Array 1 114448-113564 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MXOU01000001.1 Salmonella enterica subsp. diarizonae serovar 61:k:1,5,7 strain BCW_1536 NODE_1_length_544970_cov_5.78256, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    114447	    29	 100.0	    32	.............................	CATACTTGCCTCACTTCATCCAGGATGAGAAC 	
    114386	    29	  96.6	    32	............................T	TTCGAGTACGATTTTCATGGCTGCGCGATCGG 	
    114325	    29	 100.0	    32	.............................	CCGGATCCCCTATTCCGCGATGAGTACGCAAA 	
    114264	    29	 100.0	    33	.............................	CCTCCTGTCTGTCCGGTCGCTCCAAGTGCTTTA	
    114202	    29	 100.0	    32	.............................	CAAACGCGCTCGCTACCATTCCTAAAGATTCT 	
    114141	    29	 100.0	    32	.............................	GGTTGATTCAACGCATGTGAATATTTACGTTC 	
    114080	    29	 100.0	    32	.............................	CTCATTCGTTTACGCCCCTTGCGGGGGCGTCT 	
    114019	    29	  96.6	    32	.....T.......................	CGCCTTGAAATAGATTTACCGCGTTGTCGGCG 	
    113958	    29	 100.0	    32	.............................	TGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 	
    113897	    29	 100.0	    32	.............................	TTTGGGAATTTATTCAGCCAGACGACAGCCGA 	
    113836	    29	  96.6	    33	..............G..............	ATTCAAACGTTGAATTTTCCGTAGATTCACTGC	
    113774	    29	  89.7	    32	A...........T...............T	ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 	
    113713	    29	  89.7	    32	A...........T........G.......	TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 	
    113652	    29	  96.6	    32	..............T..............	GCAACAGTGCTGGTGGAATTAAAAACACCGAC 	
    113591	    28	  89.7	     0	............T...........G-...	|                                	
==========	======	======	======	=============================	=================================	==================
        15	    29	  97.0	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT
# Right flank :  TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC

# Questionable array : NO	 Score: 6.03
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [11-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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