Array 1 575836-575126 **** Predicted by CRISPRDetect 2.4 *** >NC_014165.1 Thermobispora bispora DSM 43833, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================== ================== 575835 31 100.0 33 ............................... ATGGCTACTGGGAGCACGGGCAGGACGGTCAGC 575771 31 100.0 38 ............................... GGTGCGAGGCAGGGTCGCCCAGGTCCCAGCAGGTGCGG 575702 31 100.0 38 ............................... ATCTCATGGTACGCGATGGATCCGGAAAAATTTGTCAT 575633 31 100.0 35 ............................... GACTTGGAGGCGTTGATATATGCGATGATCCGCAG 575567 31 100.0 46 ............................... ACGCGCACCTCGATTCGGGTGTGCCGCTGCCCGTCCTCGGACTCCA 575490 31 96.8 37 ..........................A.... ATGATCCGGCCCGCCGCGGCCGCGCTCTTGCCCTTCT 575422 31 93.5 41 ......C...T.................... GAATGGAGCGGTTTCGTCAAGCTGCGCCAACGCGAGTACAA 575350 31 90.3 23 ..........T...G..G............. TACCTGGTGAGTGCGAGCGCCCA Deletion [575297] 575296 31 67.7 40 TG.G.GG.GC.....TGT............. CAGTTGCACCTGCCGACGTACCAGACGTTGCCGGACCCGG TG [575283] 575223 31 96.8 34 ..............G................ ACAGGTACCCGTTCACGATCCGGGCTGCCTTGTC CA [575210] 575156 31 93.5 0 ..........T.......T............ | ========== ====== ====== ====== =============================== ============================================== ================== 11 31 94.4 37 GTCCGCTCATCACCCCTAGAGGGATCGCAAC # Left flank : TTCGTGACCACGAGCCGGTCGCGGGCCGCTCGGTCAGCGGATCTGCTCCTGCCCCCAGAGCAGGAGCATGACGACGATGAAGACCACCATCACGCCCGCGTAGCGCAACGGCGTCAGCTTGAAGAACCTGCGCACCCGGTTGAGCGCCCAGGCGAACAGAAACGCTAAGAAAACCAGGAGGATGAGTCCGGAGTCCACTTGATCCAGTATGGGGCCCGCCCTGCCGCCCGGTCACGGCCATTGCCGGATCACAGCGGCCAGGTGGCGGCACCGGCCGCGCCGGCCGGGTGACCTGGCCGGCCACGGGGACCGCCGACCCCTGGGGGGAGCTCGCACCCGTGACCTGCCGCCGAGGGAAGATCGACAACGCTAGCTTGTGAGCCGTGGCGACCGGACAATTGACCCTTCTGACCTGCACTTCTGCACAACCGCCGGTCTGCTGCAAATCCGGGCCCAGCGGACCCGCCCACACCGGTCGCGACCTGCGACTTTACCTTGGG # Right flank : ATCAGCACCTGGTCGTACCGGTCGGCCACGCTGGCGAGTCCTCTCATTACGCTACAGGAATGCAATTCCAAAAAGCAGGGCACCAAAAATAAAACACGAAATGCCTCAAAGTAGACTTAATAAGCCAAATACCACCGCAGATGGTCACCCGAAGCCGCAGAATCAGCTAAGCGGGTGAAAGCGCCCGGTCAGTGGCCGCTGATGTTGATTTCGAACCAGACGGCCTTGCCGTCCCGGGTGGGGCGGGAACCCCAGCGGGCGGCGAGCTGGTCGACGAGGTAGAGCCCGCGGCCGCCCTCGTCGTTCTCCCCGGCGCTGCGGATCCGCGGCAGGCGCAGGTCCTGGTCGAACACCTCGACCCAGATGGACTTCTTGCCCCGGCGGAGCCGGAGGGTGAACTCCTTGTCGCCGACGACCTCGTCGTCCGCGCCCGGGAAGTCCCAGGTGTCCCAGGACTCGTCGAACGGCAGCGGCGGACCGTCGAGCACCAGGGCCCGGCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCATCACCCCTAGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1735407-1730562 **** Predicted by CRISPRDetect 2.4 *** >NC_014165.1 Thermobispora bispora DSM 43833, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1735406 29 100.0 32 ............................. GTCGATTGCTACGACGTTGTCCGGCATCCGGC 1735345 29 100.0 32 ............................. ATCGACAGGTCGGTGAACTCCAGCGGTTCCCG 1735284 29 100.0 35 ............................. AACCTGATGAAGGCCGCGAGGCAGGCGGCCAAGCT 1735220 29 100.0 33 ............................. CTTCAGCTGGCGGGGCAGACGCGCCACCGTCAT 1735158 29 100.0 32 ............................. AGTGTCGGTACGTGTTCGCTGCGGCAGTGCGG 1735097 29 100.0 32 ............................. GATGGCTCACGATGGCAAGTCAGCCCCGGGAG 1735036 29 100.0 32 ............................. TCGAACTCGGGGTCGTCCTTGCGGACGATCGT 1734975 29 100.0 32 ............................. GGGGAGCGCCTCATGGGCTCCCCCGATACGAC 1734914 29 100.0 33 ............................. AACGAGGCCCGCCGCCTCCTCGGTGCCGTCGAC 1734852 29 100.0 32 ............................. CTTCTCGCCGTCTTTGCCCAGCTCAGAGCGGG 1734791 29 100.0 32 ............................. CCCACGGGCACCCAGCCGGGCGACCTGTTCCT 1734730 29 100.0 32 ............................. CCGGTACACGGCCTCCTGCTTCTTGGAGCGCG 1734669 29 100.0 32 ............................. GCCGGCGCGGGTTTGCTGCCGTGAGCCCGGGC 1734608 29 100.0 32 ............................. CTCCAGGACAAGTGGGAGGAGTGGCAGCGGTC 1734547 29 100.0 32 ............................. AGGGAGGAGGGATATGACGGTTCAGCAGCTGG 1734486 29 100.0 32 ............................. CGCCCTTGGATGTCCACCTCCCCGGTGGACGT 1734425 29 100.0 32 ............................. GGGAGCTGCTGGCCCTGGTCGAGGGAATCGAA 1734364 29 100.0 32 ............................. TCGGCGCGGCTGTGCGGAGTGAGGGCGCAAAG 1734303 29 100.0 32 ............................. GTCTCGGCGTCGACCCGGCCGGCTGCCGGGGG 1734242 29 100.0 32 ............................. CCGGTGGCTGCCTACCAGGATTGGGTGAAGTG 1734181 29 100.0 32 ............................. GACCGCTCATGAGCGCTCGAGCGCTCGCCGGT 1734120 29 100.0 32 ............................. CGGCATGTCCGTCCGCACCATCCACCGCACGA 1734059 29 100.0 32 ............................. CGCTCGAACTCGGCATCGTCCATCTCCCAGTC 1733998 29 100.0 32 ............................. GGGGCCATCGCCATGACCCGCGCCCAGCACCT 1733937 29 100.0 32 ............................. GGCAGGCCGAGCTTCGCCGGGTCCGGGCCGAG 1733876 29 100.0 32 ............................. CTCGACGGTTCCCCCGCTCTTGCCGGTCTCCA 1733815 29 96.6 33 ............................A CCCACGCCAGAGCGTTCAGTCCGGAGCTGAACT 1733753 29 96.6 33 ............................A CCCACGCCAGAGCGTTCAGTCCGGAGCTGAACT 1733691 29 100.0 32 ............................. CACGAGCTCGCCGAGCAGATCCGCCAGGAGCG 1733630 29 100.0 32 ............................. GCCGCCTTGCGGCACGCCACGTTGCAGGTGGT 1733569 29 100.0 32 ............................. CGGAATGATCGTCACCACCAGCTACGGCACCT 1733508 29 100.0 32 ............................. GGTGGTGATCTGCCACCGGCTACGGGCGTATC 1733447 29 100.0 32 ............................. GTCAAACCCAGGCTGCGGCTCACCCCCTACCT 1733386 29 100.0 32 ............................. TTCCGGCTGGCGAGCGCTCGTCGTCGAGGGAG 1733325 29 100.0 32 ............................. GTTACGCACCCGACGTTCCCGGCAGGCGCGCA 1733264 29 100.0 32 ............................. GGCGCCTTGACGTACCAGAACGAGGCCGGGTG 1733203 29 100.0 32 ............................. GGCCGGGCCCACGAGAGTGAGGGGTGGGCTGT 1733142 29 100.0 32 ............................. GCACCAAACTGCATGTGCCATTGGCAAGTGAT 1733081 29 100.0 32 ............................. TGACGGTGGGCGGGCTTGAGGTCGAAGTAGCG 1733020 29 100.0 32 ............................. CGGAGCTGAGACTGATCGCGAAGTGCTGGAAC 1732959 29 100.0 33 ............................. CTTGGCACCCAAGCCGCTTAACCGAGACCCGAA 1732897 29 100.0 32 ............................. TGGACGGCAGGAGATGGCGCTAGCCGGGACAC 1732836 29 100.0 32 ............................. CCGTGACAGGTGTCGGTCTTTTGTCGTAGTGT 1732775 29 100.0 32 ............................. GCCCGGTCACCCTGCGGCCGGCCCAAGCCCCG 1732714 29 100.0 32 ............................. TTTTGCCCGCCCCCCCGCAGGCCCCGCACAAA 1732653 29 100.0 32 ............................. TCGATCACCGGTTTGACCGGTTCGACCGGGGT 1732592 29 100.0 32 ............................. CGCGTCATCCCCGTCCCGGTGCTCCAGGCGGA 1732531 29 100.0 32 ............................. CAACGCAATTACCTGCTCCCCGCGCATGCGGG 1732470 29 100.0 32 ............................. GCGGTGGCGGCGCAAAACGCCATCCTCGTCGA 1732409 29 100.0 32 ............................. GACGGCGTGTGGAAGCAGCCCAAGGTCCTCGC 1732348 29 100.0 32 ............................. GGATACAAACTGATCAACGACCCCGAGCCGCA 1732287 29 100.0 32 ............................. TGGTACCCCGCACGGAACTCGGCGATCGCCTG 1732226 29 100.0 32 ............................. CGGGTGGTGGTCTCGGCGAGGCGGGCGAGCAC 1732165 29 100.0 32 ............................. CATCTACGAGCCGGTGAACGCCAGCGCACCGG 1732104 29 100.0 32 ............................. TCCGCGGTCACGGACACCACTTGGCCGGACCG 1732043 29 100.0 32 ............................. TCAGACTCCCTGGATGCGGGCGATCGAGGCAG 1731982 29 100.0 32 ............................. AGTCTTCTTAGAGACTCCGGGGTTTACCGAGT 1731921 29 100.0 32 ............................. ATCCTTTTCGCCCTCGCAGATCCAGACGACCC 1731860 29 100.0 32 ............................. CGCTGGGGGGTGCCGGCCGGGGCGTCGTCGAG 1731799 29 100.0 32 ............................. GACGGCGTGTGGAAGCAGCCCAAGGTCCTCGC 1731738 29 100.0 32 ............................. GGACCGCAGGGTTCGACGAAGTGGCGGATTCC 1731677 29 100.0 32 ............................. GCCAAGTCCACGCTGCTCGCACCCGTCAACGT 1731616 29 100.0 32 ............................. GCCAAGTCCACGCTGCTCGCACCCGTCAACGT 1731555 29 100.0 32 ............................. GCCGGCCAGGACAAACCGAAGACGGCGCGCGG 1731494 29 100.0 32 ............................. CGGGCACCCCCACCCTTAACGGGCACGCCGGT 1731433 29 100.0 32 ............................. CGGGGGATCAGATGAGAGGACTCGCGCTTGTC 1731372 29 96.6 31 ............................A CTTGGATCTCCCGCAGGTCCAGGTCGACGTC 1731312 29 100.0 32 ............................. CGGCCTGTACGCCCTCCCCGGGGCCACCCTGT 1731251 29 100.0 32 ............................. TTCTACCGCACAAGGGAGGGCAGCACCACCGT 1731190 29 100.0 32 ............................. GCCTCTGCGTGGCGCTCAGAGGCCCGATTCCG 1731129 29 96.6 22 ............................T GAGTAATTCCGGAGAGGACTAG Deletion [1731079] 1731078 29 100.0 32 ............................. CGGCCTGTACGCCCTCCCCGGGGCCACCCTGT 1731017 29 100.0 32 ............................. GGGTCGAGCACGGTGTCACCGGGGCGGGTGTG 1730956 29 100.0 32 ............................. GAGGGCCCATTGGGGTTAGCAATCGGCGGCGG 1730895 29 100.0 32 ............................. CACGACGTCGTACCCGGCACCGTTTCGCCAGG 1730834 29 100.0 32 ............................. TGGCTCTGACGATCATGCTGCGGGGCGAGGAC 1730773 29 100.0 32 ............................. GTGAGCTCGTAGGCGATTGGAGCGATTCATAC 1730712 29 100.0 32 ............................. CTCGAGATTCGTGCCGCATCCCGGTTCGGCGA 1730651 29 100.0 32 ............................. GTGGCTATAAGATCACGCGCTTCGTCGAGGAA 1730590 29 86.2 0 ..........T..G..G...........G | ========== ====== ====== ====== ============================= =================================== ================== 80 29 99.7 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : TCTTGATCCTGACCCGCTGTCCGGCCGGGCTGCGAGGCTTCGTGACTCGCTGGCTGATCGAGATTTCCCCCGGTGTCTTCATCGGCGGGCCGTCGGCCCGGATCCGGGAAGCACTATGGCGAGAAGTGTGCAGGTATGCGAACACGGGGCGGGCTCTTCTCGCCTATACCACGGACAATGAGCAAGGATTCACCTTCAAGACTCATGATCATAAATGGCAGCCCGTCGATCACGACGGTCTCATTCTGATCCGGCGCCCGAAAGAACAGCCCGCCGTCTCCGCAACCCCTCCCCCGAGCGGCTGGAGCAAAGCCGCGCGCCGGCACCGATACGGCCGACGCTAAGGGAGAGTGGCTCGTGTCCACGGTGCTCTCAGCGCCGCCCATCGAGAACGACCGTCCCCCAGCTACGACCCCCTCTCCTAATAGTCCAAAATGTCCGATCCTCTGAAAGTGGTGGAAATCCGCGCCTGCGCGCGATAAACGCGCAGGTCGGGAAGC # Right flank : TCACCAGCACCCTAAGTGGGACACCCATGTCTGATCTTCCCGTCTGCCGTCGCCCCGCCCCAGGGACAACAGGCCGGCGACGGAGGGTCAAGCCCCGATTCGTGTGTACTTGACCCGTAACCTTCCACGCGCGCCGGTTGCCCTGCCAGCACAGCCGGGCTTGACCCGCAGGAGCCGGTCCTTCTGGGCTTTGCCCGAGTCGATGACGGGCGGGAATATCAGGACCTCTCCCCCGGCACATGCATGGGCACCACCTGAATGCTTCTTCGTGATCTTGAGGGCTTCTCGGAGCCGGACGCCCCGGGGTTTTGGGCAGAGCCCAATGCCCACTCGGCAATGCTGCCTGAGAACGAGGCGCGCGCGCCGAGGGGGATCGGCCCCAACGAGGCCACACGCCCGCTGAAGGCAGGTCGCGCGGCCCAAAGGTGGCTCAGCTCGGCACGTGCAAGTTGGCCGGCCGTGGATCTGAGTGGCGCACCGGAGCCGTGCTGCGCTCTTCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1748310-1744835 **** Predicted by CRISPRDetect 2.4 *** >NC_014165.1 Thermobispora bispora DSM 43833, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================================== ================== 1748309 29 69.0 33 T.C......A...CG.T....G...G..T CCTCCATTGGGCGCTGGAAGACGCGTGCGAAGC 1748247 29 75.9 180 T.T......A....T.T....G...G... CGCGTGTCGCCGTGTCGTCCGGTGACACCGCCCATCGGTTCTTGCCCTGCGACGGCATCACCCGGCCGATCACAGCTGACAGGCAACGAAACCTAGAGCTTTACATAGTCCAAAATGTCGGAATCTTTGAAAGTGGTCAGAAACCGCGGCCGCGCGACATGAAAGCGCAGGTCGCGGAGA G,G [1748219,1748221] 1748036 29 100.0 32 ............................. AGGGGGTCTCTTCGGTTTCTTCGCCGCATGGA 1747975 29 100.0 33 ............................. ATTTCCCGCCATGCCGCGCGTGCGACACGTCCA 1747913 29 100.0 32 ............................. AGCACATTGCCGGCCTCGTCGCGGTAGAGGTA 1747852 29 100.0 31 ............................. CGGCCCCCCCGGGGGGGTAGGGCGCCGCGTG 1747792 29 100.0 32 ............................. AGGATCGGGTCCTGCAGGGGGCCGAAAACATT 1747731 29 100.0 32 ............................. TTCGTCTTGCCAGCATGGGGGTCGACGTACGT 1747670 29 100.0 32 ............................. CGTCATAGAGATCATCAGGCGATAGAGCAAAC 1747609 29 100.0 32 ............................. GTCCACCGGGATGTTCCGCATGCCCTGCTCCT 1747548 29 100.0 32 ............................. TCGACAGGAGTGCCGTCCAGGAAGTAGCGGCG 1747487 29 100.0 32 ............................. CGCCTGCGGGTTGCCGACCTATATCAACCTGT 1747426 29 100.0 32 ............................. GGTGTCTGGCCCAACGGTGAACCGCAGTCGGT 1747365 29 100.0 32 ............................. CCTCGGCCCGCAGGCGGGCCAGGGCGTGCTGC 1747304 29 100.0 32 ............................. CCGGTCGAGCCTGGCCACCCCGTCATCGAACA 1747243 29 100.0 32 ............................. TCCAGCACCCGCGCGGTGATCCCGTCGGGGGT 1747182 29 100.0 32 ............................. GGCCTCTCGCATGCCTGAGTGACTAACTGCGT 1747121 29 100.0 32 ............................. CCGGCCCTCGACCCGGCCTACATCGCTGCGTT 1747060 29 100.0 32 ............................. GAGCGGACGTCTCGCGGCGTGATCTTGTCCAG 1746999 29 100.0 32 ............................. ATGATCAAAGGGGTCATCGCCCTCGTCTTCCG 1746938 29 100.0 32 ............................. GCCCGAAGCTCCTCGGTGCGGGCACCGGTCAG 1746877 29 100.0 32 ............................. CGGCACCCCGAATTCGGGCAGCATGACACGCT 1746816 29 100.0 32 ............................. GGCCTTGGACACCATGCCCTTGATGCCGTTGA 1746755 29 100.0 32 ............................. GGACATTGTCATGTATTCCGAACGGGTCGAGG 1746694 29 100.0 32 ............................. TGTTGTTGTTGTTGGCGAGTAGATGGACCCCC 1746633 29 100.0 32 ............................. CGCGCTTACCAGGGCCAGTGTTCTGCTGCTTG 1746572 29 100.0 32 ............................. ACGGTCCGGAGCTCGGACGGCCTGGCGTCGTT 1746511 29 96.6 31 ............................T GCTTAGCCGCGGCAGACATCGAATGGGCTAC 1746451 29 100.0 32 ............................. AGCCACTCGATCCGGGTGAGCGTGCGCGACCG 1746390 29 100.0 32 ............................. CGGCTTCACACTGTGGTGAGCGGCGGACACGC 1746329 29 100.0 32 ............................. TATGGATACTCTCCGTGACTCCCTGCAGGTCA 1746268 29 100.0 32 ............................. CAGGCCGCCGCGGTCGCCGACGAGATCGCCGA 1746207 29 100.0 33 ............................. GGCTGGTACAGCTTTATCGACAACGGGTCGTAC 1746145 29 100.0 32 ............................. CCGGCGGCGACGGCCGGGATGCGCTCGGTCAT 1746084 29 100.0 33 ............................. CCACCCGCGGCGCTGTGGCGGTCGTGCGTTTCA 1746022 29 100.0 32 ............................. ACAAGCTTGTTGCCGTGGCAGCAAGCAACGTT 1745961 29 100.0 32 ............................. ACCAAGCCGGTTTCGACCCAGGCGTCACCGAA 1745900 29 100.0 32 ............................. TGCGCGTACACCGATTTCCTGTACGTCCACAC 1745839 29 100.0 32 ............................. ACGGGGAGCTCGCGGTCGGCCGTGGCAGTGGC 1745778 29 100.0 32 ............................. CCCCATCCCTACCCCCTTCCCGAGGCCCCTGC 1745717 29 100.0 32 ............................. AGGTACTGGTCGGTGAATGACTTGCCGGCGAT 1745656 29 100.0 32 ............................. AACTCGGCGAGGGGCATGCGCTCGAACCGGTC 1745595 29 100.0 32 ............................. GAGTTCATCGGGCCCTACTACGACAAGGACGC 1745534 29 100.0 32 ............................. ATTGTCCGTGCCCTGCGCCTGCGACTGGATGC 1745473 29 100.0 32 ............................. CGTGCGGACGCGTAACCTCGACCCTGCGTGAC 1745412 29 96.6 32 ..A.......................... GCGACCGGCGCACCGGGCGCCCTCGTCGTGGG 1745351 29 96.6 32 ............................G GCGGAGATCATGCTTCGCGTGATCGGAGAGGG 1745290 29 100.0 32 ............................. CGTTCTACGCCGCGCTGGTCGTGCTCCTGATC 1745229 29 100.0 32 ............................. CAGGCGATCACGGTTACTCAGCGGCGGCGGGT 1745168 29 100.0 32 ............................. TCCTCCTCGAGGTCGGCCGCCCACACCGTCCT 1745107 29 100.0 32 ............................. TCCATGTGGCCTGGCATCATGCCGCCTCATCC 1745046 29 100.0 32 ............................. GCCCCCGGGTTCTGCGTGAGGGCCTGGGCGAA 1744985 29 100.0 33 ............................. CCGCAGGATCATCCCGTCGGCGGCCGGCACCAT 1744923 29 100.0 31 ............................. CCGCCTCTTGGAGACGGTCCCCGACCCCGCT 1744863 29 93.1 0 .........A................T.. | ========== ====== ====== ====== ============================= ==================================================================================================================================================================================== ================== 55 29 98.7 35 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : CCGCGGCCGGAGGGCAGGCAGCGCCCCCGGGTGAAGGCCACCATCGTCACCCGGCGCCGGTACCTGGCCGACGCCGTCTTCACCGTGACGGTCGAAGGGCCCGCGCCGCGCATCGCCGAGCTCGCCGTGGGCGCTGCGGCGGCCGCGCTGGCACCCCTATCTCGGGTGCCGCTCCTGCCGCCCGACGAGCCGCTGCTGCGCGAGGCGAACGGCCCGTCGCCGACCTGCACGAACGGGTCCCCGCCGCCCAGCGGCTCACCGGCGACGAGGAGCCGCTGGCCGACTTCGCCGTGGAAGAAGCGGACGCCGGCGCTGACGCGGTCACCGAGGTGGCCGACGTGCCGGAGAGCATCGACCGGTTCGACCGGCGCCACCGCGCGCGCCTGCGCCGCGGGCCCGTACGGCGGCGCCGTTCCCGGCTCGGGTGATCGGGATTCGCGGTCCGCGGGCTCGGGATCGGATCGGAAGTGGTATGAAGGATTAGCCGGCCGGAAACCGGC # Right flank : GGGCGGACTCATAGCGAAATTGCATGATACGCGGCACCCTTCACAGAAGCAGGAAACTTTTTCCACTCTAGTTAGTCAATTTGATAAATCCCAAGATATTTGTTCAGGTGTGCCGTTTAATAGCCTCATGCCGGACGAAGAGCCGTCCTTTCACGTGCACGCCGAACGCTTATCGGCTGCGGCGCGCACGGTATGGGCGAAGTACGACCGATCCACCGACGGATGGTTGCCGCTCTGGCGGCACATGGCCGATAGCGGCGCGGTGGCCCGGCTGCTGTGGGACCGCTGGCTTCCGCCCCAAGTGCACCGGGTGATCGCCGAGTGCCTTCCCGGCGGCGAGGAGGAGGCGCGCCGGCTGGCGATCTGGCTGGCGGCGACGCACGACATCGGCAAGGCGACACCGGCGTTCGCCTGCCAGGTGGAACCGCTCGCCGCCCGGATGCGTGACGCGGGGTTGGACATGCCGCCGGCCAGGATGCAGGATCGGAAGCAAGCCCCGC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 2739986-2745997 **** Predicted by CRISPRDetect 2.4 *** >NC_014165.1 Thermobispora bispora DSM 43833, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2739986 29 100.0 32 ............................. CTCAGCTAGCTGCACTTCGGTACCGGCGGGGT 2740047 29 100.0 32 ............................. CCGGACTACCCGCCGTGCCCGATGCGGCGCCT 2740108 29 100.0 32 ............................. TTGCCGCGGCTGGGCTATGTCCAGGAGAGCGA 2740169 29 100.0 32 ............................. TACTCCCCAGTCCCGGCCGGGTACTCGTCGAG 2740230 29 100.0 32 ............................. GGGTTCAAGCGCCACCCCGATACGGGGGAGCT 2740291 29 96.6 32 ............................T GAATCCAGGTTGGCCGTGCCCACCGCGTGCAC 2740352 29 100.0 32 ............................. ATCGGGGCAACGATGCCGACCCCGAGCGCGTA 2740413 29 100.0 32 ............................. CAGCAGATGGCGACGTACTCGCCTGAGATGGC 2740474 29 100.0 32 ............................. CTCCGGTGTTCCGCCGCGCACCCGGATCCTGG 2740535 29 100.0 32 ............................. GGACTGTACTCCCGATGTACTCGCGCAGGTCA 2740596 29 96.6 32 ............................A CGCGCGGCCGAGCTGGGCCACCCGCAAAAGTG 2740657 29 100.0 32 ............................. CTGCCTCGGGGTGTTGAGGCGATCGAGGTATG 2740718 29 100.0 32 ............................. CGGGCTGGACAGGCTCACCGCCGTCTACTGGC 2740779 29 100.0 32 ............................. GGGGCCGCCGCGCTCAACGTCGCCCTGCAGGA 2740840 29 100.0 32 ............................. AGCTCCGGATCTCTGGCCTAGGGCGCAACGTC 2740901 29 100.0 32 ............................. CCGTCGCCCGATCTCACGGTCAGCGGCAACGA 2740962 29 96.6 32 ............................T TCGTGACGACCTCAACCGGCGGCTGTATGAGC 2741023 29 100.0 32 ............................. GATGACACCCTGCGCGACCCGGACCAGGCCCT 2741084 29 100.0 32 ............................. AAACAGGGGCGCCCACCCCTCACCGGGGCAGG 2741145 29 100.0 32 ............................. TCATGTCAAACACGTGTTTGCGCAGGTCAAGG 2741206 29 100.0 32 ............................. GGGTCCTGCCCTCCGCTAGGCGGCGGGTCTTA 2741267 29 100.0 32 ............................. ATCATCCGCCAGCAGCATTTCTCGGTCTTGGA 2741328 29 100.0 32 ............................. CTCGTCCGGTAGGGACATATAGACGCATTTGG 2741389 29 100.0 32 ............................. CCGGCCCTGGACCCTGAATACGTCCGAGCCCT 2741450 29 100.0 32 ............................. CCGATGCAGCGGCTGCGGCCGCCTGAGGTGCC 2741511 29 96.6 32 ............................T GAGCGCCACCAGCGGCACTCGGGGTGCCCGGT 2741572 29 100.0 32 ............................. CACGCCAGGGCGCACCTCGACGCCATGGCCAA 2741633 29 100.0 32 ............................. GGTAACTGGAACCCATTTCCGAACTGTGGGCA 2741694 29 100.0 32 ............................. TGGCTCCAGCTCGCCGAGACGGCCGAGGCCAC 2741755 29 100.0 32 ............................. GAGTTCGAGTTCCTGCGGCAGACAGCGCGTGT 2741816 29 100.0 32 ............................. GGGGATACGGCCACGGATAGCCATGTCTGTCC 2741877 29 100.0 32 ............................. GGCAAGCCGTCACCGACAGCGGAACGCCGCCG 2741938 29 100.0 32 ............................. TCGCCGTGCATCCCCGGAGACCACGACTCCTA 2741999 29 100.0 32 ............................. GAGGGCGGCTGGCTCGACACGACCACCGGCGA 2742060 29 96.6 32 ............................T CTCGAACCGCCTGGACGAGCTCGTGCGGGTAG 2742121 29 100.0 32 ............................. TGGCCTGACGTGTACGCCGACCCGAGCTGGAA 2742182 29 100.0 32 ............................. AGCGAGGAGACAAGATGAGGCTCGAAGTTAGA 2742243 29 100.0 32 ............................. GACGGGCTGCGCTTACGGCAGGAAGCCCACGC 2742304 29 96.6 32 ............................G TCACGCCGGAGCAGTTCCAGCGGTTCAAAGCG 2742365 29 100.0 32 ............................. CGCTGCATCGCCCCATCGGCGTTCGGTGACAG 2742426 29 100.0 32 ............................. CCCCGGACGGCGCGCCACCTCTGCCAAACCGG 2742487 29 100.0 32 ............................. GCCGGCCTCGACGCACGCCTGAAGTGGCTCGG 2742548 29 100.0 32 ............................. GCTTGCCGCGCCGCTGTCGTCATCTCCGGCTA 2742609 29 100.0 32 ............................. CTCCCCGTCAACCTCTGCGCAGGGTGCGGCAC 2742670 29 100.0 32 ............................. TCGGCCGGGGGACCCGCGCGCCCCCGTCGCCC 2742731 29 100.0 32 ............................. CCGTTCACTGCTCTCCTCTCAGGCTCGCACCC 2742792 29 100.0 32 ............................. CGCGGCACCCAGCCGGCGGGGATGGTGATGAT 2742853 29 100.0 33 ............................. CGGCGGTGGGTCAACGCCGGGCGCCCCAAAGAA 2742915 29 100.0 33 ............................. ACCACGATCATCGGCATGCCGCCCAGGTCCGGA 2742977 29 100.0 32 ............................. TCGTCACCGGCGAGGGCGACACCCTCGGGGAG 2743038 29 100.0 32 ............................. TCGCCGAGCTGATGCGCGCCCACGGCATACCG 2743099 29 100.0 32 ............................. GGTTCGCCCCACCCCGCAGCATGGGGTGGGGC 2743160 29 100.0 32 ............................. GTGGGCGAACCGTCCTCGCGGGGGAACCACTC 2743221 29 100.0 32 ............................. CCCGGGCCTCCCTATGGACGGCACCTATCGGG 2743282 29 100.0 32 ............................. GGTGGCCCATCGTCGGCTGTCCCACTGGAGCC 2743343 29 100.0 32 ............................. ATGGCGCCGCGGGCGGTCTTAAGGAGGGTGAA 2743404 29 100.0 32 ............................. GGGCGCGGGTTGGTCTGCCTGTCCTGGATGAA 2743465 29 100.0 32 ............................. CGGTCGGGGATGCCGTGCCGCGCGGCCCGCCG 2743526 29 100.0 32 ............................. GTGGTGGATTTCCTGGGCGGGACGGTCATCCC 2743587 29 100.0 32 ............................. GGGCGCGGGTTGGTCTGCCTGTCCTGGATGAA 2743648 29 100.0 32 ............................. CGGTCGGGGATGCCGTGCCGCGCGGCCCGCCG 2743709 29 100.0 32 ............................. GTCTACGACCTCCAAACCCTCGCCGAGCTGGA 2743770 29 100.0 32 ............................. TCCACGATCACCGCCGAGGGCGTGCTCCTGTA 2743831 29 100.0 32 ............................. GTGCTGGTCGCGAGGGGTCCGGCCCACGCGAG 2743892 29 100.0 32 ............................. CGGGAGTCGATCACCTTTGAGGAGCTGTACGC 2743953 29 100.0 32 ............................. CGGGGTGAGAGGTGGTTTCAACCGTGATTTGG 2744014 29 100.0 32 ............................. TTCTGCACGAAGGTCGCCACACGATCCCGGAT 2744075 29 100.0 32 ............................. CCATGCCCAACTACCCTGCGCGCCCTCGGCAC 2744136 29 100.0 32 ............................. GGTGCCGGTGGACTGCTGCTGGTTCTGCTCGT 2744197 29 100.0 33 ............................. CCTCAGCGCGGCGGCGAGAGACGGCACGCTCGG 2744259 29 100.0 32 ............................. TCCGCGCGCACTCCCGGGGACCGTGGTCCGGG 2744320 29 96.6 32 ............................G TCAAGCGCCTCGACTAGGTCGCGCACGCGCTC 2744381 29 100.0 32 ............................. TCCTCCCCCTGCAGGGTGATCACGTCGATTTC 2744442 29 96.6 33 ............................A CTCGACCCCAAACTCGGCCCCGCCGCGGCGGCC 2744504 29 100.0 32 ............................. TGGGCCAGATCCGATTTCGACCTAGCCCAGTG 2744565 29 100.0 32 ............................. CGTCATACAGGGCGCCGCGGCCGATGAAGTGA 2744626 29 100.0 32 ............................. CAGCCGAACGCCACGGCCACGGCCAGGAGCGA 2744687 29 96.6 32 ............................T CGGAGGGGAGGAAGCCGCCGCGCGTGAGCCAC 2744748 29 100.0 32 ............................. CCCGTAAAAGATCGTGCCCGCCGTGCCCGACA 2744809 29 100.0 31 ............................. CAGCCCTTGATCACGCTGGGGAGCTGGGGAT 2744869 29 100.0 33 ............................. CGTCGGCATCGAGCCCCGGCCGCACTGGCCGGA 2744931 29 96.6 33 ............................A CTCGACCCCAAACTCGGCCCCGCCGCGGCGGCC 2744993 29 100.0 32 ............................. GCCGCGTTCGGGTCCATGCCCCACTCCTTTCT 2745054 29 96.6 32 ............................T CGAGCGGTCCGTGCTGCGAATCTCCGAGTGAC 2745115 29 100.0 32 ............................. CTAGCGCCTAAGGCCGGGGCATGTGCCCCGGC 2745176 29 100.0 32 ............................. CCGGCGGCGCGTAGCCGGGCGAGCGCGGCGTC 2745237 29 96.6 32 ............................T CGGGGCACGCCACTCGGCAGGCAGGTCTACCA 2745298 29 100.0 32 ............................. ACGGCCCGGATCACGCTCCGCTGCTGGGACAG 2745359 29 100.0 32 ............................. GCCTCCCCACCGGCACCCGCGTCCGCGAGATC 2745420 29 100.0 32 ............................. AGGCTGCTCGACCAGGGGTCGCCGTACCGGGA 2745481 29 100.0 32 ............................. AGCCACGCGACCCGGTACCAGTACTCGGTGAG 2745542 29 100.0 32 ............................. TGCGGCCAGTGGTTGAAGTAGACGCGGTGCTT 2745603 29 100.0 32 ............................. TGCGGCCAGTGGTTGAAGTAGACGCGGTGCTT 2745664 29 100.0 32 ............................. TGCGGCCAGTGGTTGAAGTAGACGCGGTGCTT 2745725 29 100.0 32 ............................. TGCGGCCAGTGGTTGAAGTAGACGCGGTGCTT 2745786 29 100.0 32 ............................. TCCTTGGGCTTTTTGCTGGTCGGCCGGGGCAG 2745847 29 100.0 32 ............................. CGGTGGTTCACCTCCCGGCGCCAGCTCGCCAC 2745908 29 100.0 32 ............................. GTCGAGGCCGTAGTCTGCGACTCGCTCGGCCT 2745969 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 99 29 99.6 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : AGCTGGGCTGCGGAGACATGGCCCTCAGCGGGAAATCAAGGAGGTGGACTTCCCCCGCCCACGGGGATGATCCCCAAGCCACGGGCAGCGGCGGAAGCTGCTGGAAGTGCTCCCCGCGCACGCGGGGACAATCCCCGCCGGCACGCTAGGTGGGTCGCCTGTATCTGATCTTCCCGTCTGCCGTTGATCCGCCCTCAGGGGCAGTAGGCCGGCGCCGAAGGGTTAAGCCCGGCTGTGCCGGCGGGGCGACCGGCGCACGTGGAAGGTCACCGGGGACAGGTACACGCAAAGCCGGGGTCCCGTAGCAGCAGGTCTACTAGCTCCTCCGAAGTTGGACGGCACGCGAGACGATCGAGGGCTTTGCAGTAGCATCATTGAGCATCAGATAAATACACTAACTACCGAAGGGCACTTTTTATCCTAAATGTACTGTATGCCCAAATTGGCGAAAGTGGTCGAGACTCGCACCTGCGCGATCTAAACGCGCAGGTCGCGGAGGG # Right flank : CCCGCCAGCACACCAGGTAGGGCACGGCCCGTGGCTGACTTCCCGTCTGCCGCCGACCCGCCCCAGGGGCAGCGGGCCGGCGACGAAGGGTCGAGCCCGGCTTCGCGTGTCCCTGTCCCCGGTGACCTTCCACGTGCGCCGGTCGCCCTGCCTGCGCAGCCGGGCTTGACCCGCAGGAGCCGGTCTGCCGGGCTTTGCCCGGGTCGATGGCAGGCGGGAAGATCAAGGCCTCTCCACCGCTCATCTCTATGGGCGCCGTCTGCACCGCTTCTTCATGATCTTGTGGGCTTCCCGGAGCCGGAGGCCCCGGGGTTCGGGGCGGAGCCCCAATGCCCACGTCGGCGATGCTGCGTCCTTGACGAGGCGCGCGCCCGCCGAGGCGGGACCGGCCCGGAAGAGGCCGCACGCCCGCCGTAGGCGGGCGCGCGGCCCAAGGATGGCTCAGCTCGGCGCGCGCAAGTTGGCCGACCGTGGCTCTGAGGGGCGCACCGAACCCGTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //