Array 1 58-322 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALPY01000071.1 Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 strain ZN7a-9 contig71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 58 36 100.0 42 .................................... TTATCTTCAGCAAGAGTTACTTCGCCGTACAGGACTTCATCT 136 36 100.0 44 .................................... TAAATTGCTCTGCCCACTCATCGAGGTCACTTCGCTTATAGCGG 216 36 100.0 35 .................................... ATAATGAAAGCTTGACCATCAATTACAACGCTTAC 287 36 88.9 0 .....C...............G........TT.... | ========== ====== ====== ====== ==================================== ============================================ ================== 4 36 97.2 41 GCTAAAAACTTATCTCCGCTAAAAGGAGACGAGAAC # Left flank : CTAAAAGGAGACGAGAACTTTAAAATGGCAAATCAGTAAATTCAATTCCACGAGTTAG # Right flank : CATCAGCGACGCCATTTTCCAATTCGTATCTTGATTTAGCCTCATATTTAGTTATGGGCGGGTATTACAGCTCAAAGACCGACTTTATTAGGCAGCAGATTAAATGGTTTGATGACTATCATAATCCAGTTATTACTGACAATTATGGCAATATTTCACGATTTGCCTTTGGGGATCCTGATTTAACGGTCAGTCATGAGTTTTTCAATATTTCAGCCATTACGCGCTGGGATCTAGACATGATTGATGACGCTTACGAGTCGATGCTTATCAACGAGTGGATGTGCTCCAAAGGATTCAAGATTGTTAAACTTGCTAACAAGACGGGATAAAGGAGAATTTGGACAAATCCACCCAATTTTAATCTTTTACCAGTATAATAAGGTATATGAGCATCTAATTAAGATGATTCAGCCAGTACGGCTTAATTTGCCGATTCATACCGTTAACGGCCATTCTAAGGATACAGAGCAAAAAAAGCATGATGAAAGCGCACACTT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAAAAACTTATCTCCGCTAAAAGGAGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 27883-26935 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALPY01000016.1 Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 strain ZN7a-9 contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================================================================================================== ================== 27882 36 100.0 30 .................................... TACATTGACTAGGTCATCCCACAACTTGGA 27816 36 100.0 30 .................................... ACGCCAATGGCAATCACAATTACCTTCTTG 27750 36 100.0 30 .................................... GCCACGCTATCCGCAAGGTTCGGGAATGCA 27684 36 100.0 31 .................................... CGGAATTGCCGTTGCTGTCGACATGGGCAAA 27617 36 100.0 30 .................................... TCTTACAAAAGCCCGAGGAGCTACCTCAGA 27551 36 100.0 30 .................................... TCGGCATCCCTGACGCTCAAACCCTTTACC 27485 36 100.0 30 .................................... AGATAGCGTTGACCCAGTAATTCCTGCTTT 27419 36 100.0 30 .................................... GACCTTCGAAAAGTTGTAGTCACGGTCTTC 27353 36 100.0 30 .................................... TTGCTGGGAAAGCCCCTAATGCCTTGATAC 27287 36 100.0 30 .................................... TCTAGCAAGAGAGAAGTGACAGACAAGCTT 27221 36 100.0 30 .................................... AGCTCTATTACTTTTGCTTCCGCTTACATC 27155 36 94.4 149 T..........C........................ GTTGTGTAGGTTCAAATCCTGTACTCTCCTTGTTTTGGAATATTTCCATTCAATGTTGTCAATTTTCCCGACGTATGTTGGGGGTGGCCATCATAATGGCCTAATACTAAGACGACAATTCTACTCATTCCACGTAGGTGGGGGTGATC 26970 36 75.0 0 ..........A..........C...G..GAC..AAG | ========== ====== ====== ====== ==================================== ===================================================================================================================================================== ================== 13 36 97.6 40 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAGCTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACCTGCTATCGCGATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTCTTCAAATTTGGTGGTCTACACTTCAACAAGACACTCACTCGCGATCCATATGGTATAATCGAGACAGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGATGCAGAACAGTTTAACGAAATATCCAAGCTGTGCTTAGAGCTAAAAAAGTCTATTATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAAGACCTTGTTGATTGGTACTAGCCTTATATTAAAGCTGTGTTAAAAAATAACG # Right flank : TGCTTTTCATGATTGAGAAGCACTTTTTTCTGTTGAACACAACAACTTAAAAAAATGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCGTGGCGCGTTAAAAGAAGCCGGCCTTGACGCCAAAGCCCTGGATGCTCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATAGCCCGGCAAATTGCTTTAAACGCCGGGATGCGGCAAGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCCCAAATGTTAATCGGTGACCTGGGC # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.91, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //