Array 1 900909-895951 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033193.2 Xanthomonas oryzae pv. oryzae strain JW11089 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 900908 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGG 900843 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 900776 31 100.0 35 ............................... AAATGATTGAGCATCAAACATCTATGTTTGATAGG 900710 31 100.0 37 ............................... GCCGTCACCTTTGGTGTAGCTATGCGGTGAAACGACG 900642 31 100.0 35 ............................... ATGATCGAACGGCCTACCGGCGCGCCCTCGCCTAC 900576 31 100.0 34 ............................... CTCAGGGCTATCGCCTGTCAGGTGCAATCAAAAC 900511 31 100.0 35 ............................... TCAGACACGGACACAGAGTCATTGAACGTCATGTA 900445 31 100.0 34 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAGC 900380 31 100.0 35 ............................... GGGGTTCCTCGGCAAGGTCGGCAGCTGGATCGGCG 900314 31 100.0 34 ............................... CACACGAGCGCGTCGAAGGCGGCGTTGTGCGCGA 900249 31 100.0 34 ............................... GAGGACCGGCGTGCAGCATCGGTCAACATTGGCG 900184 31 100.0 35 ............................... TCGATCCGGCCGTCGGCGACATCGGCTTGGCGACC 900118 31 100.0 34 ............................... TTTGCAAATGAATCATATTGATCATCAGTCAGGA 900053 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 899988 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 899923 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 899857 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 899791 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 899724 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 899660 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 899594 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 899529 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 899463 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 899398 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 899331 31 100.0 36 ............................... TCCGGGTTCAAGAGTTTGTCTACAAGTACCGGAAGG 899264 31 100.0 34 ............................... CGTATCAGCCTGGTGATTACGAGCTTGATATTGA 899199 31 100.0 34 ............................... AGTAGCCAGTGAAGTCTCCCAGATGATCCCACAA 899134 31 100.0 34 ............................... CGATGATGTTGTACAAGAATGGAATATCCTTAGC 899069 31 100.0 33 ............................... ATACCACATGAGTCTGTATTAGATGCAATGGAG 899005 31 100.0 34 ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 898940 31 100.0 35 ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 898874 31 100.0 36 ............................... AATGACAGCGCATCTGTGGCGGAGAATGCCCCTATG 898807 31 100.0 37 ............................... AAGCTTGATCTTATTGGCATACACCCACCGCGGGAAC 898739 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 898674 31 100.0 35 ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 898608 31 100.0 34 ............................... AGAACATGAGTGTCCAAACGCCTGACGCGCAGAC 898543 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 898478 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 898413 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 898348 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 898281 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 898215 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 898148 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 898082 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 898015 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 897947 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 897882 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 897817 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 897752 31 100.0 34 ............................... GCGCAAAACGATAGCGCCAAGGTCGAAATCCCGG 897687 31 100.0 35 ............................... GCTGCTCGCCGAAAGCAAGCGTCGCTAATAGGAAC 897621 31 100.0 34 ............................... GTTCGTACGCGCCACGGCGTTCGGAACAAACTCT 897556 31 100.0 35 ............................... TTCGGCTAATGGTGGTGAGGGCAGGGCGGCGCTTC 897490 31 100.0 35 ............................... GAGGCGCAATTCGACAATGGGCGTATGCAGGACTG 897424 31 100.0 35 ............................... GACAACTCCACCACGATCACTGGACAAGCCGGCCG 897358 31 100.0 34 ............................... GCGCTTGCCCAAGCCTGACATTTCGCACAACTCC 897293 31 100.0 34 ............................... CACGCGCTATAGCGGCCGTAGTTGCTACGTCCGG 897228 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 897162 31 100.0 34 ............................... CTGGCGCAGCACGCACGGTGGACAAGAGGTGGGC 897097 31 100.0 36 ............................... TCTTGCCCGTAGTGGCGGTCTGGAAGGTGCTCTAAG 897030 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 896964 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 896897 31 100.0 33 ............................... GCCATCGATGCAGCAGGCCAGGACGTAGCGCCG 896833 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 896767 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 896702 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 896637 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 896571 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 896505 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 896441 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 896374 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 896309 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 896243 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 896178 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 896111 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 896046 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCAGCGCAGGCTGGCC 895981 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 76 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //