Array 1 4092968-4094704 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030214.1 Salmonella enterica strain SA20025921 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4092968 29 100.0 32 ............................. GCGTGCAGCGTGTTTTAAAGGGGGTTTAATAG 4093029 29 100.0 32 ............................. CCATCGCAGAAAACAAACCGGGTTTTATTGCG 4093090 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 4093151 29 100.0 32 ............................. GAAACCGCCCGATTCAAAAAAACGGCCTTCTT 4093212 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTTTCTC 4093273 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 4093334 29 100.0 32 ............................. GCCAGCCCAACACCAGCAATAGCAGCAGCTAC 4093395 29 100.0 32 ............................. ATGAGGCCGCGATGCGCGGCTGGTCAGGTGAG 4093456 29 100.0 32 ............................. TAGGTTTCTTCCTGAAGGCGAAGCATTTTCTT 4093517 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 4093578 29 100.0 32 ............................. CGGCGGGCTCGCTATCAGCCTTGCGGCGTTCC 4093639 29 100.0 32 ............................. TTATTATAAGCGCACTCAGGCCGGAAAAGTTA 4093700 29 100.0 32 ............................. GCTATTTAGCACCTTGCGGTGTTCTGCTATGC 4093761 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 4093822 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCACCAGGTTGAA 4093883 29 100.0 32 ............................. TCTCAATGGGAAAAATCAAGTCAGATGCTTCA 4093944 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 4094005 29 100.0 32 ............................. ATCGACGCTGGTCTGGTGTGGCGCGACGGACG 4094066 29 100.0 32 ............................. AACGCTTTTATTTTTTATGACCCCCCAATTTG 4094127 29 100.0 32 ............................. ACCGAGGTCGATCTGCTGTCTGACGTGCAGCA 4094188 29 100.0 33 ............................. CACCCCATCATCTTCCGCAATCCACATTCCAGC 4094250 29 100.0 32 ............................. ATTGAACCCGCCTACGCGCGGGTATTTTTTTC 4094311 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 4094372 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 4094433 29 100.0 32 ............................. CGTTCGAACGCTACACCCTGGCAAGGGCAACT 4094494 29 100.0 32 ............................. TCGCCCTTTCGTTTCGTGGGAATGTTCAACGC 4094555 29 100.0 32 ............................. GTCTGCATCGCGTACAATGCGCCCGCATCGCC 4094616 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 4094677 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4110966-4113174 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030214.1 Salmonella enterica strain SA20025921 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 4110966 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 4111027 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 4111088 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 4111149 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 4111210 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 4111271 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 4111332 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 4111393 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 4111454 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 4111515 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 4111576 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 4111637 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 4111698 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 4111759 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 4111821 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 4111882 29 100.0 32 ............................. GAAATATTTGCATGGATAGTTGCGCTTTATAT 4111943 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 4112005 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 4112066 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 4112127 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 4112188 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 4112249 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 4112310 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 4112372 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 4112474 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 4112535 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 4112596 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 4112657 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 4112718 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 4112779 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 4112840 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 4112901 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 4112962 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 4113023 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 4113084 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 4113145 29 96.6 0 ............T................ | A [4113172] ========== ====== ====== ====== ============================= ========================================================================= ================== 36 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //