Array 1 1721-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHQ010000032.1 Akkermansia muciniphila strain CSUN-56 AmIII assembly_contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1720 31 100.0 34 ............................... CCGGCGCATACGAGTGTAACAATTTTTCAACCCA 1655 31 100.0 33 ............................... GTAAGGATAACTGGCAGGAAGCGTCCTGGGTGG 1591 31 100.0 34 ............................... TACCTAGCAACCCGCCCAGCACCACCGCCGTCAT 1526 31 100.0 34 ............................... CCCACTACGGGCATGGAGCTGGTTTTGAGGTACA 1461 31 100.0 33 ............................... CGGCGGCTGCGCCCCTTCTGCGGGCATTTGGGC 1397 31 100.0 33 ............................... TTATAAAATGGATGTTGCAATACTTCACGACCA 1333 31 100.0 34 ............................... GTAAGAGCCACGCTGGCGGCGGTCTGCTTATCCG 1268 31 100.0 34 ............................... TACTTGCGCCCTGTACATCAAAAATTTACGGCCT 1203 31 100.0 34 ............................... CCGGCGCACGGCGTTGAAATAATCCGTCTCGTCG 1138 31 100.0 34 ............................... CGCTTTTTGGGATCATCCGGCAACGTCACAAAAG 1073 31 100.0 33 ............................... CTGTGGCGGATGTGTTTGCCGGTCACGGCGACG 1009 31 100.0 33 ............................... CTGTGGCGGATGTGTTTGCCGGTCACGGCGACG 945 31 100.0 35 ............................... TCGACAACGTGTGGATTGTGATCAGGAACGAAAGA 879 31 100.0 34 ............................... TATGTTGGTGTTCATTTTATGTCTTCTTTCTATT 814 31 100.0 35 ............................... AACAAAATAGGGAGATTGTGACTCCGGACGAATAA 748 31 100.0 34 ............................... CCGGCATACCTTCAGTATGCGGGCAGCATCGGCA 683 31 100.0 34 ............................... TTGTTTGTCCACATTAAACTATTGAGAATATGTA 618 31 100.0 33 ............................... ATATCCGGGGTTCTCCAATTCGATGATGATCAC 554 31 100.0 34 ............................... CAAAACTTTATCGCCGCGCGCCTCCGTGGATTTA 489 31 100.0 35 ............................... GGCACCGTCGGTGGTCTTGTCCACCAGGGCGGCCA 423 31 100.0 34 ............................... ATGCTGCCGGAATGGCAATTGTGGACGAAATGTT 358 31 100.0 34 ............................... ACGGCGATCGCCAAGCCGCACAAGGGAAGAGTCA 293 31 100.0 33 ............................... TCCGCTCGGCCCCATGGTCCAACCGTCAAAAGT 229 31 100.0 34 ............................... GATGGCGGCAATGTGAGACTTGAGCAGGTCATGG 164 31 100.0 34 ............................... CCAAAAATGCAGACTTGGAAAAATACGTTGATGA 99 31 100.0 34 ............................... CCCGCGCTGGGGCGTCATTAAATCCAAGTCCAGA 34 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 27 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : | # Right flank : CCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2216-1991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHQ010000030.1 Akkermansia muciniphila strain CSUN-56 AmIII assembly_contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2215 31 100.0 33 ............................... TGTATGAAGACAATATAGGTTTGATCTCATCCT 2151 31 100.0 35 ............................... AGAGTAGCATCATCTCCTGGTTGAATGCCGCTCCG 2085 31 100.0 34 ............................... CCGGCATTGGTATTTAGTCATTTGTCCGGTGCTT 2020 30 90.3 0 ..........T..........A....-.... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 97.6 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : ATGACGCCAGAATTCTTGTACAGATACCG # Right flank : GGCACCTCCAGCTTCCATGCCTTGTGGCACAGCAGTTGACCCTCATGGGTGAGCAGGATGAATATGAAGTTATATAGCGGATACTAAAATAACGGCGGTTTTTTCATTTCAATAGATGGATTTAAATGGTTCTTTGTTGATTATTGTTTTTAAAGGAGGCTTTCATGTGCCGAAGGCGCCGGGTGAATAGCTTTCAGGTGGTTTCATGATGATGCACGGACAGCCTGTTTTTAGAACAGGAAGAGTTGTCCGGTAAGTTTCCTGCGGCATGGGGCCTTTTTCCGCGTTCACAGTTTGTGATGGATAAGGCGGGAGGAATCCAATATAGAGATAAAATGCACATAGACTGGTTGAATGATTTTCTGGAATGGGCGCCTATTCTTCTGATGGTACTGGTGGCGGTTGTTTTTCTGGCTGCGTTGAAGTGGAGAAGCGGGAGGCTGAAGAAGTCCGTGGAGGAATGGAAGCGGAAGTTGGTCCGGGAGGCGGAGGCAGGCCAT # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 327-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHQ010000012.1 Akkermansia muciniphila strain CSUN-56 AmIII assembly_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 326 31 100.0 35 ............................... GTTCATAATGTGTTTTATGTTAATGGTTTTTGCTT 260 31 100.0 34 ............................... TTTAACTAATTGGTTTTTGGAGACACGGACTCCG 195 31 100.0 34 ............................... AAGTACTTGGACGTAGATTATTTTGGCGGTAAAC 130 31 100.0 34 ............................... CTCAAAAAAGGGGTTGAACAAAATGTTGCGGCAT 65 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 5 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : ACGGCCCTGTAAGACTCGGAATTCCCGGTTATCCATCCATGGAGGGAGCCGTCCGAAAGGGCGGCTCCCTTTTTTAATGATGGCGGAAGTGGAGCGGAGGAAGCTTTCCCCATATGGGAAATGGGGATCGGGGCTTCCGTAAGGAAGAAGTTGATGGGTATGATTGTTGCCGGGGCCATGGTGCTGCTCATCGTATGAAGGGCCGTGGAAGATGTTGCTGGACGCGGCAGGGTAGAACGGCTAGCATGAATAAATCAAATTGGAAGCAAGCGGTACCGGACAAGGAATGTTCCGTCATGGGCCCATATCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTCGCTGTAAGTAATTGGGAAACGAATATTGACAAAAGAACCACCTACTATTGAGCCTGGCAGTATCCGGTCTCCGAATCAGGTTGGCGCAAATCCCGTTTTGCACGCTTGATACTCAACCCGTATGCTTCCAGGCT # Right flank : CTTTCTGGCGGCTTGCTTTATTGTTGGTGGGGGTA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 28657-27087 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHQ010000013.1 Akkermansia muciniphila strain CSUN-56 AmIII assembly_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 28656 33 100.0 34 ................................. AAATTTTCTACCCTGATTTTGAAATGACCTATCC 28589 33 100.0 34 ................................. TCCATGCGAGTCTCTTGCACCAATGTAAGATTGT 28522 33 100.0 33 ................................. CCCTGCCACCACTCGGCCGCGTCATCAGGTCCG 28456 33 100.0 34 ................................. CGCCACGCCGGGGGCGTCAATCGTGAACGTCTTC 28389 33 100.0 34 ................................. ATCAAATTCCCTGTGGTTGAGGTCATCCCGGAGG 28322 33 100.0 34 ................................. TGTTGTTGTTTGAAAAAAGAGCTTTAGCCGGGGA 28255 33 100.0 34 ................................. ATATGATCAATACTGATCTTTTTAAGTACGCCTG 28188 33 100.0 34 ................................. CACGGTCGTACATTGGCTTTGGATTAGTTTCAAA 28121 33 100.0 34 ................................. CAGAGCATGGCCCAACTTTCCACCCCGTTTTGGA 28054 33 100.0 34 ................................. GCCGCCAGCTTGGCCAGCGCCAGGCTCGTGAACG 27987 33 100.0 34 ................................. TCCACGTCCACCATTACGGCGGTCTACCCCGTCA 27920 33 100.0 34 ................................. ACTGTAGGGGCAAATGCCTCTACCTTAATGCACG 27853 33 100.0 33 ................................. CTTTGTGCTGGCGGATGGCACGATGGCGCTGAT 27787 33 100.0 34 ................................. TTTCTAATGAGCGCAATTCCTGCACTTGAATAGC 27720 33 100.0 33 ................................. CCATCCGCAGGATTTACAGCATCCCCGGCACAG 27654 33 100.0 34 ................................. GAGGACCGCTCCCCGCAGGAACGTGGTTATCTCG 27587 33 100.0 34 ................................. TATGCGTTTAGGTGCATCACTTTGCATTTTTAAC 27520 33 100.0 33 ................................. GCAACCCATTCAGACACAAGGTAAAATGCGGCG 27454 33 100.0 34 ................................. CCGATTTTTGGCACGCTAGAAGGGGCCTAGAACG 27387 33 100.0 34 ................................. GCCTGGGCGCCTGCCGCTTCTCCCGCCGTGGGAG 27320 33 100.0 34 ................................. CTTGTAAGCTCCGCAGCCACGGAAAACAACCATG 27253 33 100.0 34 ................................. TTACAGATTGAAAATGTGCGGGAATTTTTCCCGG 27186 33 100.0 34 ................................. CTGTTCTCCCGGATGAGGATCACCGCGCCCATGC 27119 33 84.8 0 .....................ACA.....G..T | ========== ====== ====== ====== ================================= ================================== ================== 24 33 99.4 34 GTCGCATCCCACACGGGATGCGTGGATTGAAAC # Left flank : TTCTTCCCGCAAAATCACGGGTAAAAACCCTGCAATACCGCTCCGGCATCACGGCCTACTACATCCTGACCGTCTACCCGGACTCCATGACTCTGGACACCTACGCCGCCCCCAACAACGGCGTTACCGACGAAGGCCCCAAAAGCAGCGAATTCAAAAAACTGCACTCCTACGGGATTCCGATGAATTGAAAACCGGAATCTACGCGGCACCAACTCCAGACGGGAAAGGAAACTGGATTCCTTCAGCCATTCCGGATAAACTTGAACCTGACGCGGCCAGCAGGCAAATGAGGGCGAATGCTGCCTCCTTCCCCCTGCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGATCTGCATAAAGCCTTGGTTAACGTACATTGACATCATTGGAATAAAAACTACGGACTTGAAAATAACAGCATGGCAAACAGGTTGGCGGAAAACGGCAACTGCACCTCTAACCATCAACTGTTAACTTCCAAGCC # Right flank : GAATCGTCCGTCAATTTTATGGAAGAGATTTCCCGTCACATCCTGCATGAAATGTGCGGATATTCTTAATCCCATAATACATGGCGGCGCCACGGTTGACGTAGTCATCCGGGTTTTGGGACAGGTCCACCCAGAAGATGAAGGAGCACCAGGAGGAGGGGGGCTCCAGGGACGGAACAACGACTTCCAGAACGCCCGCCTTTTTCTGCTCCAGAATCAGGCGGACGCGCTTTTCATGCTGGCGGAACAGGAGCAGATGGTCGTGAAGGGTGGAAAGAACACACAGTCCGGATAGGACGAGAAAAATGGCTGTAAAGATACGGGGCCGCGGCACGGCGCAGGGGATGCCGTACCAGGCGTGAAGGAGAACCAGCACCCCGATGCCGAACAGCAGGGTAGCGGAGAACATGGCATGGTCTGCCGGAACAACGGCAGCGGCAAAAGAGAGAGCCATGGCGTATGCCGTCAAAATGTATGCCGCAGCCGTTCCAACCTGAATT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCACACGGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 159936-157962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHQ010000004.1 Akkermansia muciniphila strain CSUN-56 AmIII assembly_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 159935 33 100.0 34 ................................. TACGCAAGCACCTTATCCAGAGGGAGAGAGGGCA 159868 33 100.0 34 ................................. AACTATTGAGGCTATTTTTTAGCCAGTACGACAT 159801 33 100.0 34 ................................. CGCCCAGTCGGCGCCGTCTTCGGACGATTCGACG 159734 33 100.0 34 ................................. GGATTGCAGGCTTCCGCCGCAGGGCTGGATGCCG 159667 33 100.0 34 ................................. TGACGGTAACGTCAGGCTCAACTATTAAAGAAGA 159600 33 100.0 34 ................................. AAGGGAGGCAGCGGCGTGGCGCACGTGCTGCGCA 159533 33 100.0 34 ................................. ACGGGCCGTAAGCAACAACCCTATCCGCCTTATG 159466 33 100.0 33 ................................. CGGTGGAAACGACCGCCACGGGCGGGGTGACTT 159400 33 100.0 33 ................................. CTGGCGGCCAACTCGTCAAATACGCGGATGAAC 159334 33 100.0 34 ................................. CTGGTTCCGTTGCTTGGTTTCAATCTCTTTGCGG 159267 33 100.0 34 ................................. AGGAAAGCCCCCTCAACTATCACAGCCGGGCAAA 159200 33 100.0 33 ................................. CGCTTCCGGGTCGGTTTCTTTTTCCCTTGCCGG 159134 33 100.0 33 ................................. CGCCTTGGCCAGCGTCCTGAATACTTCCATCTG 159068 33 100.0 34 ................................. TAGCTGTGTCATGCTATTGAGCTGGTTTGGGGCG 159001 33 100.0 34 ................................. CCGCTTCTTGCGGCTCATTATCCGTTTCCGGCGG 158934 33 100.0 34 ................................. TGGAAAGTAAGCCATACAGTGGCGGCCATAAAAA 158867 33 100.0 34 ................................. AAATCAGGGTCCCACGGCATGCCGCAAACACGGC 158800 33 100.0 34 ................................. AGCGTATGGGGCACACTGTTTGCGTGCACATTTA 158733 33 100.0 35 ................................. CACACGTCCAATGCTCCAAGATTCATGAAACTTTG 158665 33 100.0 34 ................................. CCGTGTCTGGTTTAAGGGCAACGCCCTGTATAGC 158598 33 100.0 33 ................................. CAACGCGTTATAACTTTTTTGAAAAAAATCTTG 158532 33 100.0 34 ................................. CCCCTGCCTGCCCTAGAGATTCTATACAAATACC 158465 33 100.0 34 ................................. CCGCAACCGCCTTCAGCCGTTTCTGAAGGCGAAT 158398 33 100.0 34 ................................. CCGGTGGCAATATCCAGGCAGCCCAGCTGCAAGG 158331 33 100.0 34 ................................. CGCCGTGGAAACGGCACCTGTGGATATTGTGTGC 158264 33 100.0 36 ................................. CATCTTGGTATTGTCCTATATCGAGGGGAGACATAG 158195 33 100.0 34 ................................. GTTGCGGAAAATTCGGAAGGTAATAAATCCTTTT 158128 33 100.0 34 ................................. CGTAATGGCTTCAAGCTTGTACTTATTGCTTTGC 158061 33 100.0 34 ................................. TTTGTTGGTATTCAACCAGTTCTTCATGGTCATC 157994 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 30 33 100.0 34 GTCGCACTCCACACGGAGTGCGTGGATTGAAAC # Left flank : TAAGTAACCATGTACATTCTCATTACTTATGATGTCTCCACGGAGGATAAGGCAGGGCAGCGCCGCTTGCGCCAGGTTGCCCGCGCCTGTGAAAATATCGGACAGAGGGTGCAGAATTCCGTATTTGAATGTGAACTGTCTCCGGCCCAATTGGTTGACATCAGGAGCAAGCTGCTTAAAATTATTGATCACGAAAGCGACAGCCTGAGGATTTATCACATGGGTTCCAATTGGCATCATAAGATAGAACAATTGGGAAAGGAAAAAAGCTATGACATTTCCGGCCCCCTGATTATTTAAAGACTGTTGAACACGGCCTTTGCGCCAACCCCAAGCTCACACAAATTCCCCGGGAGGTCGGCGATAGATGTAATGCATTGGGAATTGAAGATTGACAGATGATCACCCCGAGAGGAGGCCGTGCAATGACGGTCTTCTCCGGGAGGTTGGCGCAAAGTATCGTTTGCACTGTTGAATAACAGTGCATATGATCATACGCG # Right flank : CGCGGCGGCCTGCATCCAGAGTTCCCAGTCCGCGTCGCACTCCACACGGAGTGCGACTCTGCTGTCTGACAATGAAAAAGCTCTCCAGGCCTGTTTGGTCTGGAGAGCTTTTTTGTAGTGACGTATCATTAAAACTTCAGGAAGGAGTATGATTGTCCAGGTTGAGTTCTGCGGGCGGGATAGCCTGGAGCAGGGCCAGAATGGGGTCCTGCGTTCCGGCTCCCGTTTCCTGCCGGCGTTTGAATTCCTCTTCTTCCTGCTGGAGGGTGGCCAGCTTGGTGTCTTCCACCAGGGCCTTGAATTTGTCTGCCTGGGAGTATTCGCCGTCTTTATCCCGGAAGACCCGGGCGAGCCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGAGTCTTTCATGTGCCGGGGAGGGTATTTTTGTCCAGCAGGTTTCCGGCCAGCTGCTTGCCTTCCTCCGTGGGGCGGTACACGTAAGGGCGGCAGTCTCCGAACCGGTTGACGTATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCACACGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 170959-169110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHQ010000004.1 Akkermansia muciniphila strain CSUN-56 AmIII assembly_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 170958 31 100.0 34 ............................... TACGCAAGCACCTTATCCAGAGGGAGAGAGGGCA 170893 31 100.0 34 ............................... TATTTTTAGGATGCCCCATAAGGGGCTATAGGAT 170828 31 100.0 34 ............................... ATATGAGTTAATTCTAATTTTTAGATTTAGGGGG 170763 31 100.0 34 ............................... TTTAACTAATTGGTTTTTGGAGACACGGACTCCG 170698 31 100.0 34 ............................... TTCCACATTCGGGAAAGCGTCCGGCCATGGTGAA 170633 31 100.0 34 ............................... CATGCAGCGGCGCAGGGTAATGGCCAGGTCTTCC 170568 31 100.0 33 ............................... CGGCCTTGCGGGCGGTCGTGGCGCCGGAACGCA 170504 31 100.0 34 ............................... CATCCTTCAAAATCCCATTTAATTTCAACGTGTT 170439 31 100.0 35 ............................... TGGATCAACCTTGCCGCCCTTCTGTCCCTGCTCCT 170373 31 100.0 34 ............................... GGAACGTCTCTTGATGGGCGTTGCCCGCCAGCGT 170308 31 100.0 33 ............................... CATTTTCAGCCTGGCTTCATCCTGGCGCACCTT 170244 31 100.0 34 ............................... TCAAGATCGTCAATGCAGGTCTTAATGTCATCCG 170179 31 100.0 34 ............................... CGGAAACGTCCGCTGCTGGGTGTACGGCGAGCTG 170114 31 100.0 33 ............................... GGTCACTGCGTAAGACGTGGTGAATTTCATCGA 170050 31 100.0 35 ............................... GTCCCGAAAGGTATCATCCTGGCAAGCCTAGTCTA 169984 31 100.0 35 ............................... TGGCTCCTGATCGTCATCCGCGTCAGGCAAGGATG 169918 31 100.0 35 ............................... CCGTTACACGATGGGCAAGAAAGAATTCATCCAAA 169852 31 100.0 34 ............................... AATGCAATCAAGGCAGAATACGTCTTGCGCCTGT 169787 31 100.0 34 ............................... CCCCCTGGTGGAGCAATACGGAGGGACCATCCGG 169722 31 100.0 34 ............................... CTTTTGCCGCCCTTTACAGCCGGGCAAACTGGAG 169657 31 100.0 34 ............................... CTTTCTTCAAGAAAAAAAGAACACTTTGTGAACC 169592 31 100.0 33 ............................... CAATGCGTTGGGTTTACAGTTGAAATAGGCGTC 169528 31 100.0 34 ............................... AATCCATGTATTGTGTTTGGAATAATCTTCATCA 169463 31 100.0 34 ............................... GCTTTTTCAATCGCCTCGGCCTGGTCGGGCGTGA 169398 31 100.0 34 ............................... CCGTCGTGAAATTCCCTTGCCACCGTCGCCCTGG 169333 31 100.0 34 ............................... GCCAGTGCGGGCATCCCTTTAATTTTTTGCGGGC 169268 31 100.0 34 ............................... ATCAGCCATTTGGCCTGTTCCGCCATGACGGCGT 169203 31 100.0 33 ............................... CAATAGTGCGCCCAATCTTCCACCCCGTTTTGG 169139 30 93.5 0 .............G............-.... | ========== ====== ====== ====== =============================== =================================== ================== 29 31 99.8 34 GTCGCACCCTCACAGGTGCGTGGATTGAAAC # Left flank : CGGAGAAAACGATGCCTCCCTCAAGGACACGGTGACCATCCGCCACCGCGACTCCATGGAGCAGGAACGCGTTGCCATCAAGGACCTGCTTCACTGGCTCATTGCCCGCGTGCGTTAATGGCGCCTTTGACGGCCGCTGATGCCGCAAAACACTTCAGGGCCGCTCCGTGTTGAATGGAGCGGCCTTTTGTTTTCGGAATGACTGTGATGGAAAAAAGTTGCTGGACGATAGGCCACGGACCATCTAGCATCAAAAACAGGTTGGTTAACCAGAGGTGAATCAGCGATTCCAACATGAATTGCTGAACCGATGATCTGCTTGCGCCAACCTCAAGCTCACAGGAATTTCCCGGTAGATCGGCGATTCCTGTAAGTCATTGAAACCAGTAGATTGACATTCCCTTCAATAAGATAGAAGGCGTAAGGATTATGTATCTTGAAAGAGGTTGGCGCAAAGAGCCGTTTGTACCACTAACTTTCAACGCATATTCCTTTCCGCC # Right flank : ACGATATGCGTCAAGGGGTATACGTTTTAGATGGTTGTCACACCTGTATGGAGATATAGGTGCGACCATCAAATACCAGCCCTCTTAAATGGCATAGCATTAAATAGGGGGTGCCAAGGTGAGAATGGTTTGGGGGCGACTTTCTTGAAGTAATAAAGAAAAATAATAGTCGGGCTTAAATATTTAAAAAGGTAATCTGTGACACAAATGAAACTTCTAGAACCAGGAAGAATTCGTTATAGGAACATGGCAACGGTATGTTAAGTTTCCGTTGTATTTTGCATCAAGAGGGATAGATGAGATGATTAGAAAGTGCTTGAAGTCGGAACAGGAAACGATTTATGAAATTATCAATGATTCAGCCGTGGCTTATAAAGACAGGATTCCTGCCGACAGATGGAAGGAACCTTACATGCCCATGGATGAATTAAAGGAACAGATCAGAGATGGTGTGGAGTTTTACTGTTATGAAGATAAGGGGCTCCTTCTTGGTGTCATGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 21750-22754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHQ010000005.1 Akkermansia muciniphila strain CSUN-56 AmIII assembly_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 21750 31 100.0 33 ............................... GCCCGCCTATCGACAACGGCAATTGGGGTCTTA 21814 31 100.0 34 ............................... TTTCAACTGGCGGAGTTTATTTTCTAATGTATTG 21879 31 100.0 33 ............................... GGAATAAAGGGCCCTGAGCTTATCCGTTTCGAG 21943 31 100.0 33 ............................... AAGTCCATGCTGATGGATTTTGCCCGGAATCCG 22007 31 100.0 33 ............................... ATCTCTATGGGAGAACTGCCCCTTTCGTAAGCT 22071 31 100.0 34 ............................... GGCCCCAGGCCAACTGACGGGCGCGGCTCTTGGC 22136 31 100.0 34 ............................... CCGCGCGGAGATTGAAACCGAACTGAAGGAACTG 22201 31 100.0 34 ............................... GGAATTCAACGACCAGGAAGGGGAAATCGGCACT 22266 31 96.8 34 ...........A................... CAGATGGCAGCGGTACAAGGCGGATTCAACAAGG 22331 31 96.8 34 ...........A................... TGTGCATCAGCGTATTCCTCCGGAGTCAGCACGG 22396 31 96.8 34 ...........A................... CAGCGGCGCGCCCAGCTTTCCACGCCGTTTTGGA 22461 31 96.8 36 ...........A................... CCACGAGCTTACGGGAGGCCAGGTCAACGGCAAGAA 22528 31 96.8 35 ...........A................... CCGGTAAATAGAATTCAAGGCTTTGAATTCCAAGC 22594 31 96.8 34 ...........A................... CCTGCGCCGACTACCCCCGTCGTGCGCATCGTCA 22659 31 96.8 34 ...........A................... CCATAAGTGGAATACGCCTTTCGGGCTTTACAAC 22724 31 93.5 0 ...........A..............T.... | ========== ====== ====== ====== =============================== ==================================== ================== 16 31 98.2 34 GTCGCACCCTCGCGGGTGCGTGGATTGAAAC # Left flank : AATTCCCCTGCTGGCCTGCATGGCCTCCGTCATCTCCGTGGTGCTGGTATGGCTGTTGAGCCTGAACAAGTGGACGCGCAAGAGCATCATGTAAAGCCCGGATATTTTTCCAAAAGGCGCTTCAGGACGGCAGCAATGCTCCTGAAGCGCTTTTTTTGTCTGGCGGGGCGGGGAATAACGATATTCCCGGGAAAAGGGCTGTGCAAAGTTCTGGACGGAGGAAAGGGCGCGGGTTAGGATGTTCCTGCATCGTGCACAGGCCCAGGTTGCCGGAGGCGGCTGCTTTTTACAGGAGAAAAAGCATAGCGTCCGGTCTCCCTTGCGCCAACCCCAAGCTCACAGGAAATTCCCGGGACATCGGCGATTCCTGCAAGACGTTGGGAATCCTATCTTGACAACAATAATCTCTTCTTTACGGCCTGGAAACCATGCGGCGGCATGGGAGGTCGGCGCAAAACGCCCACGGCGTTATTGATGCTCAACCTGTAAGCCCTTAGGCC # Right flank : CACGCTGGAGGGAGACGGAACCGTGCGAAAAGCGAGGCCCTTATCAGCCAAAATGCATGCCCGGCGGCAGGTATGACAGCACGGCGGCGCGGAACTTTTTGCGGCGGCATGTTCCGCTTGGTTCTGTTTTGATATAAGTTTATTTTATTATAAGCAAGTTGTGTAAAATTCCCGTGTACGTTATTTCACGCTGAAGCGGGGGCGCTGGGTAAGCCGGGGCCCGGATGAATGAGGGAAACGTCCTCATTCTTGATCTTTTTTCTCTGAATGTTGTCAAAGGTTTATACAGTATGAACGTGCACGATCAGGTAGAAAGAATACCGGCAATGGAACATTCAGTGATTTTTCCGGACCATCGGAAGGTTTGCGCCCTGGGGCAGGGAACCTGGAAGATGGGAAAGTCGGCGTTAAGGGAGGCCGAAGAGATCAAGGCGCTGCGCGCCGGCATTGAGCTGGGCATGAGCGTGGTTGACACGGCTGAAATGTACGGAAACGAGGAC # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCGCGGGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //