Array 1 355649-355390 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037968.1 Methanofollis formosanus strain ML15 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 355648 36 100.0 38 .................................... ATCCATTCTCCAGCCTTCAATAATTTATTCTGCTTGAT 355574 36 91.7 39 .C......A.A......................... TTTGCCTATGCTTAGTGTATCACGCTCCTTTGCATGATA 355499 36 100.0 38 .................................... ACAAGGATGCGGATATATTTCTTTACGGTTTGCCATGT 355425 36 91.7 0 ........A..A....................T... | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 95.8 39 GTTGCAGACTTGTTCCATGAAAAAAAGGATTGCTAC # Left flank : ATTGCTACTTCTCAAAGGGGGCTGGTCGAAAAGGTGCCGGGTTGTCCTGTCCTTTGGCACGGGGTTCAGGACACAGAACTGAGAGAATCAATCCTGGCGGCACGCAAGAATATCCTTTCACTGCCTCTACGAGGCAGTATAGAGTGAGTTAAACAGGCTTAATACCCTGACTCTCACTCTCAGGACAGAGATGTCAGATAAGATTTGGAGGTAAAGATTATGGCAACAGATTTGCTGGAAAACCAGGTTGGTAAGCCTGTTAAGGTGACGTATTCTGACGATGGAGAGATTAGGGTTCTCCGTGGCACCGTGGTGAGATGTTTTGGGTTTGTGGAGTTAGAACTCCCCGACGGACACCATTTCCTCGTGAACCTGGCGAAGATAGATCGTATTCTTGAAATCGACGAAGATCGGCTCAGCCGGCGGAGAGATCAACCCACGGTCATCGATTGAACGGCCCCCAGAACACATCCAATTTTTATTCGGAGCATTTGGATATG # Right flank : TCTCATGATCGACTTCGGGTATTTGCGAAGCGGTAAATATTGCAGAATTATTCCATGAGCATATCCCAGAACTCTCCTGGGGCGAACATCCCCTCGGACCGACGTGCTTCCTTCCAGAAATGCTCAACGCACTCCTCCACCGGCGGGCTCGCCGCCCCCCGCACCCCCACGGTGAGGATCGGAGGCGGCACTTGAGCAATGTTCTCCTGGTGCGCTGTCGCGATTGATAGGGATTCTCTGAACAATTTTCATCCCATGTGCTTGAGCCTCAGGTCCATGCCTGACTCTACAGAGCCCAAAAATTATATCTGGTCTGCTAACAGAGATGGATATGCAATCTATCTCCTTGCCCTTCGGGTAAGATTTCCCCACAGGGGGCGAGTTCTGGCTTGCTCTCGCCCTCACCGTGGGGATGAGCCGCAGGGGGTTCCACACAAAAAGGATCGCATCACCTCGTATTACTTTTGTCTTCACCTCTCAGCACCTCATTGCATGCTGGT # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGACTTGTTCCATGAAAAAAAGGATTGCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 357077-356141 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037968.1 Methanofollis formosanus strain ML15 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 357076 36 100.0 42 .................................... CGAGGTGGTCGGCGACCTTTCGTCCTTTCCTCCATCCGCACT 356998 36 100.0 36 .................................... TGTTCATCTAACTGTTCATAGATGTCAACGAGATAC 356926 36 100.0 37 .................................... TCTGAAAGAGTGCTGTTCTCATGCCTCTGCTGACATA 356853 36 100.0 39 .................................... GTTCCCGGAAGATGCCGAGTTGGTCTGGTGCTATGAGTG 356778 36 100.0 35 .................................... CCTGCGCCCACATCGAAAGCGAGTTCATAATACTT 356707 36 100.0 40 .................................... AGTTTCCTAAGTTCTGCGAGCGATTCACCTTCAAGACGGG 356631 36 94.4 36 ........C........C.................. TGCGACATGATATCACTTTTTTCAGAGAGATAGATA 356559 36 91.7 39 T.......C........C.................. TTCAAAAAGGTTCTCTTGCGTCATAATGCATCAAGATTT 356484 36 94.4 40 ........C........C.................. TCCGCTTCAGTCTTCTCTAAGAGTTTCCGGAGTCGTGCGA 356408 36 94.4 49 ........C........C.................. CATATCCAATGAGGGACGCGGCAAATTCGTTGTGCGATTCCGGTACCGT 356323 36 94.4 35 ........C........C.................. AGCCATTGTATTCACGTCCTAAAGTCCGAAAAAAG 356251 36 97.2 40 ........C........................... GGTATGTAGTAGTTCGAGATTTCAGCGTCTTCTCGACAGA 356175 35 94.4 0 ........C................-.......... | ========== ====== ====== ====== ==================================== ================================================= ================== 13 36 97.0 39 GTTGCAGAATTGTTCCATGAAAAAAAGGATTGCTAC # Left flank : TGTGGTGAGGTACCTGAATGAAGGGCGCCCCTACCACCCCTTCCGTTACCGGTGGCGTTGATGTTTGCGTGGGTGATCTACGACCTCACCGACGCCCGTATCAGGAGGAGGGTCGTCGAGACTTGCAAGGATTTCGGGCTTGTCAGGTTCCAGAGGAGTGTCTTCTTCGGGGAGGTGTCCTCGTCGGGGTTTGATCAGATTGCAGAGGCGATGAACGAGGTCACCAGACCGCGTGAGGGGGAAGTACGTACTGATACCGATAGTGTCCTTGTCCTCCCCCTCTGCGAGCGTTGTCTCTCGCGCAAAGTGGTGATCGGGAAACCCTTTGATGAGGAGAGGTTCAGGAAGAGACGTTACAGGATCATAGGATGATAGTCTCTGATCTCGGTGCGGGTGAGTATAGAAAGGCGAGGGCCGCAATATCCTCACCCGCTTTATATACGCGGGGGAGAAGGAGGGGTTTCGAAAGGTATTTGGGGATTCAGAGAGAATATGATACT # Right flank : TTCTCAAAGGGGGCTGGTCGAAAAGGTGCCGGGTTGTCCTGTCCTTTGGCACGGGGTTCAGGACACAGAACTGAGAGAATCAATCCTGGCGGCACGCAAGAATATCCTTTCACTGCCTCTACGAGGCAGTATAGAGTGAGTTAAACAGGCTTAATACCCTGACTCTCACTCTCAGGACAGAGATGTCAGATAAGATTTGGAGGTAAAGATTATGGCAACAGATTTGCTGGAAAACCAGGTTGGTAAGCCTGTTAAGGTGACGTATTCTGACGATGGAGAGATTAGGGTTCTCCGTGGCACCGTGGTGAGATGTTTTGGGTTTGTGGAGTTAGAACTCCCCGACGGACACCATTTCCTCGTGAACCTGGCGAAGATAGATCGTATTCTTGAAATCGACGAAGATCGGCTCAGCCGGCGGAGAGATCAACCCACGGTCATCGATTGAACGGCCCCCAGAACACATCCAATTTTTATTCGGAGCATTTGGATATGGTTGCAGA # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAATTGTTCCATGAAAAAAAGGATTGCTAC # Alternate repeat : GTTGCAGACTTGTTCCACGAAAAAAAGGATTGCTAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 3 2642551-2642910 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037968.1 Methanofollis formosanus strain ML15 chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ========================================== ================== 2642551 39 82.1 42 ...G.....T............TGCC.....T....... GCATAGCAACCACTGAAGGATGCCCCGCCGCCGCTGTTGCCT 2642632 39 79.5 42 ...G....ATG...........TGCC............. TTCTTGGAATCCCTGAATTCTGCCCCGCCGGCGGCGTATTGT 2642713 39 100.0 42 ....................................... GCATTGCACATGTCGAAGCCTGCCCCGCCGGCGGCGTATTGT 2642794 39 100.0 39 ....................................... GCATCGCAGAAGTAGAACCATGCCCCGCCGCAACAAATT 2642872 39 92.3 0 ......................TG....C.......... | ========== ====== ====== ====== ======================================= ========================================== ================== 5 39 90.8 42 GCGTTGTTGCCGGTGAAGGTGGCATTGGTGAGCGTGGCG # Left flank : TCTCGATGAGGGTGAAGTCGAGGGGTTCGTTCCCGGCGGGGGCGACGGTGATCGTCCGCTCACCGGTGAAGAACCCCTCCTTCTGCACCGAAATCGTGTGGTTCCCGACCGGGAGGTAGAAGGGGTTGTCCGCGGTGCGGGTGGTGTTCGTGCCGTTGACGAAGACGAAGGCGCCGCCGGAGGGCGTGGCGTTGATCTGCACGGTGCCGCCGCTGTGCATGAGGGGGAGGTGGTCGGTGCCGAGTTCCGTGTTCTGCGGATCGTCGCAGATGCCGTCGAAGTCGGCGTCCGCGCCCCGCTCGGAGATGTTCTGTCCAGGATCATTCAGCCAGAGGTTGCCGCCGAGGTACGGCCCGCCAGCGATGTTCGTGCCGGAGGTGCGGGCGGTGTTGAGGGCGGCGGTGGAATTATACGCATAGATGTTGGTGGGGTTGTCGAAGCGGCAGTTGGTGACGGTGGCGTCATCGCAACTTCTGAAGCATGCCCCGCCGCCGTCGGAT # Right flank : GTCATTGGAACTCCAGAAGCATGCCCCGCCGCCGTTGTGACCTGCGGAGTTGCCGGTGAACGCCGTCCCCTCCACCAGGAGGTCGGCGACATATTTGGCATAGAGCGCACCGCCGCGTGTATTCCTCCCGATCACTGTGTTCCCGGCAAAGGTGCAGTTCGTTATGGTGAGGCGCTTCAGGTGGTTTTCTAAAGACCCGGTGGCGTTGATCCCGGCGCCGAGGCTGGAATCATAGTTCAGGTGGTTCCCGGAGATGTTGAGGCCGCGGAACGTCGCGTTGTCTGCGGTGACGGTGAACGCCGACGTGCCGGAGGTGCTGGTGATGAGGGGTTGCACCGGCGATCCTTCCCACCGTTTCATGGTGACGTTCGGTGTGTCGATGACGATCCCGCCCTCGTACGTATGCCCGGCCGCGCCCCAGATGTGGACGGTGTCGCCCGCACCGAGGTCGGTGATATTCAGGAGACCGGTGACGTTCCCGGTGCCCGGCACCGGAGAGA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTGTTGCCGGTGAAGGTGGCATTGGTGAGCGTGGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [35-35] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 2706382-2714829 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037968.1 Methanofollis formosanus strain ML15 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2706382 29 100.0 32 ............................. ATCGTGGTGCCCCACTGGTGCAATGACTTTGA 2706443 29 100.0 32 ............................. ATCTCGAGCGGGCATCTATGTGACTGAGGGAT 2706504 29 100.0 32 ............................. GCGCCGCCCAGAGATACCCCGAACTGCACGAT 2706565 29 100.0 32 ............................. CTCGTCGGCGAGGCTGCGGACGAGATCGAGCC 2706626 29 100.0 32 ............................. ACATTGAGGATGGCGTTCATGATCGTCGCTAC 2706687 29 100.0 32 ............................. GTCAATAGCGATCACGTAGGGCTGTTCGGGGA 2706748 29 100.0 32 ............................. CCTAACACCATCACCGTATCATCTGAGAAGGT 2706809 29 100.0 32 ............................. TAAAACCTGTTCCACCACCAGATTTATGAACA 2706870 29 100.0 32 ............................. AAATGGTGTCAAAAACAATCAACCGCATCATA 2706931 29 100.0 32 ............................. AAACAGAAATTATGGAGGAGAAAAAGGAATCG 2706992 29 100.0 32 ............................. TTTAAATAATGCTTCTTCAAATAACGGATGTA 2707053 29 100.0 32 ............................. GCGTTGATCACCTCTCGGAGTAGTTGTTCATT 2707114 29 100.0 32 ............................. CAACTCATCATACTGGTCAGGACGGCGATTGA 2707175 29 100.0 32 ............................. CCAGCACCGCATCCGCGAGGTCCCGGTCCTCG 2707236 29 100.0 32 ............................. AAAAAACCATGTTAGGACAAAACGACGAACCT 2707297 29 100.0 32 ............................. GCAAACAAGTTTGTTCAATTAATAAAGATAGT 2707358 29 100.0 32 ............................. CCTTCTTCCCAAATATTCTATTTTCGATGAAA 2707419 29 100.0 32 ............................. GCCATGGGCGCGCTCTCGGTGAAGGCGGCGGG 2707480 29 100.0 32 ............................. CCGTATCGGATACATGACCCCAGCACCTACGG 2707541 29 100.0 32 ............................. ATGATCGGGGCCTGCCTGAATTCGCGTGATCG 2707602 29 100.0 32 ............................. AGGCGTGCATATGTGCAACCTCTTGCGCGGCA 2707663 29 100.0 32 ............................. GATACGGACGAGCGGGGGATTATGCGAGGAAA 2707724 29 100.0 32 ............................. TATTCGGGGATGGAATTGTGCTGTTAGTGTTA 2707785 29 100.0 32 ............................. AGTGGTAGGCCATAATCGTGCAGTCCTATGCA 2707846 29 100.0 32 ............................. GTATACCGTCTCCTTCTGTTCCTCTCCCTCTA 2707907 29 100.0 32 ............................. TCGACGGCACGAACATCCGAGTCTCGTACAGC 2707968 29 100.0 32 ............................. AAAAATTGTATCGATGCGATGATTGTAACGAC 2708029 29 100.0 32 ............................. TATGTAGATAATATTAGAAGAAAACTGTAATT 2708090 29 100.0 32 ............................. AATTGGTCCAAAGCAACTCCACTTGTTCTTTG 2708151 29 96.6 32 ............................T ATTGAGGTCAGACCAAAATGAATCTCCACGAC 2708212 29 100.0 32 ............................. TCTCTATTTGGTATCCTTTTCTTCGAGAAAAG 2708273 29 100.0 32 ............................. ATCGTGGAGGGCGGCGACTGCGTCCCCTGCAT 2708334 29 100.0 32 ............................. CCTGCAAGAGAGACCAGGGAGAGAGATCTGAG 2708395 29 100.0 32 ............................. GCGAGCATCGAGAAGTTGAGATAGATCTCGCC 2708456 29 100.0 32 ............................. ATACCCGTCATGCTCGTAGTGCCAGTCCACAT 2708517 29 100.0 32 ............................. ACCCCCCGCGCCACGCCCCCTCGGCCGAGGTC 2708578 29 96.6 32 ............................T GATACGAGGTCCTCCCCCCACCGCATCGCCAT 2708639 29 100.0 32 ............................. CCGTCCTTTTCGAGTTGGGTGATTTGCCGGAT 2708700 29 100.0 32 ............................. GCGCCATCCAGGCGCTCTATGCCCCGGCCCCT 2708761 29 100.0 32 ............................. ATCTGCCTTGCATCCCGCGTAGATCTCGGAAA 2708822 29 100.0 32 ............................. AACTGCTCATCCGCCGCCCGTGCGAAACAGAA 2708883 29 100.0 32 ............................. CGAAACGCCACACCATCGGACTCTGGTATCAG 2708944 29 100.0 32 ............................. GCAACGGCCTGTTCGGTGCCGATAGGGGTGGG 2709005 29 100.0 32 ............................. ATGTTCGACCGCCCTCAGGAGGTCACCCACGA 2709066 29 100.0 32 ............................. CGGGCGTCTCATGTCCCCCTGGAAGAAGAACA 2709127 29 100.0 32 ............................. CCGGCAGCATCGCGGGTTCGGCCCTATGGGAG 2709188 29 100.0 32 ............................. ACGTGGGGATAAAACCGGGTGCGGTCCGGAAG 2709249 29 100.0 32 ............................. AGTTTCGCGTCGATCTCGACCCATGCTGCACT 2709310 29 100.0 32 ............................. ATCGCCGAGTTTCAGGAGAGTGCCGGGACTGG 2709371 29 100.0 32 ............................. GCCCGTCTGGCCGGGCAAAACTCGACGCACCT 2709432 29 100.0 32 ............................. AGCCGGGCCGCCAGGGTTGGATCGTCTGGTGC 2709493 29 100.0 32 ............................. CACAGGGGGGACTGAGGCGTGGGATACGGTGA 2709554 29 100.0 32 ............................. AAAGGGGGGCTTGTCGTGGCTCTGCTACCTGT 2709615 29 100.0 32 ............................. AGGAATGAGGTTATTTGGGAGGGGCAACCCAA 2709676 29 100.0 32 ............................. GATAGCAACAACCTGTCTGAGAACCAGTTTCT 2709737 29 100.0 32 ............................. TGATCGGATGAACAACCAGGAAAAACACACGC 2709798 29 100.0 32 ............................. AGGTTGCGGGGCATCGCTCACCTCAGGCCGAA 2709859 29 100.0 32 ............................. AGGGCGAGATAACCTGGGAAGTCGAGGAGAAG 2709920 29 100.0 32 ............................. GTCCCGTTCGTCGATTCCGGAGGAGAGACACC 2709981 29 100.0 32 ............................. ACGCACTCGGACTCACCGCCGACGAGGTCGCC 2710042 29 100.0 32 ............................. ACTCTCCCGAGAGCCTGTAGAGCCTGCACATA 2710103 29 100.0 32 ............................. GCACTGGGAGGCCCCGTTCGACCGCGGCCGCG 2710164 29 100.0 32 ............................. CGCCACGAGGCCCAGAACGCCGGAAGCATCGA 2710225 29 100.0 32 ............................. CGCGGACGGTCCAGAAGAGTTCAGCGAACCCA 2710286 29 100.0 32 ............................. CGCGGACGGTCCAGAAGAGTTCAGCGAACCCA 2710347 29 100.0 32 ............................. GCGGCGGTGCAAAACCTCGACGAGTGGCGCAC 2710408 29 100.0 32 ............................. GCACGCGACCGGGAGATCAGGGCGGCGGAGCA 2710469 29 100.0 32 ............................. TCATGGGGAGATTTTAGCGGGGGCGGTGGAAA 2710530 29 100.0 32 ............................. GTTCAATAAAAAAAGGCATGTGAGGTCACCCC 2710591 29 100.0 32 ............................. AGCGCCCCCGAGGGCGCCACGTTCTGAGCTTC 2710652 29 100.0 32 ............................. AGGCGCTGCCACAGTGTCGGCGCCGCGTCGGG 2710713 29 100.0 32 ............................. ATCCCCCTCGATGATCTCATAGTAGGTGCTCA 2710774 29 100.0 32 ............................. GCGACGACCCTCGACGGCAAGCCCGACGCGGC 2710835 29 100.0 32 ............................. GCGACTGCTGCTTGCTCTTCAGGCGTCGGATG 2710896 29 100.0 32 ............................. AGGATGACGGTGACCGGACCAAAGTAGTGGAC 2710957 29 96.6 32 ............................T ACGCCTCGAACTCGACGATGCTGAAGAACTGC 2711018 29 100.0 32 ............................. TGTTCCATACCATAGCGCACCACCCTATTTCG 2711079 29 100.0 32 ............................. GCGCTTCTGAAGGTCTTCGTTTCCCATAGCAG 2711140 29 100.0 32 ............................. AGATGGCAGAGTCTCTCGGCTCGAAACTCCTC 2711201 29 100.0 32 ............................. TCCTGTTTGCCGACGGGCGGCGGGTCGAGGGT 2711262 29 100.0 32 ............................. GGGAAGCACAGATTGTCGAAAAGAAATGATTT 2711323 29 100.0 32 ............................. TCCACCGTGGCCTGGCCGTCTGCCTGGCGGTC 2711384 29 100.0 32 ............................. GCGAGGGCGATCTCCTCTGCCTCCTCAGGGGA 2711445 29 100.0 32 ............................. CGGCTCGATCTCGTACGTGGCAGATCCCTACT 2711506 29 100.0 32 ............................. GTAGTCCTCCGTCGTCGCGCTGCACCGGGCCG 2711567 29 100.0 32 ............................. AACTGGCTCGCGATCATCTCCCCGAACCCCTC 2711628 29 100.0 32 ............................. ATCCGGGGCGCGGCCGGCACCTATTTCCGGCG 2711689 29 100.0 32 ............................. TACGCCTGCGTCTGCCATCTCAGATCACCCCC 2711750 29 100.0 32 ............................. TGGCCGGGCCGCTCGCACGACCGGATCTCCAG 2711811 29 100.0 32 ............................. TCTGCGGAGGGATGGGGGGTTGGCGGGAGGGG 2711872 29 100.0 32 ............................. CCCTCCGAGCGTGATATACTCTTTATTTTTAG 2711933 29 100.0 32 ............................. ACGCAGCCGCCGCAATCCAGGTGCTCGACGCG 2711994 29 100.0 32 ............................. AACAGAGAAGGTGAAGAAACGTGACAGAAACA 2712055 29 100.0 32 ............................. CGGTCGAAGCGGCGGATCGTCTCCCTCGACGC 2712116 29 100.0 32 ............................. CTCCTGGAGGAACGCCGGACCCCACTCGGCCC 2712177 29 100.0 32 ............................. TATTCGGCCTCTGAGAGGCAGTATCCCACATT 2712238 29 100.0 32 ............................. GCCTGCCTCAGTGAGGACGCCGGCGAGGTCGC 2712299 29 100.0 32 ............................. AGAGATCGGTATTTCTGGGGCGAGACGACGAT 2712360 29 100.0 32 ............................. GCGCTGAGCGGCAGTCTGACTCTCCCGGATCT 2712421 29 100.0 32 ............................. ACTGCTCACTTCACGCTCTTTTTCCAGACCTA 2712482 29 100.0 32 ............................. AGGCATAAAATGTCAGAAACAGGTTTGAACGG 2712543 29 100.0 32 ............................. ATGTTCGTTCCCGGCACCGGAATCCCGACCGT 2712604 29 100.0 32 ............................. CCTCGGGCGGGCTCAGTCGTCGGAGGAGGGCT 2712665 29 100.0 32 ............................. GTGCTCTGTCTGGATTGTTTCCGCGAGTGGTG 2712726 29 100.0 32 ............................. ACGTGAGCGGGGCCGGATACACTGGCAAAAAA 2712787 29 100.0 32 ............................. CGGTGCTCTGGGCGAAGGGATACCGGCAGTGG 2712848 29 100.0 32 ............................. AGAGACGCGGTACTCGACTTCATGGCCGGCGC 2712909 29 100.0 32 ............................. ATACGGCTGTATCTTATCCTTCGTGTCAACGG 2712970 29 100.0 32 ............................. ATGATGCACCCGGGCGACACCTCGCTCGGGGC 2713031 29 100.0 32 ............................. ATCCTCGCCTTTTTCTATTGCACCGGCGACAG 2713092 29 100.0 33 ............................. GGTCCTCATCGAAGGCGAGATCGTTCCCGACCT 2713154 29 100.0 32 ............................. GCGTCGCACCTCCTGAGGATCTCAAGGTCCCC 2713215 29 100.0 32 ............................. CACGCCGCCCTGATGCAGGACCACCCGACGCT 2713276 29 100.0 32 ............................. ACCATCGTCACCCTCCAGGACGGCGTCAGAAA 2713337 29 100.0 32 ............................. ACGGGGGCCGGGCCCTATACCCTCGAGTCCGA 2713398 29 100.0 32 ............................. GAAACGTCGTACACGGGTTGCGACCCCATAGG 2713459 29 100.0 32 ............................. ATAGTGGTCTATCGCATTCTCTGGAATCGAAT 2713520 29 100.0 32 ............................. GAATAAGTTCGACACCAGCACCAAACACAGCA 2713581 29 100.0 32 ............................. AGGACCGCACCACCACAAAAAAACCTCGATGT 2713642 29 100.0 32 ............................. TAGTATAGGAGGTAGCGAATGAGCCACATAAC 2713703 29 100.0 32 ............................. ATCCTGGATTTGCACTGTCTCCAGCGAATCGC 2713764 29 100.0 32 ............................. ATCCTCTACCACGAGGTTCGGGAACGGTTCGG 2713825 29 100.0 32 ............................. CGGTGCCGGTGCTGTGATGGAGAACGATGTCC 2713886 29 100.0 32 ............................. GCGGCCACTGCACACTGCCGTTCTGCCCGCAA 2713947 29 100.0 32 ............................. AACGCGTCGAACTGGTTTGGCAGGATGACGAC 2714008 29 96.6 32 ............................T GAGGAGCGCAACCTGCGCCTCTGAAGGATACA 2714069 29 100.0 32 ............................. ATAGCGACTGAGAAATCAGACCTCAGCCACCG 2714130 29 100.0 32 ............................. TATAGAATAATATATGGAACATATAGTGAGTG 2714191 29 100.0 32 ............................. ATCCTTTCTTATCGTGGTCCGGTCGCCCTGGT 2714252 29 96.6 32 ............................A TTGTGACTGGCAGACGATGTAAGCCATCGTCC 2714313 29 96.6 32 ............................A TTGTGACTGGCAGACGATGTAAGCCATCGTCC 2714374 29 100.0 32 ............................. CCTTCGACGGATATCAGATTGCCCCGGTATCT 2714435 29 100.0 32 ............................. ACAGTTGGGACACTGCCGCGCCTCGACCCTGG 2714496 29 96.6 32 ............................T TGAGGATCGGGTTGCCGTCCGCGTCGGTCATC 2714557 29 100.0 32 ............................. GTCTGCGGATCTGCAACGAGGAGCAGATGGCA 2714618 29 100.0 32 ............................. CTGGCAGAGTGTGCAGACGGGGGAGTAGACCA 2714679 29 100.0 32 ............................. GTCGCATGGGCTGCCGACAAGCATGGAGCCGA 2714740 29 100.0 32 ............................. GCCCTGCGGGATCACGACGTCGCCATAACTCT 2714801 29 89.7 0 ....................A.C...T.. | ========== ====== ====== ====== ============================= ================================= ================== 139 29 99.8 32 GAGTTCCCCACACGCGTGGGGATGAACCG # Left flank : TGCTCGACGCAGGGGGGTTGGATGTGCCGGAACCGCCTGAGGGGAGTTTGCCCCCGGCTATTCCTGAGGAGGATATATGGGGTCCCTGATGGTGGTTGCAACTGAGAACATCCCCCACCGCCTCCGGGGGAGACTGGCTCTCTGGCTGATCGAGGTGCGTTCTGGAGTTTATGTGGGCAATTATTCGGTGAAGGTGCGGGAGATGATCTGGGATCAGGTGGCAATGGGGGTCGAGGAGGGGAATGCGGTGATGGTCTGGGCCGATCAGGGTGATGCCGGATATAATTTCAGGACGATTGGGCAGAACCGCCGTATTCCGAAAGAGATGGACGGCGTAAAGTTGATTTCCTTCCTGCCCGATATCTCATGATGATGGGTACCGGTCTCTTTTCCACCCTCACTCGCGCCAATTGGTTGGGAGTGCTCGCATCACGAGGGTGCGGGGCAACTCCCCGTGAAACATAGAAAGAAGTTTCTTTCTGAGGGAGATAAGTTAGAGA # Right flank : GGATGATGCTGACTCCCCCACACACCGTTCTCCAATCAGAACTATCATAAAATACCATAAACAATATGATATTGTCTGTTCTTTGGTAGGCCGATGATGTTCCCCGATCTTTCGGGGTTGAACCATAGTGAAATTACAGATCCGGCCGCGTGACAGTATTTTTTCCCCACCATGTGGGGATCACACTCCCTTTTTCCATTCCCCCGCGTCCACCAGTGCAAAAAAACATCGGGAACACGCCCGTGCATCCTCCAGCGCCCGGTGCGCCCCTTCATAGGGAGAGCCGAAGAGGGCCAGATGGAGTTCTGAAAGCGTCGGCCATTTATACCCGCCCTGCCGCCTGATGCCGCAGTACCTCGCCGAACCCCTCATCGTACACCAGCCGCGGAGCGGTTCCAACGGGTCGGCACGCCCGGTCCGTTCGCATTCTCCGGCGATGACTCGCCGGTCATAGGCAAGGTTGTGGGCGACGACCCAATCGGCCGATTCCGCTGCATCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACAAGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //