Array 1 43060-41836 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB908393.1 Selenomonas bovis DSM 23594 F599DRAFT_scaffold00015.15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 43059 32 100.0 35 ................................ CCAGACCACATCAAAGCAGACTTAGAATTATGGAG 42992 32 100.0 34 ................................ TCTTAAATAGCCTCCGAACTGAACGAGTAAAAAG 42926 32 100.0 35 ................................ ATCCCTATCCGCAATCGCCTACACATGATTGTAAG 42859 32 100.0 33 ................................ ATCAACGGCGCTCGCGCCCTGCTTCATAGCCGG 42794 32 100.0 33 ................................ CTGCGATGGGAAAGGTTCTGCTCATCAAAAGAA 42729 32 100.0 34 ................................ AGAGTTATCTTTATCGTAGTTATCCATATTCAGA 42663 32 100.0 34 ................................ TCAAAGAGTTAAGAAGAAAGGCGGTTATCAAAAT 42597 32 100.0 34 ................................ CCTGATTTCCCTCGCAAAGTTTGCGCAAAAAAAG 42531 32 100.0 36 ................................ CTGAGAACAACTATATGGGTTCGCATGTTGCATGGC 42463 32 100.0 34 ................................ CTCGCCCATGACATTTCTCTAGCCTCCTACCATC 42397 32 100.0 34 ................................ CAGAATGTTACCCATCCTATGAATGTAATCTCTA 42331 32 100.0 32 ................................ GCGTCACAAATCATCACCGGATGATTTATGAC 42267 32 100.0 34 ................................ ATTGGTGGGGCGCATTTCTTCTTTGCTAAAGATT 42201 32 100.0 35 ................................ GGAAGAACGCCAACACGGCGGCAGCACTGCTCATG 42134 32 100.0 34 ................................ ATTGGTGGGGCGCATTTCTTCTTTGCTAAAGATT 42068 32 100.0 35 ................................ GGAAGAACGCCAACACGGCGGCAGCACTGCTCATG 42001 32 100.0 36 ................................ ATCCGAATATACGGGATATCCGAATTCAGCGGTCAG 41933 32 100.0 34 ................................ GTACAAAGTCATACCAGTGAAGGGTAAGGCGTTT 41867 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 100.0 34 GTCGCTCCCCGCGTGGGAGCGTGGATTGAAAC # Left flank : CGGTGTATATCCTCGTTACGTATGATATCGCCACGACGGATCCGAAAGGAGCAAAACGCCTGAGGCGGGTAGCAAAGTACTGCCAGGATTATGGTCAGCGCGTGCAAAATTCGGTTTTTGAATGCAAGATCGACGCGGCAAAGCTCGCCCAACTGAAAGCGAATCTCCTGAGGTGTATCGATGAGGCGAAAGACAGCCTGAGGATCTATTATCTCGGGAGCGAAAAGCGGTTTAAAGTAGAGCATTATGGAACGAAGCAATCGTTCAACCTTGAGGAGGTAGTGATTATCTAGTCGGAGTGCGAATCCCAAGCAAACAGAAATCCCCATTTCTGCGCTGTGCGCGGGATCCTTTGAGGACAAGTAAATAGCACACTTGGCTTGGACGTCACTCCGATGAAAGAATTTACAAGGTCCCTAAGAACAGAAAAAATCGTGGAAAAAGTGGAGCTTCAATCCCTTTTTTCACGTGGCAGAAGGGAGATAGTGGAACCCTCTGCT # Right flank : ATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGTGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17475-18462 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB908395.1 Selenomonas bovis DSM 23594 F599DRAFT_scaffold00017.17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 17475 28 100.0 32 ............................ ATTATACCACGTTTTCAGTCAGCCATCGATTA 17535 28 100.0 32 ............................ ATTGCATACATTGCCTTTCTGTATGCAACCCT 17595 28 100.0 32 ............................ ATGCCGTCGATATTGTCTGCCGCTTCGCCGTG 17655 28 100.0 32 ............................ AGAAACAGGTTCAGAACTTCGAGTGGTACGTT 17715 28 100.0 32 ............................ AGCATCCCGGGCGGAAAGCCCAATCGCCGAAC 17775 28 100.0 32 ............................ TTTCGCGTGATCTTCCACAAACTCGCCGTTCT 17835 28 100.0 32 ............................ TAAAGGATGTAGCCGAGTATCTTGAGTACGAG 17895 28 100.0 32 ............................ TTCGCCGCCTTAGTCACTTCCTGCGGCTTCCC 17955 28 100.0 32 ............................ GTCTGGACGGCCTGCACGACACGGAACTTGAT 18015 28 100.0 32 ............................ GCAACGAGTGCAGAATTTGATAGCCATGATAA 18075 28 100.0 32 ............................ TTCAGCACTGCGGCGCGCTTGCTCTCTTCCGC 18135 28 100.0 32 ............................ TGTGAGACTTGTACGGCGTGATGTCCTCCCAC 18195 28 100.0 32 ............................ TGTCAAGCAAGCGGCAAAGAAAGCCGCAAGCA 18255 28 100.0 32 ............................ TATCATGGGAAACGCCCTTTTTCTTTCGCCTA 18315 28 100.0 92 ............................ TGCGACATCTCCTCCTCGGCGTAGAGAAAGAGGTGAACCGCTCGAAAAGCGTCCAGGCGTGAACGGTGAGTTTCCTCGGCGTAGAGAAAGAG 18435 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ============================================================================================ ================== 16 28 99.8 36 GTGAACCGCCGTGTAGGCGGCTTAGAAA # Left flank : AGAAAAAAGTCCATTCCTATGCCAGTTACAGCCGCTGGCACAAAGAGAATACGAAAGAGCAGAAAGTGCGCCGCTACCTGAAGCGCCACAGCGATGTGACTGAAAAGGAGGCAAGGGACCTGTTCCCAGGGAATCAATACGGCAAGGAACCGCCGTTTGTCCAGATGAAGAGTTGCTCTAACCATCACCGCTATCAACTATATATCAAAAGAACGGAGAAGCAAGAAGAGGTGAATGGTCTGTATACTACCTTTGGTTTGTCCATGGATGCGACGGTCCCTGAGTGGTAAAATACCAAAATTTTTTAGGTAGTAGGAAGCCCGTGAAATATAGAGGCTTGTCAACGATGAAAAATTTTTGGTAAAATAAAAAGGTCGGTTGCAATACCCTGTAATGATGGGCTTTTTTGCTTGTGTATATGCAGTGAACAGCCGTGTAGAGTGAACCGCCGATTACTGTTACCTCTAGGTACATCTGCTGTTCGTGAACCGCCGTGTAGG # Right flank : AAGGGAGAACTTCCTTCGTACGACATCCTGCGTCGTAAAAGTCAGGAAGCTCTCCATCGGCCTTTGCTGTAATAGAACTCTTGACATGCGTCATGGACCGACAGGGAATTTTTATGTCTCGTGTAGGTTCACCATGCATATGTGAAAACCAACCTCTGTAAGTCTGTCCGTATTCTTGCACACATAGCAGAAACGGTTTATAATTCCATATAGTAGTTTCTTTCCTATATGTTGCGTGAAGGTGGTTTGTTTTTTGCGAGAGAAAGAGCCTGTGGAGAAGGTCATTTATTTTGAGGATCAGAAGGAAGCGTACAGTCTGCTCGGGGGGCGGGATGAGTTCATCCGCGTCTTTCAGGAGAATTTCGATTGTCAGATGGTGAGCCGGGGAGACAGGCTCGAGATTCTCGGCGCGCCGGAGGAGGCGGGGGCTGCCGCGCATGTGCTCGAGGAGCTCCAGTATCTCTATCGGCAGGGAACGCAGATTACGATGCATGAGGTAC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCGCCGTGTAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCGCGTAGGCGGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //