.0 34 .............................. TATACAAAAGAAGTTTTAGGTAATAATAGAAAAA 2726 30 96.7 35 .........T.................... ACATATAAAAATAATGAATGCTATAAGAGATATTG 2661 30 96.7 19 .........T.................... AGCTATAAAGGATTTACAA Deletion [2613] 2612 29 80.0 0 .A.......T.....T........C-..C. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 96.2 33 ATTTAACTTCAACAAGTGTTGTATTGAAAT # Left flank : TAAAATTAAATCATTATGTTTAAGTAATAAAACCTCTCCTTCTTTTACAAGGTCTAATACTCCCCCTATATTTAATTTTAAAAGCTCTAAATCTAAAGGATTATTTAAAAGTATCTTTTTCATTTTTTCTCCTTTCAATTTAAAGTAATTTCGATATCATTATATTATTCTACTTTGACATTAGTCAAATAATAATGATTGCATAATTTTAGATATTTTCTGACAATTCAAAATTTTCATATATAAGTTTACTTAATAAACCTATATATCAACTTTTACTGTAATTGACAATAGTCAAATAAAAATATATAATTCTTTTATAAGTTTTACCAGTAATTTTTAATATAAAATATAGTAAAAGCATTGATACTTCTTTATTAGAAGATTCCTTGCAACATTTATAATATTAAGTTTATGATGATTGGTAAAATTCAATACAAATGTAGAATTATTCTAACTTGTAAAATTTTTTGTTTTTTAAGAATGGCTTATTTCCAAGC # Right flank : ATGAGAAATAGTAATTATATATCTATATAGTTGCTATTTTTTTATTAAAAAAAACTACTAAAAATATAAAAAATAAATTATAAAGGGGACTACATATGAAAAAAAAATAAAATAAGAAAAATATTAAGTAGAAAGATTAAAACTTTAATAGTAGCAGGTCTTGTAATTGCTTCAGGTACTTTCCTAATATCTAAATTAGCATGGAAAGGTAAAGACATCACTAATTCAAATAATAACAAAGTTACTACTGTAGGTAAAAAAATAGATAAATCTTTAGATGAATTACAGACAACAAAAAACAAAGAAGTTTCATGTAGTATAGAAAATCCATCTGATTTAGCTGATTATGAATATGCTGTTATAGACGATGAGCTTATTGAAAAGCAAATAAAAGATAGACAAAATAGTATTGACCCCGATGGTTGTACTGACCTTCGTGGTAGATACAATAATGAACCTTCCTGTGGTTCATGGAAAGATGACTTCAGAAAAAGAATGAC # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTCAACAAGTGTTGTATTGAAAT # Alternate repeat : ATTTAACTTTAACAAGTGTTGTATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 407-1289 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNGM010000105.1 Clostridium perfringens strain D52t1_170925_G9 NODE_105_length_4410_cov_7.95707, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 407 30 100.0 35 .............................. ATGTCGAACAAGGTTTGGTAGGCTTACTGGGGTAA 472 30 100.0 36 .............................. AGCATTTGATAGCTATCATAACAATTTCTTATGAAA 538 30 100.0 36 .............................. AAATCTGACAAGAAAAATGATGTATCAAAGTAGCAA 604 30 100.0 36 .............................. ACAAACAACTCCTTTCCAAAATTATCTCTATAATAA 670 30 100.0 37 .............................. TCGATTGTTGCAGTCGTATTATTAGTTTTAACTTTAA 735 30 96.7 37 T............................. TCCATTAAATTCATTATTCTGTGTTATATCAAAACCT 803 30 100.0 35 .............................. TTTGTTTCAAGAGATTTAGGACATAGCCTTGAGAG 868 30 100.0 36 .............................. TAACAATTTCGTATAAAATCGGATTGAACAAAATTA 934 30 100.0 36 .............................. ATTGTAATATTTCTTTTTAACTCGCTACTATTTTGT 1000 30 100.0 34 .............................. CTTCTATTCATCCTCATTGCTCTTGCATATTTAT 1064 30 96.7 36 ...............A.............. TATAAATGACTATTATCTTAATAAAAATTTAATAGA 1130 30 96.7 36 ...............A.............. GAAGCTTCAACAAGATTTGATATAAAACCATTTAAA 1196 30 96.7 35 ...............A.............. AGCACATTGTTTTTTCTATATAAAATATTAGAATT 1261 29 90.0 0 ...............A.........-..T. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 98.3 36 ATTTAACTTTAACAAGTGTTGTATTGAAAT # Left flank : CTATTATTATCTTAAGGATAAGAAAAGTTTTAATGATGTAATTTTAGAAATTAGAAACTCTAGTTTAAAATTAGATATGACTTTATTATATTTTATTTTTTGACTATTGTCAATAATAAATTTTTATCTGAAAAATTAGAATTTTCATATATACAATTACCTGATAAATCTATATACATTTCAAACGTAATTGACAAAATTATTGTTTAAATATATAATTTTTGTATGAGTTTTACCAGTAATTTTTAATAAAAATTATCTTAAAAGCATTGATATATCTTTATTTAAGCACTATTTAAGGCTTTTATAATATTAATTTTGCATTGACTGGTAAAATTTAATATAAATATAGGCACATTCTACTTTTAGAGTTTTTTTATTTTTTAAGAATGGCTTGTTTTCAAGTA # Right flank : TATGAAAATAGCAATTATATAGATATATAATTGCTATTTTTTATTTTAAAACCCTTTACTAATACAAAAAAGTTATAATTCTAATATTTCTCTCTATAATATATAAAAACTAAATTATAGAAAGGACTAAATATGAAAAAAAATAAAATACAAAAGATAATACATAGTAAAGGTTATGTAAGTATAGAAACTTTAATAGTAGCAGGGCTTATAATAGCCACAGGAGCTTTTTTAGTTTCAAAACTTGTATGGAAAGGTAAGGATGTAGCTATATCTTCTAATAATAATATGTCTACTATAGGTAAAACTATGGATGATAATTCATTCAATAATGGCTCAATAGGTGAATCTACTATTCCTGGTGGTGGAGGTGCTACTAATTCAGTTGTTTCACCTAAAGATATAGATTGTAGTTTAGTAGAAAATCCATCTGATTTATCTGATTATGAGTATCAAATTATAGATGATGACTATATTAATTCTGTAGTAAAAAAATATAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTGAAAT # Alternate repeat : ATTTAACTTTAACAAATGTTGTATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 30682-26127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNGM010000033.1 Clostridium perfringens strain D52t1_170925_G9 NODE_33_length_30831_cov_18.5047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 30681 30 100.0 36 .............................. TAAAGCCATTAGCAAGAAAGAGAAGGTGCTAAGCAA 30615 30 100.0 35 .............................. TATATTTTTGTGCAGTATAATAAATTCTTTTTCCA 30550 30 100.0 36 .............................. TGTTATTATGTAATTGTGGATAGGGTAAAGCGTTCA 30484 30 100.0 36 .............................. GCATAATGTAGAAAGTAATTTAAATATACTTTCAAA 30418 30 100.0 36 .............................. GTTAATCCAGTTTTATATAAGTTATTAATAAAATTT 30352 30 100.0 38 .............................. ATAAAGATGGCTGATACCATGGATGGTGGACTTGGTGG 30284 30 100.0 35 .............................. TTTTAATGTTTTTATACAACAATTTAATAACAATT 30219 30 100.0 35 .............................. ATCTCTTACCACAATAAGGGCATTGCCAATTCCAA 30154 30 100.0 36 .............................. AAGGGGCATATGCCCCTTTAATATTGGAGGAACTAA 30088 30 100.0 35 .............................. AAAAAGAAGGTGAAGGAAATGTTAAATTTATTAAC 30023 30 100.0 34 .............................. TTAATTATATAAAAATTTTTTAAAAAGGAAGGAT 29959 30 100.0 35 .............................. GTATATTAAGTTGAAATGTAAGGAAGTACTATAAA 29894 30 100.0 36 .............................. TAGAACAGTTCTTATTCAAAATATGGATGCTTCTTT 29828 30 100.0 35 .............................. GAAGATAAAAAACCATCTTTAAATACTGTAGAATC 29763 30 100.0 35 .............................. AAGGTGGCAAAATACCACCTAAAAAGCTATTATAT 29698 30 100.0 36 .............................. ATCTAAGCATAAATCAATAGTGCTTAATTCATCTAG 29632 30 100.0 35 .............................. GTTATGCCCGAGCCTGGGGAGAAAATTATAAAAGA 29567 30 100.0 34 .............................. AAGTTCTTTTTCTCAATTTGCTTTTTCTTACTTT 29503 30 100.0 34 .............................. TAAATGAAGTTAATAAATTTATTATGTCATCAAA 29439 30 100.0 36 .............................. TTCTCCATACATTAGCTTTAAGGCTGTATATATCTC 29373 30 100.0 37 .............................. CTGCTCTAACATTATTTCTACATCTGCAATTTCTTCA 29306 30 100.0 35 .............................. GCCTGGGGAACTTTATTGTAAAGGGGGTGGAAAAA 29241 30 100.0 34 .............................. ATAAAAAGAGTTAAAATCTTTAAAATCTAAACCG 29177 30 100.0 36 .............................. TATTGCTTCGGAATTACAGGAAGGACAAGTTTTTAA 29111 30 100.0 37 .............................. TTTGGATTTATTATATTCGAATTTGGAAATATCCTTT 29044 30 100.0 34 .............................. CAAAAAGCCGTTGGTTATAGCTTAACTGGAGATA 28980 30 100.0 36 .............................. TGTTATCTTAGATAAAGATTTAGGAGAACAGGGGTT 28914 30 100.0 37 .............................. GTTTGCATTATCCTTGTTATAATACAGTCTGTAGTTA 28847 30 100.0 35 .............................. TTTGTTCAATTTAATAATTATTACTTATTTTATTC 28782 30 100.0 36 .............................. ACTAGATAATAATAAAGGAAACTATAAAGCTGTTAA 28716 30 100.0 37 .............................. TAATTCCCTCCTTAAATACAGTTTGTAATTAACCAAA 28649 30 100.0 34 .............................. TTAATAGTAATTTAGATAGTTTAAAAAAATCTAT 28585 30 100.0 37 .............................. TTCCACCTGCTGTGGAGAAATAACCATACCTTGATTT 28518 30 100.0 35 .............................. ATAAAATTAAGGAGATGATTAATTATGTTAACTGC 28453 30 100.0 36 .............................. TTACTTCTTGCAAAGCTAAAAAAGGGGTGTTGATTT 28387 30 100.0 36 .............................. CTAATTCCCCTAATCAATAACAATACATTTTTATAA 28321 30 100.0 37 .............................. TTAAGCTCATTAAATAATATTTAAAGACTATATAAAT 28254 30 100.0 35 .............................. TCTAAGCATAAATCAATAGTACATAATTCATCTAG 28189 30 100.0 36 .............................. TTTCTAAAATCATTATAAACAACATCATAATCAGTC 28123 30 100.0 36 .............................. AAATATTACTTCTAGTATTATTAAAATTTTATCTAT 28057 30 100.0 36 .............................. TATTTATATGTATCTGATTTTGTATATCCACAACTT 27991 30 100.0 34 .............................. TTCTCTTTCTATAGTGTTAAATAGATTATTCTCT 27927 30 100.0 36 .............................. TGTTGTTTCTATACCTACTGCTAAAGATTTTTTAGA 27861 30 100.0 34 .............................. TAGGTGGCTTGATGGCACTAGTTCAAGGAGACAA 27797 30 100.0 37 .............................. GGAATTTACCAAAGGACAAAATAGACAACTTTGTAAA 27730 30 100.0 34 .............................. AAGTTGAAAGTGCCTTGCTACCTTATGGAATGCC 27666 30 100.0 35 .............................. ATACGACATTGTCGTAAAATTAAGGGGGTATAACA 27601 30 100.0 36 .............................. AATTTCAAGAAATTTATCTTTTCTAGGATTACCAGT 27535 30 100.0 34 .............................. GTAGTCAAGATAGTAAAGTCGCTATAGGGACTAG 27471 30 100.0 37 .............................. AAGTCTTTTGCTATTACTTTATTATTATTAATAAAAA 27404 30 100.0 37 .............................. TGTCCATGCTCCGTTGCTATATTCCTTATAGACTTCG 27337 30 100.0 37 .............................. TAAAACTATCTAAATTCTTTCTCTCATATGTTTTCGC 27270 30 100.0 36 .............................. TGTTACCCACAATAAACATCTCCTTTAAGCTATTTT 27204 30 100.0 35 .............................. ACAACTTTAAATAACGGCAATAAAGATTTAATTTT 27139 30 100.0 36 .............................. TCAAGATTTTGAGAAAAAAGTAACTAAAATATTATT 27073 30 100.0 34 .............................. TTCCTTCATGTACAGAGTTATCTAGGCAAAGTGA 27009 30 100.0 35 .............................. GCTACTCAACATGCAGTAGGAGCTTGTGCATACAT 26944 30 100.0 36 .............................. GAGATAAAATACATATATTGAAGGAGTTGTTTAAAA 26878 30 100.0 36 .............................. AAAATATTTTCTATTTCTACTGCAGCAGGATTAGAC 26812 30 100.0 35 .............................. AATAATAAGGTTGGTGCTGTTTTCTTTAATAATGC 26747 30 100.0 36 .............................. CTGACATATTATACATAATTCAAAATTGCTTAAAAC 26681 30 100.0 34 .............................. CTCTAAAATTGTTTTAATATCGTTATACATTTTC 26617 30 100.0 36 .............................. ATGAAACACCTGGAATCTTTTTATATATCCATTCAA 26551 30 100.0 36 .............................. ACAATTCTCTATAATCTATAAAACCTTTATCCCATA 26485 30 100.0 36 .............................. GTTTTTATAACTTCAATATTTTTCGCATGAAACTTT 26419 30 100.0 36 .............................. TTTTAAAATCAGATATATAATCCAAACCATTACCAT 26353 30 100.0 35 .............................. GGTACTAGTTATATTCTTATTCATGTTTTAGGAGA 26288 30 100.0 36 .............................. TCTAAATTTGAGTTTTTTTCGTGTTCAAAATATAAA 26222 30 100.0 36 .............................. TTGTATTTCACTATTAGTTTTTTTATCAAATATAAC 26156 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 70 30 100.0 36 ATTTAAATACATACCATGTTAAAGTTCAAT # Left flank : TTTAATAAAATATTAGTTAATAATATAAATATTTTAATCAACTTAGAAACATAGCAATATACCTATTCCAATAATTTAATATTTAAAGTCCTTATATAAAAATATATATATCAATTTTATTCATAAAATATATATTTTGCGAAGTTATT # Right flank : GCTTGTAAAATAGCCATTTCTTTTTCTTGATATTTATCTTTAAGTTAGTTATTTCAACACTTCTCTTATTATTTTACCAGTGTTTCATTTTAATTTAAAGCACCAATATAAAATCAACTTGTAATCTAGTTATTTCAAGGTCTGAAAGGTGATTTTATATGATTTTAGGCTGGTAAAATTTTATTTGTGTATTTATAGATGTTTCTAAGAATGCATTAATTAAACACTAAAATTTACATATTCAGTAAACTTCAAATTTTTATCAGTGAATTGATTTAGCCCTTATACTATGCTAAAATTAACTTATAATTTTGAATTTGTTAATTAAAACTTAATAATATAAAGTTTTCTAGGGTTCCGTAGCTTTTTAGTTAGTCTGGTCCAAGAGAAAACGCACAGATAAACTGTGAACACGGAAGGATAAAAGCCTGGGAGATATTTTTATAATATTTCTCTGGCTTTTTTATTTTAAAGGAGGTATATTGTTATGAAAAAGTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATACCATGTTAAAGTTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [75.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 3298-446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNGM010000061.1 Clostridium perfringens strain D52t1_170925_G9 NODE_61_length_13209_cov_15.9709, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3297 30 100.0 36 .............................. TAAGAAAGTTGGCCACAACTGACTGGAACTTCACCG 3231 30 100.0 36 .............................. CTATCCACCACACCCCTTATCTTATTAGCTAAGTCG 3165 30 100.0 34 .............................. TTAAAGCTTCTGTAACAGAGAGAAATGAAGATAA 3101 30 100.0 35 .............................. CATTAAGAATGCTTTACTTCTTATAAGGGGTACAA 3036 30 100.0 36 .............................. GTACCGTCTACTGGTTTAGATTCTCCACCCATCTCC 2970 30 100.0 36 .............................. TTATTAATTTTAGATAAAGCTTTTTGAAGTTCTTTG 2904 30 100.0 34 .............................. TAAATCAATTGAACTACTTCTTCTACGTCTTCTT 2840 30 100.0 36 .............................. TTATAAAAATGTATTGTTATTGATTAGGGGAATTAG 2774 30 100.0 35 .............................. AAATTTAACATAATAAATACCTCCAACTCATAAAA 2709 30 100.0 36 .............................. GTGTTAGCATCATTTCCACCAGTAGTAAATATTCCT 2643 30 100.0 35 .............................. TGAATATCAGTATCTAGTTTAGATGAACCGTATGT 2578 30 100.0 35 .............................. GAACAAAATTCAGCAATAGGATGTGGCACTAGAAG 2513 30 100.0 35 .............................. GCAACTTTATGAAATAGAATTAAGATGTAAAGATA 2448 30 100.0 36 .............................. AGTCAATCTACAGATGTTTATGATAGTAATAGTAGT 2382 30 100.0 36 .............................. TTTAATTCTATTATATCTGTAACTTTAAACAATGTT 2316 30 100.0 36 .............................. TTTAATTCTATTATATCTGTAACTTTAAACAATGTT 2250 30 100.0 36 .............................. TTTAATTCTATTATATCTGTAACTTTAAACAATGTT 2184 30 100.0 35 .............................. TTTTTTAATGCTAAATTAAATAAATATACACATGG 2119 30 100.0 36 .............................. ATTGAAAAAATAAATGAAACAACCATATATAATAAT 2053 30 100.0 35 .............................. ATATTTCTATTGAGAAATTCTAATTTGTCTTTTAT 1988 30 100.0 36 .............................. AGTATTATCTATAACTTGCTTATTAACAACAGGCTT 1922 30 100.0 36 .............................. ATTATTTTAAATATTCCACCACCAAACAATAAATTT 1856 30 100.0 36 .............................. GCGGAATTAAAAGAGAAATGGCAAAGTTGCTTAAAT 1790 30 100.0 35 .............................. TATATAGAAACTAAAACAGTTTATATAGATAGAGA 1725 30 100.0 36 .............................. TATGATTTAAACAAGTTCTTATTATTACTTAAAATA 1659 30 100.0 35 .............................. TTTGTTACATCTGTTGTTATTTGCACTACTAAATC 1594 30 100.0 35 .............................. ATAATCCCTGATGTAACATGAGCATTTTCTATAGT 1529 30 100.0 35 .............................. ATTTTAAATATTATGTAATGTAAATTGTTGTCTAA 1464 30 100.0 37 .............................. TTTTCTCCATTTATAGATTGAACTGCATTTGTAACGG 1397 30 96.7 36 ......T....................... AATTGACTCATTCTTAAAGCAACTGCTTTCTTTTTA 1331 30 100.0 36 .............................. AAGGTATAATATTTTCCTCTCTCAGATTTTAGTATT 1265 30 100.0 35 .............................. TCCCAAGCAAAAACGCAAGGTTTATCATACTCTTC 1200 30 100.0 36 .............................. TCGCCTGTAATTTTTATATATAGATCTTTTAATTTT 1134 30 100.0 36 .............................. CGTGAAACTATTTGTAATTAATTTTTATTTTTGTTT 1068 30 100.0 36 .............................. TACTAATGAAGTTGCTGTTGATTCTTCTAAGGTTTC 1002 30 100.0 34 .............................. CTTTCTCTATTTGCTAACATTTGTCTATTAACAA 938 30 100.0 37 .............................. TATGCTAATTGGATTAAATCTTTATCTCCTTTTATAG 871 30 100.0 36 .............................. TGGTCTTAGTAATGTAAGCTCCTACGTTTTTAACAA 805 30 100.0 36 .............................. CACGCTTGTATATTTCTTTCAGTAAGAATAGCACTA 739 30 100.0 36 .............................. TTCTTAAAATAGGATTTAATGAATAAGCAGTGTTTG 673 30 100.0 36 .............................. TCTGGAACTTCGGCTTTAGGTATAAGTCTTAAAATA 607 30 100.0 36 .............................. AAATATTTAATGTTAACTAGAGTATATGATGTGTTA 541 30 100.0 36 .............................. ACAGTTGAATAAGCAGGAAAAGTAAAACTATAATAA 475 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 44 30 99.9 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : TGTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTTAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAGTTTGTGAAATCCTTGAAATAACTAAGTTTTAGGTTGATTTTAGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATCATAGTATAAGTATTGAAATAACTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTAAAAGT # Right flank : TCATATGTAATTTCTTTAGGGAGTGAAGAGACCAGTGTTCGTCGTTTAAATTTAGCACAAGCTTTTAATCCTATTGGTTCATTAGCTGGTATTATAATGGCTAAATATATAATACTAGGGAATTTACATCCAGCAACTTATGAAGAGAGAGTTGCTATGGGATCAGAGGCCTTAAGTAAAATACAAAATAATGAATTAATATGGGTATGTGTACCATATGTTAGTTTAGTAGTTATAGCTATAATAATTTGGTGCTTCTTTAAGAAAAGTAAAGGTTCAGAAAAAGATGATTCAGGAGAACTTAATATAATTGAATCAATAAAGAAATTAGTAAAAATTCCACGTTATGCTTTTGGAGTAATCACACAATTTTTCTATGTTGGAGTTCAAATAGCTGTTTGGACTTGGACTATAAAATATGTAATGGTTACTGTTGGTATAGATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //