Array 1 45765-46608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIVI010000036.1 Clostridioides difficile strain JV65 033 JV65_contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 45765 29 100.0 37 ............................. CAATATATCTTGGCAGGTGCAGATTTAGGAGCATTAC 45831 29 100.0 37 ............................. TTTGATTGTGTTGCTACTCTTAATAGCTTTTACTACT 45897 29 100.0 36 ............................. TTTTTTCAAGCATTTGTAAATGCGATTATTGTAGGT 45962 29 100.0 37 ............................. ATTAGAGTTTAAAATAAAAAATGATAATGTTCTTAGT 46028 29 100.0 36 ............................. TTGTAAATGGTGATATTGGATCTATAGTTGTAAATA 46093 29 100.0 36 ............................. TACAGAAAGGAATATTTTAATTAATTAGGAGGATAA 46158 29 100.0 37 ............................. ATAGGAAAATAGAGATAGGTTCACAATCTAATGATAG 46224 29 100.0 38 ............................. ATTTTTTCTTTTAGTTTTTTAGGAACTGGTAATCCACA 46291 29 100.0 36 ............................. TTCTGAATCATATGAAAACAAAATCTTATTTGTATT 46356 29 96.6 35 ...........................G. GAAATTATTAATGTTATTTCTACTCTTGCAGTTGC 46420 29 93.1 46 .......................A....G CATAGTCTATTGAACATTTATTAAGAGATAACTTTCGTTTTATATA 46495 29 79.3 55 ...........G...TA.T.A..T..... GTTTCACTATTGGACAACGGAAGTTTTTTCAGTGAGTAAAGATTGAATCACTTTA 46579 29 72.4 0 TA.....C....T..T...A...A...T. | A [46598] ========== ====== ====== ====== ============================= ======================================================= ================== 13 29 95.5 39 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : GACAGTCAGTTTTTTGTTTATCTGAATAATATTTTACTTAAATTATTAGAGGTCTTTTTGTACATTTCTTCTAAAACATAAGAATATATATTCATAGTTAGTTTTAAATCTGTATGACAAAATCTTTCAGAAACTATTTTCATATTAGTTCCTACCAAATGTAACAAACTAGCACCTGTATATCTTAAATTATGTATTTTCATTTGTCATTAGGTATTTTTAATACATTATATAACTATGATTTTATTATTTGAAATCTAAGTTATAAATACTATTGATGATAGAGTAATTGTATACAAAAATATATAATATATTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAAATATGTTTAAGCATTGAAATGTAAGGTATTGATAGTGATTGATAAACATTATCATTTGCACTACTGTTCGCTCACTGCAAATTTAAGAGAATTGCATATGTGTGAGTATTGGAAATTCTACGTTTATTTTAGG # Right flank : TATTATCTTATTTCTATTTGTAACTTTTTTAAGTATGTATTGTCCAGTTGTAATTTGTTTTTATTATTTTAAACTTTCAATTCCAAAATTATCTAATATAATTGAATTAACTTACTTTCTTTTTTTATTTTACCTCCTTGTTCTCTAATTAATTTATACATTTTATTTATATTTAAGAATACATACTCTAATTTGATTACATAAAATAAAATGTTTTTCTACTATAAATTAAACTCTTTAAAAAATATGACTCAACTACTTTAATTTTTATTCTAATGATACATTAATTCTAGACATAATAAAACTCTCCTAGCTAGATGATTTTACATGTTTTAACTATCTCCTAAAAAAGTATAGTTTGATAAAAAGAGCATTTTTATATAAGCACCATACTTTTATTGTGGAAGATAATTATTTTATGAGGTATTGAAAACTTACATAAAATCTGTGGATAAAAACTCATACTTTCATTTTACTGACATACATCTAAACATAATAAT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6171-6459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIVI010000048.1 Clostridioides difficile strain JV65 033 JV65_contig_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 6171 27 100.0 39 ........................... ACTAATTGGATTATTAATAACATTATTAGGAACGGGAGC 6237 27 100.0 39 ........................... ATAAGATGATAATAATTTTACAATAAATATCAATCTAGG 6303 27 92.6 38 ............C.........A.... ACGATTAATGCATTTATAGCAATTATAGCGATACCAAT 6368 27 85.2 38 ........A...CT........A.... TTTGTAACACAAGTTTGGAGCGCTACTTTAGCTACGCT 6433 27 81.5 0 ........A...C..T......A...T | ========== ====== ====== ====== =========================== ======================================= ================== 5 27 91.9 39 ATTTACATTCCATATAGTTAATCTAAA # Left flank : AAACAATATTTTTCCTAATTTGTGGTATAATAAAAGCAAGAAGAACTACAATCTATTTAAGACTAGAGTGGAGTTCGTAAATTAGTGTTTCTTTTTGAACTTAATCTTTAGTTCAAAACTAAAGTCACTCTGGCCGGAGTGGCTTTTTGCTTTTTTGATACATATACAAATTATGTAACCGATTAGACTAGCTGTTAAACTAGCTAATACGCTAATCAAAAAGTTATCCATACATATACACCTCCCTTCTACACATTGGGAGGATAATCTTTTGTATGAACTCCACTCTATAAATTGTAGATTACATCTTCTTGCTACAACTATTATAGCACATAATTCTTACATATTTTACCAATTTATTACTTTTTACATTATAATCACATCCTTTCAATAAAAAAACACCTACCTAAGTAAGTGCTTTCTTTTTCTATTTAGTTTTTCTCCACATAGTTAATATAAAACTCTAACAGCAACAGCAAAAGTATTAAATGCTTACAAGA # Right flank : TTCTGTACTTATATTATATCATTTTTTAACATATAAAGCACTTGAAACGAAAGAATATTCAAGTGCTTTGTTTGTTTATACTTATTTACCTTCTATATGTTATAAATTCAGTAATTCTTTTTTCTTAGCATTAAATTCTTCTTCTGTAATTGCCTGCATGTCTAGCAATTCTTTTAATGTTTTTATTTGCTGCAATGGGTCAATAGTATTATTTCCCTCAACTACAGGTTTATTTATATCTTCACTTTTGTTATTATTTCTGTATTCAACTAATTTTTCATATATAGTTGCACAAGCATTTGCATTTTTCTTAAAAGACAGTATAAAATCTTTGCATTCTATTATTAAGTATTCTTCTGTTTTAACTTGCTTCTTTTTCATTGCAAGAGCGAATGGTCCAAACAAAGCTATCCTAGTGGCTGTATATCTTCTAATAACTTCTTCTTCTTTTTCAATGGAAACTGTTTTTATATCTGAATATAAGATTTCAAATACATCAA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCATATAGTTAATCTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 744-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIVI010000071.1 Clostridioides difficile strain JV65 033 JV65_contig_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 743 29 100.0 36 ............................. TCAATTTAATGTAAATGTTATTAGATTCCAATTCCA 678 29 100.0 37 ............................. GTGTTTATGCATTAATATATAATGTATAAACGTGATA 612 29 100.0 37 ............................. TAGTTGCCACATCCCTCTTATATTCTTCTTTTTCATC 546 29 100.0 36 ............................. TATCAGTATAATCATCTTCAATGCCGTATAATTCTA 481 29 100.0 35 ............................. TTGCTTGTAACTTCATCTGTTGTAGAACCAGCAGG 417 29 100.0 36 ............................. TTCAAGTGAGGTAGGAGAAGTGAATGGTTTTGATAG 352 29 100.0 36 ............................. CTATATTTAGAGAATTGTTGTATGAGTATAAAGAAA 287 29 100.0 37 ............................. AAAGTTAGTACAAATACAGATTTATCATCATCAAAAG 221 29 100.0 36 ............................. TGCAAGTAGTGGTTTAATCTAGGTTCGATTCCTAGA 156 29 100.0 35 ............................. ACGTTTAGTTTTAAAAAGGAACTTGAATTAGCTAC 92 29 100.0 37 ............................. AAAGACTATAACTGGAGACACTGGAAGTTTTACAATC 26 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 99.1 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGAGAGGATTCAATCTATATTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGCTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGACATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGTTTGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : A # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 214623-213536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIVI010000009.1 Clostridioides difficile strain JV65 033 JV65_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 214622 29 100.0 38 ............................. TCATTTATGTATGCTCCAAACGAAGTCATACCTCTTAT 214555 29 100.0 36 ............................. AAACAACTTAAAGATATAAATATTAAAAAAGGTGAT 214490 29 100.0 37 ............................. AATGCAAAAGAAGCAATTTGTAAGTATTTAAAAGTAA 214424 29 100.0 37 ............................. ACAGCATATATAGGCTTACCTTTAACAAGATATTGCA 214358 29 100.0 37 ............................. TATGTAATTTTAAAGTTATGTTTGAAAGACTTCTTAA 214292 29 100.0 36 ............................. ACAGTAATTTTAGCAACTTTAAAAGACATACAAGAG 214227 29 100.0 38 ............................. ACAATTTCTTTATATTCACTTGCTGTTATCTTATTCTT 214160 29 100.0 37 ............................. AAAGATAGTTTAAATGATAGATATGTTTTTTGGATAG 214094 29 100.0 37 ............................. AACTGAATCTCTTCTCTATTTGCTGTAACTTTAGCTT 214028 29 100.0 38 ............................. GGATTTTATAAATTAGAAGAGAAATATTCTACGCGCAT 213961 29 100.0 37 ............................. GAGATAAGTTCTTCTTTTATTTCAATTACATTTAAAC 213895 29 100.0 37 ............................. GAATGGCTAATGCTGTATTAGGCATTATAAGAAGTAT 213829 29 100.0 37 ............................. TATAAACAATTAAGTTACTTTGAAAACTAAATACAGA 213763 29 100.0 37 ............................. TTTTATAAATTTGCATTAAAAAGCACCTACTTTTTTT 213697 29 100.0 37 ............................. ATACAGGAACAGGAGTCGGAACAGAAAAAAACGCCTC 213631 29 96.6 37 A............................ GTTGTATTACCTCTGTAATTATTTTTTCCAAAATTAC 213565 29 82.8 0 .C.............A......AT.T... | G [213544] ========== ====== ====== ====== ============================= ====================================== ================== 17 29 98.8 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : CTACAATTTATAGAGTGGAGTTCATACAAAAGATAATCCTCCCAACGTATAGAAGGGAGGTGAATATGTATGGATAATTTTTTACAAGGTATATTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAACTAGTAAGTTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAGAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTGCAGATATTCAAAAATAATATTTTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTGAATAAAATAGGGCTTAAGCATTGAAATATAAGGCGTTGAAGATGTATGATAAGTGTTATCATTTGCACCACTGCTCGCTCACTGCAAATTTTAGAGTGTTGCATATGTGTAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : AAGTTACAATGAGTACAAGAATGTTTCTATTTATTGTAACTTTTTTTATTACAAACTTAAATTTATAGTATATTATAAAAATCATTATAAAAAGATGATTTAATAAAAAAATATAATTAAAAAAACGATTAATAATCTATAAAAATGGAAAAAACATCCAATATCCTACAAAAATAGATTTTTTTATTACAATTACAAGTTTTTATTGCATCTATTTAGCAAAAGTATTATTATGCAAGTAAGATAATTATCAAAGACAATTCTGAATAGTCTGATTTAAAAGATACAATTAAAGGATATAAATAGGAATAATTTATAAATATTACAGAAGATTTATAACTAAAATTACGAACGTAAGTTTGTTATATGGGGTAGTTGTGTGGATGAATCAAATAAATTAATATTAGAATTGAATAATATTTTCTGTGAATTAGAGAGTATTAATAAATATAAGTTTAATGAATATAAAGAAATTGTTAAAAACTTACACAACAAAAAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 20874-21230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIVI010000016.1 Clostridioides difficile strain JV65 033 JV65_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 20874 29 93.1 37 .AG.......................... GCTGTATCCTTTGCCCCTTTTGCTGCGTCACTCAAGG 20940 29 86.2 37 T............A.T............G TCGTTTATCATTGCTAGCCTCGCATTCGTACTGGTCA 21006 29 93.1 37 A...........................G ATTCGCGATACTATTTGTGCAGTATCTAAGTAGGATG 21072 29 100.0 36 ............................. CATTCACTACAAAATATATATTCTAATGTATCATTC 21137 29 89.7 37 ...............TA...........C AATATATATAGCAAATCTGTTATATTAACTATGAAGG 21203 28 82.8 0 ...............T....-.CT....A | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 90.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTTGTGAAATTATTAAAAAGATTGATTTAGAAGATAGTGAAGTTAAGGGAGTTTGGGAGACCAATGGAAGTTGGACTGGTACTGTAAATAAATATACAAAGAGTGTAATAGACAAGGTGAGAACTTGGATAGAGGAGAATAATAGACCTACTAAGATTGCAGGTGAGAAGAAGAATTTCCATGTAGTGTATAAAATTGAGTAAATGTATAAGATTGTATTAAATAATTTAGTTTAGTTTATTTTAGTTTTGAGGGGGATTAATACAATGTATGAGAATTTACTTGATATAGATAGAATAGAACTTATCAAAGAACTTGGAAATATCTTTGAAAAAATGAAAAATGAAAATCCAGATGAATTTTATAGATTTGTAAGTTTAGTGAAAGAAGAGTGTAGGAAAAAAGAAGAGAAAAATAAATAAATAGACAAATAAAGCACTTGAATATTTTACTGTTTCAAGTGCTTTATGTAGTAAAAAATGATATAATATAGGTAG # Right flank : ATTAAAAATAATTAAAAAACACTTACTAATGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGTAAAAATTTTGAAGATATAGTATAATATTCTTATAAAATATAATTTAGGGGGATATTATGAGAGAAGGAAAGAGAAGAAGAGGATGTCTATTTTGGTTTATTCTTATTATTTTATTTTCTGGAGTTGTTGGAGCAATAGCAGGGAACAGTACTAATAATGAAAGCACTGAAAAACAGAAAGAGGATTTAACTAAATATATTGGTGAAGAAGGTAGTATAGGAGATTTAAAATTAACTGTTAATAGCATTTCAAAAGCTAGTGAAATATCAGTAGCATCTGGTTATTTAGCATACACTCCAGATAGTGGCAAATATGGTATTATAAATTTAACAATAAAAAATCAAACTAAGGAAAGCCAATCTTTTATGCTAAATTCATTCACATTAATAGGACCAGATGATTCAAAATATGTTCCATCTTTATTGATTGATG # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 74291-73211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIVI010000018.1 Clostridioides difficile strain JV65 033 JV65_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 74290 29 100.0 36 ............................. TGATAGATAGAGATTTGAAACTAGATGATTTATCAG 74225 29 100.0 36 ............................. TGACAGTAGGCTTAAAACTTGGGTCTGTCTTAGCTT 74160 29 100.0 37 ............................. TTGTTATTTATTAAAATCAATTTACCTTCTTCTACAG 74094 29 100.0 37 ............................. ATTACAAAAATGGCAAGGGAATTAAATTATGATAGAA 74028 29 100.0 37 ............................. CACTATACTTACTTTGAATTATTTTCTCATTTGTATT 73962 29 100.0 35 ............................. AGAAATTAATCTAAGCCTTTTTAATGGGGATACAT 73898 29 100.0 36 ............................. ACTTGTATAGAAGATGTATTAATAGAAAGTTTAAAA 73833 29 100.0 37 ............................. GTTTCTAATAATATTGCAAATAAAGTTTTAGATACTA 73767 29 100.0 37 ............................. ACCTTTTTTGCTGCTCCTTTTATTATTCTTCCTGCTT 73701 29 100.0 36 ............................. ATCATAGTTTATTAACACAGGAAACGAGGTTAGTTC 73636 29 100.0 37 ............................. AACTCTTTTAAAAAAGAATATACGATTTTCAGAGAAG 73570 29 100.0 37 ............................. TATTAATTGCTTATCTATTAATTCTTTTAATTTTTCA 73504 29 100.0 37 ............................. TCTTTATATTGATATCCAAGAATAAGCGCACGTTCTT 73438 29 100.0 38 ............................. TTGCTTAGCGCAATAACTTTTGAAAATACTACAGGAGT 73371 29 100.0 38 ............................. GAAGTCAACAATTTGGCTATTGGTTAAGTACAACTAGC 73304 29 100.0 36 ............................. AAAGAAAATTGGGTTTTTGATTAAGAACTTGCGAAT 73239 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : ACTATTATTATATAACTAACATCTAAGTGACATTTAAGAAAAATATGAGATTACTGATATTTTACTGATATAAAACTGAATGTTATTTAAAGAGAGCCTTGATTATATTTTTAGAAGCTTTTTATGCATATTATCTAAAATATGAGAATATCTATTCATAGTTATTTTTATATCAGTATGACCTAATTTTTTAGAGAGAATTTTTATATTAAATCCAGTTAGAAGAAGACTTATTAGAATATCCAATGTAGTAAGCACTAGCAGATATTCTTAAATTGATAAATTACTCCATTTTAATTTTATAGGTTAAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGCGTTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAAAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : CTGCAACAAGTATAGGTAAAATACTCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAGTAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATAGAATAAAACTTAATGACAAGATACTAGATATAAAAATAATTACCTTATAAATAGATTGAAATTTGTGAATATTCATACTATAATTTAGATATAAGGAGATGCTCTTATAAACTTAAAGGGTTTGTACTACTTGTACTATCAGTATTGATAATATTAAAGTATATATACCATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATGTTAAACAACACAAATATCAAAATTTAATATTGATAGAGGTATAAACATTATAAAAATAATTGAAAATAAAAATTAAGAAATATTTAATCCAACTACAATATAAATTAGAACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //