Array 1 1253030-1254940 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIF01000003.1 Veillonella atypica strain NCTC11830, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================== ================== 1253030 34 94.1 43 ....T........T.................... AGGTTACTATCTGGATTCTGAAACTGCTGAATACGCTGAATAG 1253107 34 100.0 45 .................................. GCGGAACAAGTTGCAGAAATTAAAGAGATTTTATTAGATGAGTTG 1253186 34 100.0 45 .................................. AAAAATGAATAACCACAATTTAATAATGAATGTTAAGGCGTTACG 1253265 34 100.0 44 .................................. GCTATTACGGGGGAATTATGATGATTGGATTTATGCAAGCGGCG 1253343 34 100.0 45 .................................. ATGTCAAAAGAAAATAAAACAGTCGTATTATACGATAGAAATAAG 1253422 34 100.0 44 .................................. CAGACCACATTTATATTAACGGTGAAAAATATGATTTCGCCGGG 1253500 34 100.0 43 .................................. TGCAGGGTATCAATAAACGATACCAACTATTATTCACACCGCG 1253577 34 97.1 45 ...............T.................. ACTAAATTCTTCGGTGAAGCGAAACACACTTCCAATAAATATTTG 1253656 34 100.0 46 .................................. TGGTGAGCGTGGTGGTAAAAGATTAATTCATTCGCGGTTATTTGAG 1253736 34 100.0 43 .................................. GGGTTATAAAAATGTTTGTGAATATTGTTCAGATGTTTTGGAG 1253813 34 100.0 45 .................................. TTAAACGAAAGGATTTAAAACAATGACATTACATATAGACACAAG 1253892 34 100.0 44 .................................. TAAACCATCTTTCAGATGTGAAAATTGGTTATTCTTTTAGTAGG 1253970 34 100.0 45 .................................. CCACTTGCAAACCGTCAATAATTGCACCCTTTAACGTGCTATGGA 1254049 34 100.0 44 .................................. CCCCGCTACGGCAACGCTTGTTTTGATTATCGCTTCCGTAAGTA 1254127 34 100.0 45 .................................. AAGGAATTAAATTATTATGACACGTGCGGAACAATTGCAAGACAA 1254206 34 100.0 43 .................................. TGAACAATATACTGACTATGCAAGCAACCACGCCCACGACTAA 1254283 34 100.0 45 .................................. AAGTAAAAAACTTGGTTTTTAATAATCTTCTTAAAAGCACACTAA 1254362 34 100.0 44 .................................. ATGAAAATGGTGATGAATATTTACGTATCGTATATAACAAAGAA 1254440 34 100.0 45 .................................. ATCCACGCAATATCTTTGTATTTGGTCGTGATGGTGTAGCACATA 1254519 34 100.0 44 .................................. GCGACATCTACGAAAGCGACAATATCGAAGATTTTAAAATCATA 1254597 34 100.0 44 .................................. ATAAAAGAGGGTAAATAATGGAATATCTAAATATCATACAAAAA 1254675 34 100.0 43 .................................. TAACGATAAGGCTAATTCTGAAAAAGCATTGTTAAAAGACCAA 1254752 34 100.0 44 .................................. TCAATGCATACCATCTTATTAGAACACGAATATTTTAAGAAAGA 1254830 34 100.0 43 .................................. TAATGAAAACTAAAGACAATATACAAAAGGTTATAAATTTAAA 1254907 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ============================================== ================== 25 34 99.6 44 TTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Left flank : GAGATTTTATGGTGCGTCTATCATAGCCTAATTCACGACCTAGTAAACTATAATTAGGTTTCAAATTGCAAACCTCCAGAATGTCCCTTAATAATGGTAAGTCTAATAATGATGTTACAGTAAATGAACTGTTAATAGCGTATACGTATTGCATGTTGTTATCACCTCAACTATAGTATCGGTGATACAATTAAAATTGTACATTCTTATATCATCATTTTTGTACATTCTTAGAGTATCATTTACATAAAATATTTAACAGAATAAATCTAGCAACATAACAAAAGTAGCATTACTAACGTATAGACACAGATGGCATATGCCAATGGTCTATATTACTTATAGTAATGCTACTTTTTTATTGTAAATTACATCATAATCGAAACCTAGTCAAAGTTCAGGAGATATATAGAACAAATTTTGGAAAATGATATTTCAGGAATCCTTATATTCAAATAAAGCCTTATAGTAAGCCTAATAATTTTAACAAAGATAAATAG # Right flank : CCCTGTATCTGAAACAATAGATATTACCTAGTTCAAAATCACTATTAACGGCGGAGATCATAAATGAGCCTAAAACAGCACTTTAGCGTGCTAAAATAACACCTATAAATCGCGCCACTATCACAACGGCGGAGATTGTATTTCACAAGGTTATAATCTAGATATATTATAGCATAAAAAAACAAAAAAAATACAATAGTAGAATCACCAATGCCAGTACATTAGATATATGCAGCTAATCAAACAAAGATAATTCTACTATTGGTTATTAAATAATATTTCTAATCAATGCATTACAATATGATACAATCTTGCTCTTTTCGTTCGCCAATTCCCCATGTATAAATATTAATAATATCATCAAGTATATATACTCGTAGAGAATCCTCTACTGGATTAATAATTCGACTTGCCCGACGCATCATTACATCGTATTGTTTTCTATTGAGCAATGCCTCAAATGCAGATTTCTGAACACGTACGCCATATCGTTCTAAACA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //