Array 1 60438-63406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBMS010000006.1 Eggerthella lenta strain MSK.23.99 LMOILJAC_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 60438 33 100.0 34 ................................. ATGCCCGGTGACGCATCTCCCATCATCTCCGGCA 60505 33 100.0 33 ................................. AGGAACGTGAAGCCGCGCGTGAGCTTCGTCATG 60571 33 100.0 33 ................................. GAGACGGTCGCCCGATCGTCCGATGACGGGGAG 60637 33 100.0 33 ................................. ATCACTCGCAGCATCTTGGGAAACCTCCTTTTC 60703 33 100.0 34 ................................. CGTCGCGTGGTGCAGGGCGCGCAAACGCTGTCCA 60770 33 100.0 35 ................................. AGCTCCAATACCATTTTAAATTTTACTTCCAACGG 60838 33 100.0 38 ................................. AACGAACGCTCCGACATTGACGGCATCTCCCGTAGGGA 60909 33 100.0 35 ................................. TCCAGCGCGCTCATGATGGTGGCCCAGTCCATGGC 60977 33 100.0 33 ................................. TTCGCAGCCGCGCCTTTCGTGGCCATGTCTCGC 61043 33 97.0 34 ......T.......................... ACTCCGAGCGACTCGCCCGTGCGGGCGCTGCCGA 61110 33 100.0 34 ................................. TTGGCCGCTCATCGGTACAGACCAATCGCAGGAA 61177 33 100.0 33 ................................. GTTGTCAAGCTCTGCTTCGCCTCCCAGTCAATG 61243 33 100.0 33 ................................. GGCCAGCAGCGCGACGCAGCGCCTCATGGCGAC 61309 33 100.0 33 ................................. CTGTAATGCCTGATCTGTTTGCCGATGTACTCA 61375 33 100.0 33 ................................. GAGAGCGCGGAGCATATGACGCAGTGCGTCTGC 61441 33 100.0 33 ................................. GTCAACGCCGGTGGCACGTGGCCTGCGTCCCTG 61507 33 100.0 32 ................................. ACGCGGCTGCCGTCCTCCATGCGCGCGTCCAT 61572 33 100.0 33 ................................. GAGACCGAAAGCCGCGATTCGTCGAGCATCGTC 61638 33 100.0 35 ................................. GCTTTCGTCTGCTACCTGCTCGTCAGGGATGCGCG 61706 33 100.0 33 ................................. CGCCTGCTTTGCAGGGTCTTGCAGATCGGCGGT 61772 33 100.0 35 ................................. TCCTTGACGTAGAGATAGCGAAACTTGCCGTAACG 61840 33 100.0 33 ................................. AACTTTATCACACTGTCTCGGCTCGATAGCTCC 61906 33 100.0 34 ................................. AAGCGCGGGATGCTCGTTGATCTTGTCTACTACA 61973 33 100.0 34 ................................. CGGCATGGACGGCGATGATCTTGTTGAGGGCGTG 62040 33 100.0 33 ................................. GGATGCGAACCAGAAGAGCTCTACGGTCTCAAG 62106 33 100.0 34 ................................. CATACTGTGAAAGGGGTATAGCCAGGTTCGACGG 62173 33 100.0 34 ................................. CGTCTGGTGATCTCGTCCATTCGATCTGCTCCCT 62240 33 100.0 33 ................................. CGTATCCCAGTACTACCCTGCGGTCGCTGGCGG 62306 33 100.0 33 ................................. TGCCATGCCCTGACCCCTTCAACGGTGGACATC 62372 33 100.0 33 ................................. CGACCTTGCGCGAGACGATGCCCGAACCGTCGG 62438 33 100.0 35 ................................. TCTCCGCTTTCGTCTCGCGGCCATTCCATCCCCGG 62506 33 100.0 34 ................................. CACGCACCCACCATGTGATAGCTGGTCGATCTGT 62573 33 100.0 35 ................................. ACGTTGACCTACGCTGAGAACATGCAGGACAATTC 62641 33 100.0 34 ................................. GTCTCTGCTGGAAGCCAATCGGTCTACATCGAAA 62708 33 100.0 35 ................................. GGGCATATCGGCATAGCATGGTACGAGGAAGCCGA 62776 33 100.0 33 ................................. AACAGAATGTCCTCGTCGTGGGCGCTGAAGCCG 62842 33 97.0 33 .....................A........... TGACGAGTATCGCCTATGGCTTGAAAGCGAGGT 62908 33 100.0 33 ................................. AAGCACACCACCAAGCAGACGCGCAGCCTCATA 62974 33 100.0 34 ................................. GTCATCTAGGACGTTGCCGGAAACGACATCCTGC 63041 33 100.0 34 ................................. GTGCCTCACCGGCCGGCACGTACGCTCGCGCACG 63108 33 100.0 34 ................................. CAGAACTTCGCGATGGCGAAGCAGAGCGGCTACG 63175 33 100.0 35 ................................. GTCCCCGTCGGCGGCTTGGTGTCCATGCTGATGAT 63243 33 100.0 33 ................................. TCGTCCTCGCTGAGGAAGTAGGGGTCGAGCGAG 63309 33 100.0 32 ................................. AAACGGTTGAACGATTTGCGGACGCTGGCGAG 63374 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ====================================== ================== 45 33 99.8 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : TGCGCTGCGATCTAGACGGCTACCCGCCGTTTCTATGGAAGTGAGATGGTTGGCATGCTGACAGTGATTACCTACGACGTGAATACCGAGGATCCGGCGGGCCGACGTCGCTTGCGGAAAGTGGCGCGACATTGCGTCAATTACGGTCAGCGTGTCCAGAACTCAGTGTTCGAATGCGTTGCCGATGCTGCGACGATGGTTCGTATCAAGAGCGAGCTCGTCGAGCTGATCGATCCGGAGAAAGATAGTTTGCGATTCTACAGTCTTGGAAACAAATATGAGACGAAGATTGAGCATGTAGGTGCGAAACCAACGTACGAAGCTGAAGGGTTCTTGGCGTTGTAGGACCATGGTGCGAGCATGAAGCTCGCATATGACATACGTGAGGTTCGCACCAAATAGTGTGACATAAAGATGCCTGACGCGCTTGTTGCGTGTACCTTGTTTGTCTAATGACACTATATGTTGATCGAAGCAGTAAATTTGCACATAATATTGCA # Right flank : CTGTTCGGGTTGGCTGGCAAGCTGAACGCTGACACGTCATCGTTCAGCTTGCGGGCGCGCGGGTTGAAGTCGCGAGCAGCTGTCGTGGTACGGCCGAGGCGTGGTCGGTCGTACCCCTCGCGGGCGCGCGGGTAGAAGCAGGGTATCCGGGTTGAAATCGAGCAGCGTTTCGGCAGGTTCTGTCGCTCTCAAACGAGGGGGTAACCGATCCTTGCCGTCGCTTCCTATCGAGACGCGGATTGATTCGCTGATTCCGAGTTTTGCTCGTCGGACGCCTGCGCCGAGTTGTGAAAGGCGCAGGCGTCCTTCGGATCGCTACTCCACCACCAAATCAACGAGCTCAAACGTCGTGCAGTCCACCAGCCCGCGATTCGTCAGCCGCAGCTCGGGCAGGCATGCCAGCGGGATCAGGGCCATCGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAGGCATGCACCTTCTCGCTCATCGTCACAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //