Array 1 256-3748 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJH01000021.1 Moraxella catarrhalis strain 80/196/2 NODE_21_length_30788_cov_19.536969, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 256 28 100.0 32 ............................ TGACAGCCAACACTCAATCAATCATGAGCCTT 316 28 100.0 32 ............................ CAGCGTCAATCGCTGGGCTTAACTGTTGCAGA 376 28 100.0 32 ............................ CAAAAGCTCGGTAGCTAAATTCCCCTGCTGCT 436 28 100.0 32 ............................ ACTGCATCATAAAAACGATAAGAGAACTTGTC 496 28 100.0 32 ............................ TCAAAACTTTGGTTGATTGTGGCATTTCAAAA 556 28 100.0 32 ............................ ATATCGCTAAAATCTGTGCCAAGCGTATCATA 616 28 100.0 32 ............................ TATGAAAGCTTTGTTTGTATCTCTTATGCTTT 676 28 100.0 32 ............................ ATAGCCTGCCAAAGTCGTTGGCTTATCAGTAA 736 28 100.0 32 ............................ GTGGCAACCGCACATGCCATCCAACACTTGCT 796 28 100.0 32 ............................ ATCAAAGGCAATGCCGTTAATCCGTCTTGGTG 856 28 100.0 32 ............................ ATTTGCTAAAACTGGTTTTCTCATCCATTCTT 916 28 100.0 15 ............................ ATCGGTTTGCACATC Deletion [959] 959 28 100.0 32 ............................ ATAAGGCCAATACCTGCACCGATGAGTGCCGC 1019 28 100.0 32 ............................ ACGCTGTAAAGCGTTTAATGTTTTGAGCGTCA 1079 28 100.0 32 ............................ TAACAAATCATCAAGACCACCACCGTCTCCGC 1139 28 100.0 32 ............................ AAGAACTAAACGCCCAAGCATTTGACGAAAAA 1199 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATACCCTT 1259 28 100.0 33 ............................ CCGCTCCCCAACCCCACCGAGTGAACAGGTATG 1320 28 96.4 32 .................C.......... TATTAGATAGCTGTACAATACCTGCATTATTT 1380 28 100.0 32 ............................ ATGCTGTTATCGCGCTCATCTTTGGGCAAAGA 1440 28 100.0 32 ............................ ACTATTTATAATAAGATTTCTGCCCCCAGCGG 1500 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 1560 28 100.0 31 ............................ TTTCATGCAAAATGTACCCCCTTTGTGCAAA 1619 28 100.0 32 ............................ ATGCTGTTATCGCGCTCATCTTTGGGCAAAGA 1679 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 1739 28 100.0 32 ............................ ACTATTTATAATAAGATTTCTGCCCCCAGCGG 1799 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 1859 28 100.0 31 ............................ TTTCATGCAAAATGTACCCCCTTTGTGCAAA 1918 28 100.0 32 ............................ GCTTTTCAATTTTGATTTAAAATGGCTTTTCC 1978 28 100.0 32 ............................ ACTTGCCCAGTCTGTCCAATCGCTTGTATTGC 2038 28 100.0 33 ............................ AATCGCACAAATCAAAGCATTGATAATAAGTAG 2099 28 100.0 32 ............................ TCATTGTACCGCATATTGTGCGTAAGCTTAAA 2159 28 100.0 32 ............................ CTCGCGATGTCGAGACATTTTTACTCCCCATT 2219 28 100.0 32 ............................ ATGCGAGCATGCCAACGGCGACAAGCCACGCT 2279 28 100.0 32 ............................ AATCACGGTCTAGCAGATGGCGATGATGTGGT 2339 28 100.0 32 ............................ AGCGGACAAGTTGTCAAATCTTGCCCCGAGCC 2399 28 100.0 32 ............................ ATCAGATGATGGCAGGTGGTTTTTTGATTATT 2459 28 100.0 32 ............................ TGCTTGTTCACGCCCTGCCTGTGGACTAAAGT 2519 28 100.0 33 ............................ ATTCTGCGGCTTTAACAACAGATTCTGGAACAT 2580 28 100.0 32 ............................ ATGACAACAAAAAGTGAAAGAGTTAAGCTTAC 2640 28 100.0 32 ............................ TGATAAATCTACACCACGATTTTGTAATTCAT 2700 28 100.0 32 ............................ CAGCTGGCAGGCAAAGCAAGCACAGCGTCAGT 2760 28 100.0 32 ............................ TTTTAGCGTGGGCGTCCAATCAACTGCGTCAA 2820 28 96.4 32 ....................A....... TTTGCCATAAATCTCACGCACGGACTGCCGTC 2880 28 100.0 92 ............................ CGCCACTTGGGCAGTGGGTGGCTGAATCATGGTAATTATTTGGCGTATGGTTTGTAGAAACGCCACTTGGGCAGTGGGTGGCTTGGCTTGTT 3000 28 100.0 32 ............................ GAAAGCTCTGTGAGTGGTAACACATCTAGTAT 3060 28 100.0 33 ............................ TAGGTGTAAAATATTACACTTTTTACATTCCGT 3121 28 100.0 32 ............................ ATTAACGATTGCCGTTGTACTTAACCGTTCTT 3181 28 100.0 32 ............................ CACACTGATGCCACATGCCGTCAAAGGCGATA 3241 28 100.0 32 ............................ GTTAATGCGTCTTGGTGTTGTCAGTTTTTGAG 3301 28 100.0 32 ............................ GTGTTTTATCAAATCAGCACCGATAAGCTGTA 3361 28 100.0 32 ............................ AAGATATACCGGTAGGGGCAGGCAGGGTAATA 3421 28 96.4 32 .C.......................... ATACGCTCAAACCGACCGATTTGAAAGCAATT 3481 28 100.0 32 ............................ AGACTTTCTTGATTTGGAAAAGCCATTTTAAA 3541 28 100.0 32 ............................ GATAACATTGTCATCGCTCATGTTGAAAATGA 3601 28 96.4 32 ...........T................ CACCCAAAGACATTTCAATTCAGTTACTTAGA 3661 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 3721 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================ ================== 58 28 99.8 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : ATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACTC # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //