Array 1 5562-6932 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGVM01000018.1 Salmonella enterica subsp. enterica serovar Heidelberg strain T_NS-021B NODE_18_length_86751_cov_38.9574, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5562 29 100.0 32 ............................. AAATACTGGCCGTCATAACAGACTGAACTAAA 5623 29 100.0 32 ............................. CACATGGACATGATCCGACAGTTTCAGACCAT 5684 29 100.0 32 ............................. GCTTGCCTTTAAACCGCGTCACCAACGTAACC 5745 29 100.0 32 ............................. CCAACAACGGAATGGCCACCATTGAGCAGGAG 5806 29 100.0 32 ............................. GAACGCAACGATATAGAGTTAGTTGTCGTTGG 5867 29 100.0 32 ............................. TCCATCAATCACACGCTGGCGATCTTTCACTA 5928 29 100.0 32 ............................. TCATGCAGGGCGTGAGCATCAGGGCGACGAAC 5989 29 100.0 32 ............................. GGACGCTGGCATATACCAGCACCATGACATAG 6050 29 100.0 32 ............................. CGCAGATGCCCGGCGGCGGCCGTACTCCTGTA 6111 29 96.6 32 ..........T.................. AATGAGGTAGTCTTCACGCGTCATTGACTGGG 6172 29 100.0 32 ............................. GCCGCCCGAGAAAAAGCGGATCTGGATTACGC 6233 29 100.0 32 ............................. TCTGATATCGCTTCTTATGGACAAACGCGCGG 6294 29 100.0 32 ............................. CGCTGGTAGAGGCGCTGGAGAGGGCGCAGCAG 6355 29 96.6 32 .................A........... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 6416 29 100.0 32 ............................. CGGCTAAAAGTCGCGCTGGCAAGATGTCAGCG 6477 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 6538 29 100.0 32 ............................. AGCCGTTCCCGTTGAATACGCCGGCGGTTATC 6599 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 6660 29 100.0 32 ............................. GTCAAGGTGTGTAATTGAGGCATCAAGTTCAG 6721 29 100.0 33 ............................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAGG 6783 29 89.7 32 TGT.......................... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6844 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 6905 28 86.2 0 ...............A.AA....-..... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAAGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23693-24759 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGVM01000018.1 Salmonella enterica subsp. enterica serovar Heidelberg strain T_NS-021B NODE_18_length_86751_cov_38.9574, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23693 29 100.0 32 ............................. GCCGATGACGGACTGGAGGGTGTAGAAGCTGA 23754 29 100.0 32 ............................. ATAAATAATCCGCGTTTCCTCGTCAGGTTCTT 23815 29 100.0 32 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAA 23876 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 23937 29 100.0 32 ............................. GCCGGGGTTTCCCAGAGGCATTCTGATGAAAG 23998 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGA 24059 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 24120 29 100.0 32 ............................. AAAACCCAGGAACGGCACCAAAATTTACACAT 24181 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 24242 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 24303 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 24364 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 24425 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 24486 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 24547 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 24608 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 24669 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 24730 29 96.6 0 ............T................ | A [24757] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGAAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //