Array 1 69905-69671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUS010000040.1 Streptococcus thermophilus strain Racle124 Contig_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 69904 35 91.7 30 -.....AC............................ AAAAAAGCCTTGAAGCTGGTAGCAAGAGAA CT [69896] 69837 36 100.0 29 .................................... TCGTGGTCGCTGGTCGCTGTATTGACGAT 69772 36 100.0 30 .................................... GAAAGAACACAAGGATATCTATGAGAGAGA 69706 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TGTGGATGAACTCCACTCACGTGGCTTCAAGGTAGGTTTAGTTTCTGGTGGTTTCCATGAGACAGTTGATAGACTGGCAAAAGAGGCAGGTATTGATTATGTGAAGGCCAATCACCTTGAGGTGATCGATGGTTTCTTAACTGGAAAGGTTTATGGTGTGATTGTTACCAAAGATGTCAAGGTAGCTAAGCTTAAAGATTGGGCAGCGGAAAATGGACTTAAACTCTCTCAAACCATTGCTATGGGTGATGGAGCCAATGATTTGCCTATGATTAAGACAGCCGGCATAGGCATCGCCTTTTGTGCCAAACCAATTGTCCGTGCACAAGCTCCTTATCAGATCACAGAACCAGATTTGTATAAGGTCATTGAGATCTTGGATGAGGTGGAAAAATAGTAGAGATAAAAGAGTCCTTTGGATGATTCCAAGGGACTCTTTGTGTATAAAAAAAACACCGAATCGGTGCCACCTTTTCAAGTTGAATACGGACTAAGCCTTA # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTGATGTTATGACGAAATCGTCAGTATTTTTTGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 10492-11716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUS010000014.1 Streptococcus thermophilus strain Racle124 Contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 10492 36 100.0 30 .................................... TAGCGCTGTCCAAACTAAGGTGCTATTGGC 10558 36 100.0 31 .................................... CATTGATGAGTATTATTGATAAACTTCTCGA 10625 36 100.0 30 .................................... AATCAACGGCTTGACAAACATCAAGAAGAA 10691 36 100.0 30 .................................... ACTTTTGCCATGTATTATTTCCTCCTTTCC 10757 36 100.0 30 .................................... ATATTCTTGCTTGGTTATCAGGATGGATTG 10823 36 100.0 30 .................................... AGACGTGGTGACTCATGGAATCAACCAACA 10889 36 100.0 30 .................................... TTCATAGTTCCGTCTCGGTTTAATTCTGTA 10955 36 100.0 30 .................................... CTGAGTGTTTAAATATTGCATATGAAGAGA 11021 36 100.0 30 .................................... CGATACAGACCGTTTTAGAACAACACACAC 11087 36 100.0 30 .................................... GCATCCCTTGTTTCAATTTCTCCAATTTCA 11153 36 100.0 30 .................................... TTCTTATCTCCTTTTTTAGTCCATTCCATC 11219 36 100.0 30 .................................... AATTGGTGGATAAAATTGGTAAAGTTGTCT 11285 36 100.0 30 .................................... AGATGGGAATGTCTCTGGATGACCTTGTAA 11351 36 100.0 30 .................................... TCTACGAGGATGAAAAAGGTGAGCTTAAAA 11417 36 100.0 30 .................................... TCTTGACTAATACTTCAGGCTTTACAGCTC 11483 36 100.0 30 .................................... TCAAAGTGCCATCTCGGTTTAATTCGGTAC 11549 36 100.0 30 .................................... ACTGCGAGAGCAGAAATTGGCAATTTTACT 11615 36 100.0 30 .................................... CGGAACTGTAGAAAGTACAGGTCAAGACCT 11681 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : GTGTTTACTGTTAGAATGACTAACGTGTTAGTTTGGCTCTTTGTCAACTGTAGTGGGTGACGAAAAGCTAACATCTAGAGAGGACCGGATAGGTCCTTTTTTTATGTATGTTCAGTGTGATGAAGACACGCTTCTTAAAGTTGATAAAGTTTCTAAAACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //