Array 1 18711-19533 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJUWH010000021.1 Staphylococcus epidermidis isolate Sep_C16_HC_2017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 18711 36 100.0 35 .................................... TGGAGGTATAAATTATGGATAATACAAAAATTAAA 18782 36 100.0 38 .................................... TCAGGTTCAGTAACAACATCTTCTGCACTTTCTATTTT 18856 36 100.0 36 .................................... AATATAAGCGTAAAAAGTATTGTCTTTATATTGACT 18928 36 100.0 36 .................................... TTCTGAAAGCCAACAATTATTTTAAATTCTTTTCGC 19000 36 100.0 37 .................................... CTTTAAGGTAACTGAAATTGATAACACTCTTCCAGAT 19073 36 100.0 34 .................................... GGTGCCAACCTGTGCCCCCTAAATCATTTCTGTA 19143 36 100.0 35 .................................... CATTTCAATCATATCCTTTTTAATAATTTTTTTAT 19214 36 100.0 37 .................................... TGTTCGTCTATGCCGTCATAATGTAAATCACTTACTA 19287 36 100.0 34 .................................... TTCAATAGCCCAATTAATAACATCTTTCTTCAGT 19357 36 100.0 35 .................................... TTAACTTCATTTTCACGACCTACTAATGGACCTTG 19428 36 97.2 35 ...................................T ACATCGTCAGCCATGTGGTTTGGTAAGTTTACAAG 19499 35 86.1 0 ..........T.................G.-...GT | ========== ====== ====== ====== ==================================== ====================================== ================== 12 36 98.6 36 GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Left flank : GCAAAAATGGATTTTCGTTTCTTATGATATGCAATTAATCCTCCAAAAAATTAAGCATAATGAAAATTGTAAGTTTCATGCGGTTCCTCATCTTAATTTCTATGAAATGAGGTACGACCTGAGGAGTAGGTTTACTGAGAAATAATGTATTTACGCTGGGGCTTCAAGTCCAATTTAGTTTTTACATTTCATACTTGCACATTATCAAACAAAATCAATTATTAAAATAGATGTTTAAGTATTTTTCTTCTTGTAGTGAGGGAACGTCTAATTTTTATTCGAAATATAAAAAGAAATGAAAGGTTAAATTAATATTAATTTTATTAAATGAATAGGCTAAACCATCTTAAATGTAGTATACTATTAATATAAATGTAATTATTATAAAATTTGTCAAAAAAAGTGACATATCCTATAATCTTGTACTAGTGATTGTCATATTTTTTGACAGCAAAAATGATGCTTGAAATATAGTTGTGATGGCATTTGTTAAAGTATCT # Right flank : TGTAAATCTAACAACACTCTAAAAAATTGTAGATTTTGAATAAAATACGCATTGATTAATTTCTAGGGGATGGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACTGCGAAGGAAAATAGCATTAAATTTAGAAATGTCATAGATAAAAGTGAAAAATTTTATTTGTTTGAAGAAATTGAAGCTATTATTTTTGATCATTATAAAAGCTATTTTTCACATAAATTGGTAATTAAATGTATAGAAAATGATATTGCGATTATATTTTGTGACAAAAAGCATTCTCCAGTTACACAGCTCATTTCTTCATATGGCATGGTTAATCGTCTTAAAAGAATTCAAAGTCAATTTCAGTTATCGGGAAGAACAAAAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTTTTAACCAAACACGATGTCTTGAAAATAATTTACATAATGAAAATGTTAAGCTGATGTTAGGTTTTGCAAAAGAAGTGAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACCACCCCGAAGAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [15,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 28255-28578 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJUWH010000021.1 Staphylococcus epidermidis isolate Sep_C16_HC_2017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 28255 36 91.7 36 .....C............CG................ AAGCAACTAGCTCATCGTTTTCCGTAGCAAATTCAA 28327 36 91.7 37 .....C............CG................ AGATTAAAACTATCCAAACCCACACCGGCACATCTAA 28400 36 100.0 36 .................................... TCATTTCTATCCATTCAATATAAGTTTCACGTTGAA 28472 35 97.2 36 ..........-......................... TCAATAAGCCACGAATTAATGTATACGATATCTCTA 28543 36 88.9 0 .............T.....A.............T.T | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 93.9 36 ATTCGATAACCACCCCGCATAAAAGGGGACGAGAAC # Left flank : GTACGTCTTAATATTCAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGATGTTAAACGTTTTTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGACAAAGAAACATTAGATTTTTTAATGAAAAATGTTAATATTGTCGACTACAAATTGAAAAGTACACGTTTTAACTTAGAAAAAGTTAAAATTCCTTCGTTTACAGGAGAAATGGTGTTTAAAATTAAAGGCCCCTTACCTTTTTTACAGTTAACTCATTTTTTATTAAAGTTTGGCGAATTTTCAGGTTCAGGTATGAAAACAAGCTTAGGTATGGGAAAATATAGTATAATTTAATTAAGACATAGTTAAAATTTAGTTGTCAAAAAATGTGACATTTAGCGTCTATAGTACAGGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTCGAACTATTGATATGATTGGTTTTAAAGAACTGTC # Right flank : TTTTTAGCGTAGTAGCAAATATTAAAAAATATATTTGATTTGATAAACTATCATACGTATCTCAATATTATCAGGTATTCCTAGTTCTCAAGACATGAGTTTAGGAAGATGAGTATTTTTAAGATTTTGTAATTTTTTATTAAATATATTTCTGGAAAGATTTTTTTATAACAGTTGTACCATTTTTATAATTGATATTGTTTAGAATATAAAAGTTACTTTACTTGAAGTATCTGGAAGATGTGTAGGTAAATTGTTTAAATAATAACTTTTAGATATTTCATTGGGTAATATCTAAATATTATAATAAGTATTAAATTACTTTCCGAAACATGAGGTAATATATGAAGATTATAAAAATTTCACACGGGAGCTATGTTGGCTGTTAGTCTATTTTAAGTGAAAGATGTCCTCAATTTTAGATAAGGTGTAAAGAAACGGGGATTAAATGTATTATCAAAAATTGGCTAATTGATGATATTTAAAAATGAGGGGATAGA # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACCACCCCGCATAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 1 11781-12103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJUWH010000045.1 Staphylococcus epidermidis isolate Sep_C16_HC_2017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 11781 36 100.0 35 .................................... TTAGCGTGGATTGCAAATATCTTGAGCCTATTATT 11852 36 100.0 36 .................................... TCCAGTTTCTTGTATTTCTTTGCTAAATAAACCACC 11924 36 100.0 35 .................................... GATAAATATCTATAATTAACAATTTTCTTATTGAA 11995 36 100.0 37 .................................... TCCAACTTACTATTTCCTTCTTGAAAAGTAAACTTCA 12068 36 88.9 0 AT..........C....G.................. | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 97.8 36 GATCGATAACTATCCCGAAGAACAGGGGATGAGAAC # Left flank : TTTTTTAGTAAAACCACTAATAAGGGGACAGAAAGCTTATGAACACAAAAATACTTGAGATTGGCTTCTGTCCTTTAGATTTTACAATCGATTTATAGACCAAATAAAATTTAACTATTTTGTTTATTCAAATTCAGAAGAGCTATCCTCGTGTGATGTGACTGATCTTTCTAAACCGTATAGAAATTTTTCAGATTATTGTTAATAAGCAATCTCTTAAAAAATAAAAATTAAGGAAATTTATATTACTATTATCTAGGTACTAATTTTATCTTTTCTTTTAAATTAAAAAGGAAGAAAAAGTTAAATTTTTATTAAGTTATACACACGATTAATTATTAGCGTGTTAAATGTAGTATACTGTTAATATAAGAAAAGTCATCATAATATTTGTCAAAAAAAGTGACATTCTATATAGTAGTGTGTCGTTAGTTGTCACATTTTTTGACAGCCAAAATAATAATTGAACCCTAATGGTTATGCTATTTAGTGAAGCATCG # Right flank : CCTCATCTTGGTGATCCCAATTGGCTTGGTTAAAAAGAAATCGATAACCCTCGTAGAATAGAGAACAAGTATTAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTTTTGCAATTAATCAACATTCAATTTTTAAATAAACAGAAACAAAAATAACTTTCATACAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAAACTAATACTAAACGAATGGAATGTATATTATTGAGGAGTTTGATGCAGTGTGGTCCAATTTCGAGAGCTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAATCAAGATATAAAAACAAATAGTTTTACCATAACTACATTAGTAAATACTTTATTATTTAGTATACGGATGAAAGCGAAGTGACAGCTAGCAATGCTCCAGATATAGGCATTAGTATTATGAAAGAGCAAGATTATCATTTAGAAAATG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTATCCCGAAGAACAGGGGATGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //