Array 1 1766-1553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCG01000063.1 Streptomyces sp. NRRL WC-3795 contig63.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1765 29 100.0 32 ............................. ACCGACCCGGGCGCCGTGGGCGAGAGGGTGCG 1704 29 100.0 32 ............................. GGCGCCGCCAAGTACAGGATCGCCAAGTTCCC 1643 29 100.0 32 ............................. GTGCCGTTCGGGTCGAACGAGCCGAGGATGGA 1582 29 89.7 0 .....................T..C...G | A [1561] ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : AGGCGTCAACTACGACGGCCCAGAGGACTACGGAGACGAGCTCTGGTGACCGTCATCGTCCTGACCAACTGCCCAGCCGGCCTACGCGGCTTCCTCACCCGCTGGCTACTGGAGATCTCCGCCGGCGTGTTCGTGGGCAACCCCTCCGCCCGGGTCCGCGACGCCCTCTGGGACGAAGTCCGACAGTACGCGGACCAGGGCCGTGCTCTGCTGGCCCACACGACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCGACCGACCACGAAGGCATCACCCTGATCCACCGCCCCGACCCGAACGCACCCACCGCCACCCCAACTCCCCGGAACGGTCCGCCATCCGGCTGGAGCAGAGCCTCCAAACGCCGACGCTTCGGCAGAGGCTGATGCAAGCCGAGCCACGCATATCCCATTTGCCGGAATCGCAGCAAGTACTCGAGAACGGCCTGCAGCGCCAGTAAAGCCGCAGGTCACCCAGT # Right flank : CGCTGATCGGCTCACCCCGGACGGCGAGGCCGTTGTCCCCCCCAACCGCGGGGTAGCTCTGTCAGCCCCGGCTCGTACGGTGATCGCGAGGTCGTCCCCGTGCCGGGGGGCAGGGTCCCTGGAGCACCTGATCAGACGGACGCTGGGCTGGTTGTCCCCGCACTGCGGTGGTAGCTCCTGTTCGACGGTCCGCTCGGGTGGGCACACCAGGTTGTCCCCTGGGAGCCATGCCGATGGCCATTACGACAGCTCCCAAGGGATGTAGCCGAGGTTCAGGTGCCCGAGTCCAGCCAAGCGCTGCACCTGATCAACCAGGCGCACGGTGAACAGGCGCTTGGCCGACACCTCGCCGTACCGGTCGACGTGGTCGAACACCACCTGCGGGTCCTTCATCGCGCGCACGCGCCAGTCACGGACCTGATTGCGGGTCAGGTTCTCAAGGATGAGGCCCGGACCCTGGTCGACGACGGTCATGTCAGGCGCGGCGACCGGACGCAACC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11500-11650 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOCG01000063.1 Streptomyces sp. NRRL WC-3795 contig63.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11500 29 100.0 32 ............................. GGGTGTCACAGGACATGGCGCCGTTCGAGGAG 11561 29 100.0 32 ............................. CATGCCGACGTAGCCGATCCTGTGCCGGATGC 11622 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CTGACACGCGAACGCCGGGGTGGCCTTGCCGACGTCGTGCACACCGGCAAGCCACACTGCAAGGGCGCGTGCGTCCAGTTCCCCCTGCGGCAATGCCTCGGCGATCAGCTTCCGCACCCCCACGGGCAGCCACCGGTCCCACAACAGGCCGGCTACTGCGGCACTGTCCTCCATATGCCGCCACAACGGCAGCCAGCCATCGGTGTCATAGTCGTGTTTGGCCCACACCGACCTGGCCGGCTCCCCAAGCCGACACAGCAGGCCGGAACAGGCGTTCCCCCCATCCCTCATGAGGGATTAATACAGGGAAAACCCGGTCTCACACGCCGAAATGAGAAAACAGAAGGATTCACAGGAAGACGGCATCCTCAAGTCGTATGATCATCGGCCGATCCTGGAAGTGCCTACGGATCAATTGTTACCTAGTGTCCCACTTGCCGGAATCTATGAAAGTCACGGAAAGTACACCTCTGCGGCCATAAACTCGCAGGTCAAGCAGT # Right flank : TGGCGCTGCTGCTCGGTAATGTCGACGGCTTCCTCTAGCTCCTCCCCGGACGCCATGGTCGCCAAGTTCGGATGAACCTCGTTCACGACGAAGGCCGCCGCCCTGTGCTGGGTGATGGCCTTGAGTCACAGTCATCGCGCAAGCGCAGCGCAACAGCGAAGCCCTTCGAGGTTCTACAGGCGGGACGCCGGTGTACTCCCGACGTCCCTGGCCCCCTCCCCGTTTTACAGGTCCAGCCACGCCAAGAGGACCTTGGCGAGTACAGCCGCCGTCACACTTGAGCTGACCTGAACGAGACCACGCAGCAGGTGGGCACGCATCTTCTTACGGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //