Array 1 575015-575590 **** Predicted by CRISPRDetect 2.4 *** >NC_014974.1 Thermus scotoductus SA-01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 575015 29 100.0 32 ............................. TGCTCCATGTACGCACCGGCCCCTTTAGGCCA 575076 29 100.0 32 ............................. TCACCGCGGCCAGGACGATGACGGTAGTCATA 575137 29 100.0 32 ............................. CGGCACCAGCCAGCGCCGTCCCAAGCGCACCC 575198 29 100.0 31 ............................. GACTCATGCCATCACCCCCCAGGGCTTGCTA 575258 29 100.0 32 ............................. GCATTCCCGGCATTCCCGGGCCGGGACCTCCC 575319 29 96.6 32 ............................T TTTGGCGTTCCTTTCCTCCTTCCGGGCCGCGA 575380 29 100.0 32 ............................. CCCTCGTCCCGCAGGGCGTGGATGCCCGCCCA 575441 29 100.0 32 ............................. ATGCCGCATCCATAGCCAGATACGGTCGGAGA 575502 29 100.0 31 ............................. CTCCCGCCATAGTGTCAAGGGGGGTACCGGA 575562 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : CTGCCCACCAAGGAGCAGGTCCTCGAGGCCTTGAAGGTGGTCTACGACCCGGAAATCCCTGTAAACATCGTGGACCTGGGGCTGGTCTACGATGTGGAGATCCACGAAAACGGGGTGGTGGACCTCACCATGACCCTTACCGCCATCGGCTGCCCCGCCCAGGACATGGTGAAGGCGGATGCGGAAATGGCAGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCCAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGACTTACTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGTGCGTACAAAGGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GCCTATCCATACATCCTCAGCGTAGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGCATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCCATTTTTCCCGGGGTTGCCCCATACAATGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTATCCAGTTGAAGAGGAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGTTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1184315-1182085 **** Predicted by CRISPRDetect 2.4 *** >NC_014974.1 Thermus scotoductus SA-01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1184314 29 100.0 32 ............................. AGAAGGGAGGTGATCGAGCGGAACTACATTGA 1184253 29 100.0 32 ............................. CAAGTTTTTGCTCAGCCACTCTGGGATTACGG 1184192 29 100.0 32 ............................. TGGCGATGTGGAGAGTTTGAGGGTGGATATCA 1184131 29 100.0 32 ............................. CTCACCCACATCCCCCGGCTGGTGGGGCACGC 1184070 29 100.0 32 ............................. CGGAAACCGCCGCCCCAGCTCGGCCCGAGCCC 1184009 29 100.0 31 ............................. GGATCACGGGAGGCTCCGCCGGCGGAAGCTC 1183949 29 100.0 31 ............................. AAGCGCTCTCGGAGGTAGACCATGCTCCGGC 1183889 29 100.0 32 ............................. ACGGGGATAACCCCTGACCATCCCCGGGCTAC 1183828 29 96.6 32 ............................T TGTTCCGTTTTACGCTGAGATGGCGGAACGCA 1183767 29 100.0 33 ............................. GGTCTCCCTGCCACCGGGCGTGGAAGACGAGGC 1183705 29 100.0 33 ............................. ACGAGGTGGAGCGTCTTCTCTGGGCGGGCGTCC 1183643 29 100.0 32 ............................. GTGCGTCGGGTGAACGAGACTGCAGACCTCTG 1183582 29 96.6 32 ............................A GAGGCCGTCCTGTGGGAAATGGCGACCGGGGA 1183521 29 100.0 32 ............................. TCCAGGTGGGGGACACCCTCGGCCACGTCCTG 1183460 29 100.0 33 ............................. CCGCCCGCATCGCCGAGGAAGCGGCCCGCAACC 1183398 29 100.0 32 ............................. ATCCCACACCCGCACTCGGTAAACTGGTGTAG 1183337 29 100.0 33 ............................. GAGAATGTGTCCCTCGGCCGCCCGGGGCTTATC 1183275 29 96.6 32 ............................T TCGTTCTCCCCGGCGGCCCCAATGCCGGAGCC 1183214 29 100.0 32 ............................. CGTTACCTCCACGGGGCGTGGGAGGCCGGTCC 1183153 29 100.0 32 ............................. GCCACGGTGCCCAGCTACACCGTGGAGGTCCA 1183092 29 100.0 32 ............................. GTACCAGTTCATCTACCCTCTCCTAGTCTATC 1183031 29 100.0 33 ............................. TTTGGCATCGTCATCTACGACCCCCCGGAGCAT 1182969 29 96.6 33 ............................A GCGGGATCCTACCACCCGTCGGGCATACCTGCC 1182907 29 100.0 32 ............................. GCAGGGATCAGCCGTACTGATCGTCACTCACA 1182846 29 100.0 32 ............................. ACGGGCGACGGGTGGATTCTGGACGCCCACGA 1182785 29 100.0 32 ............................. TACCGCAAGGCTTTCGCCTGGTACGACGCCAG 1182724 29 96.6 32 ............................T ACGGCGGTGGCATCCAGGACTTGAGGGGCAGC 1182663 29 100.0 32 ............................. CCACCCGAAGAAGGCAGTGGCGGTTTGAGCTA 1182602 29 100.0 32 ............................. CTGCGGCCTCGTAGGGGCAGGTAGCCGAATGG 1182541 29 100.0 33 ............................. TTAACCCCCAAGGCAGTCCAGGGAGCCATCTCC 1182479 29 100.0 32 ............................. TCATGACCGACGCCGCCCGGCACGGGGACACG 1182418 29 100.0 32 ............................. GAGGCAAAGATGCAGGAGGCGTTCAACCGGAT 1182357 29 100.0 32 ............................. ATAGGGGAGCTGGTCAAGCCCTGGAGGGCAGC 1182296 29 100.0 32 ............................. GTCGGGTCGGGAGGGACCTGGGGCTCCTCCAC 1182235 29 100.0 32 ............................. CAACTGACGCAACTCGCAAGCGAAGGGGTGGT 1182174 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 1182113 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.1 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGGGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCTACGTTTCGCGAACAAAAGGAGATAGGGGAGAACGGTCCTCGCTAGGCTTCCGTCAAACCGGGGGCTCCGGTAGGGGCATGTGCCGGAGTACAGTAAAAGGTGGTGGACCAGGTAAGGGAGCGCCAGGTGCTCTTTGTCCTGGAACTTCCAGGGTAATCAGGGAAGGCGGTGAACTTCAAAGAGCCAGGATGGGCTTTCTAACCCGGGTCGTTTTCCAGGAAAGCCATAGTCCTGCCAAAAGTGATACCTTGTAGCTAAGATGGACCACTTCGACCACCTCTACCTCACCCTCCCCCGTCGCCTCGAGGTCCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1194463-1197065 **** Predicted by CRISPRDetect 2.4 *** >NC_014974.1 Thermus scotoductus SA-01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1194463 29 96.6 32 ............................A GGGACTCTGGCAGGTATCCTGGCGGTTCTGGC 1194524 29 100.0 33 ............................. CGCAAGAAGTGAGCCCACCGGGGCCAGGAGCCC 1194586 29 100.0 33 ............................. GGCCCCCGCATCACAAACTGCTGGATCACGGGA 1194648 29 100.0 32 ............................. CGCACCACCTGGTTGTCCATAAGCCCCCCGGC 1194709 29 100.0 32 ............................. CTCCGAAACCTCCTTGAGCCGCAAAAGCCGCA 1194770 29 100.0 32 ............................. GCTCCCAGGCGTCCCGGGAAAAAATCCGGGTC 1194831 29 100.0 32 ............................. GTGAGGTCTAGGGCGGCGGCGGGCATGAGCAC 1194892 29 100.0 32 ............................. AGCTTGAACCCATGCGGATCACCGCCGTGGAA 1194953 29 100.0 33 ............................. GTGGTGGCGGCCAGGTTGCGCCACAAGGATGTA 1195015 29 100.0 33 ............................. CGCACCCCTCCCCCCACCCGGGCCTGGTACTCC 1195077 29 100.0 33 ............................. GATGACCCTATCGTCCTCGCGGTAGGGCCACAC 1195139 29 100.0 32 ............................. GCCGCCTTCCTCCAGCGACCGGATCGCCCGCC 1195200 29 100.0 32 ............................. CCCCACCCTGAGGGCCCCACGTCTAGCCGTCC 1195261 29 100.0 33 ............................. CGGAGGGCCCTTTCCGCGATTAGCCCCTGGACC 1195323 29 100.0 32 ............................. CGCGCCTGGCGCTCCACGTGCGGGACGAAGCC 1195384 29 100.0 32 ............................. TGGTGACGGCGGTGACGCTGGTGTCCGGGGGA 1195445 29 100.0 31 ............................. CGGTAATCCGGGGCGCTGTGGTGAAGGGCGC 1195505 29 100.0 32 ............................. GATTGGAACGCCAGGGTACCGGACACCTGGCA 1195566 29 100.0 32 ............................. GAAAAATCCACGCCGCATATTCCTTTTTGGGC 1195627 29 100.0 32 ............................. CGGGCGTTTGGGGACGTGGCCGCCAAGTTCGG 1195688 29 100.0 32 ............................. CTACGCCCCCATCCCCAAGAAGGCTAAAGCGG 1195749 29 100.0 32 ............................. AGCCAACCGCCAGTGCAAGCCCCATCGCCATC 1195810 29 100.0 32 ............................. GCCCTGCTGACCTCCTCCAGCAGGGCCCCCTC 1195871 29 100.0 33 ............................. TGGAACATGACGGGCACTGTTACAGGCCGATTC 1195933 29 100.0 32 ............................. GTCCGGGTGAACGAGGCTATGCTGGAGACCCT 1195994 29 100.0 32 ............................. GCTCTGGATGAGGCCAGAGTGCCCCAGAGCGG 1196055 29 100.0 32 ............................. TACCGCCCCCCACGGCGCTGGCAAGGCGCTCC 1196116 29 100.0 32 ............................. CTATTCATCAGGACGAGGGGGGAAGAAAAATG 1196177 29 100.0 32 ............................. GGTTGCGCCCTACAGCGTGTTCCCGGTGCCCC 1196238 29 96.6 32 ............................T TTCCTCGTTGTCGGTCATCGCCTCCTCAGCCC 1196299 29 100.0 32 ............................. GGAAGAGGGCGGTTCTAACTCGAGCCAGGCTC 1196360 29 100.0 35 ............................. GATGAGGACGGGGTTTGGACATGCAGGGGCGGCCC 1196424 29 100.0 32 ............................. TATTTGACGGGGTCGTGGTTAGTGTTGCGTGA 1196485 29 100.0 32 ............................. GCAGGTGGTGGCGGTGTCCCAGGTTTTCCCTC 1196546 29 100.0 33 ............................. AAAGGGGAGGAGGTGGCCTAATGCGCCGGATCC 1196608 29 100.0 32 ............................. CCCCATCTCCCGTCCGATATCCACAGCAATGG 1196669 29 100.0 32 ............................. ACGCCCGGCGGGCGGAGCTTCTCGGGAAGAAA 1196730 29 100.0 32 ............................. CGAGTAGCTTCCCGGCGCAAGGTCGTCCCCGC 1196791 29 100.0 33 ............................. GCCACCCCGCTCGCTCCCAGGCGCTGGATGCGC 1196853 29 100.0 32 ............................. GAGGTGAGTGCTGTGGGCTTTGAACCGGGTGA 1196914 29 96.6 33 ............................A GTCGTATTTAATGATGTATTGGGCGTTCCAGGC 1196976 29 100.0 32 ............................. CATCGGAGGAGGTGGGATGATGCGCAGGGCAA 1197037 29 93.1 0 ..............C............T. | ========== ====== ====== ====== ============================= =================================== ================== 43 29 99.6 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TCTCATACTGGCGGGTCGGGGCCTGATGATATAAGAGCCTCCCGGCAGCGAAAAGGGCTAGGGCCTCCACCGGATGCAAGGTGGGAGGTCGGTCCGGAATGCGGTAAAGGCCGCGGCCAAGCTGCTCTATCCTGTAACCGGCATGGGACAGGGCCTCGAGGTCCCGCTCCACGGTGCGCACGCTCACACCGTAAAGCTGGGCCAGTTCGGAAACCCGGTGCGGGCGAAGGCTAAGGCGCTCCACCAGGGACAAAAACCGTTCCGCCTTGGACTTCGGGTCCATAGTTGGAAGCATTATAGCCCAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGT # Right flank : GAGAATGTACAAGGTTGCCCCGTAGGATAAGCCCCCCAAAGCTTCGGCCAGGAGGGCCTCCAGCCTTCGCTGGAGGTCCATTTCCAGGGGCCGGAGGGCTAGCTGTAACGCGCCCGTAGGCGTGAGGAGGGAGAAGTGGAGAGTCGCCCGCCTGGGCGTGGGGCTTTCCCTGGAGAAGATCTACGAGAGTGTGGAGCTAGGGACTTCTTTCCAGGCCGACTTGGGGGCCAGGTAGTACCATGGAAATGCCATGGGGCCCGAGGAAGTCAAGGCCAGGATAGGACCTTACCGGGCAGAGTTGAGGGAGCGTTTTGGGGTGGAGGCCCTCTACCTCTTTGGCTCCTCGGCTCGAGGGGAAGCGGGTGAGGGAAGCGACGTGGACCTTTTGGTGCGCTTTTCCCGTCCCCCGGGCTTTCTGGGCTGCATGGGCCTGAAGCTCTTTCTCGAGGACCTTCTAGGCAGACCCGTGGACCTGGTCATGGAGCACACCCTGCGGCCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //