Array 1 2130-2639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPGB010000054.1 Bacteroides cellulosilyticus strain 1001713B170221_170320_C9 NODE_172_length_2639_cov_34.2404, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 2130 47 83.0 30 .....A.....T......C..T....T..........TA.......C CTGTTGGCGTAGATACGAATATGCTCGATT C [2144] 2208 47 95.7 31 ..........AT................................... GCCCGCTCCCCCCGCCTTGCCGCCACGACCG 2286 47 100.0 30 ............................................... GCAAAGGTATCTTGCAGCCATGGCAGGAAA 2363 47 100.0 30 ............................................... GAAGGTGGTAAAATAGATGTCCGTCGTGCC 2440 47 100.0 29 ............................................... CATTTTAATGTTATGAGAAACAACTTATG 2516 47 100.0 30 ............................................... GGAACTGTTGATATTCAGCCTGTACATCTT 2593 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 7 47 97.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGAAACAGT # Left flank : CCGCCTCAATATCTTCGAATATACTTTCGACGAGCATGATGAGACGGTAGCTTATTCTCTGTCTATTCCTTTCGTCTCTACGTTTGTTTTTGCAGCGGTGATGAAGCACCAGGAGGCTCCGGGTACTACATTCAAGAAGCACATGGCTATTGCCAAGGGTTTGCTGAGTGAAGATGATTACTTACTTCAGGAAATTCTCTTTAATCCGCGCACTCCCTCGCAAGTGGAAAATATTCGTCTGGAGCTGAAGAATTTACTGGAAATTATCAGTACGAAGGATGCGGAAGGGATGAAGCAGTATCTGACGAAGATTAGGGAGAAGATAAAATAGATAGGTGGGATTAAGGGATTGGAGAGAGAAGAGGGTACGGAAAAGGAAGTGGGGCTTCTCTCTTCAATTTGTTAATAAAGAGAGGGGATGATATTTAGGATTGGGGAGCATACTTATTTCTAAAATTATTAAAAATAGTCAAATATAGGCAGGAATGAAATAAAATTCT # Right flank : | # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGAAACAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.10,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1-490 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPGB010000305.1 Bacteroides cellulosilyticus strain 1001713B170221_170320_C9 NODE_851_length_12889_cov_29.4344, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1 32 100.0 33 ................................ TTTTGAAAAGTGAAGCAAACAACTTGCAAAGAT 66 32 100.0 33 ................................ CAAAGTAAGTAAGACGTATAGGCAGGTATCTAT 131 32 100.0 34 ................................ CCCAGTTTGCAGTCGTTATATTCGCTGTTCCATT 197 32 100.0 34 ................................ GGAAGAACCTTCCATCTTTAGTCATAACAACATA 263 32 100.0 34 ................................ CGGTGAAGAGATGGTGCAGGTTCCTTTGCAAACT 329 32 96.9 34 ............G................... AAAACAGAAAAAGGACTATGCCCGTACACTCTAC 395 32 96.9 32 ............G................... AAAAAAGAATTGGAAGTAGCCATAGCATCCGG 459 32 93.8 0 ............G..............A.... | ========== ====== ====== ====== ================================ ================================== ================== 8 32 98.4 34 GTCACTCCTTGTACAGGAGTGTGGATTGAAAC # Left flank : | # Right flank : CAAGGATATCAGAAAGACCAACTTATATTATTAACATCCTCTTTATACGAGGGTGTGGATTGCAATGATCTTTACATCCAAAACGGTGATATCCGTTCACTTTTCTGTCTCTTTATCCTAATGACGTTGCAAAATTATAGATTTTTTTTTTCACGTTACTGTTTGAACGTCTTTTTTGATGCATACTGTCTCCATTGAGTTCAAAACGCACACTTGTCTACCGGATTGCTTTTAAGCAATTCAAGCCCTTGCAGGGCACTTTCGGCGGTGAGGGTTTGGTCTCTTTTGCTGAAGATACGGTAAATGAGTTCCTGTAAGTCCTTGTTGTCGTCAATGAACAAGATACATGGTTTCTCTTCCTGTGCCGATATGTCTGTTTCTCTGTCTTGAACAGGCAAGGGAGAGGACTCTACTATTTCCTGTTCACTATATACCTCTCTGTCAATTGGTTTTTCTACTGTAAACAGTGATCCTTTACCCAGTTCGCTGCTTACCTTGAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTTGTACAGGAGTGTGGATTGAAAC # Alternate repeat : GTCACTCCTTGTGCAGGAGTGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 1615-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPGB010000345.1 Bacteroides cellulosilyticus strain 1001713B170221_170320_C9 NODE_943_length_1644_cov_32.5552, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1614 47 100.0 30 ............................................... TGAATTGCTGCTACGTCAGACTACATAAAA 1537 47 100.0 30 ............................................... AAAGACATAATCCGGATTACCAGAAGGAGG 1460 47 100.0 30 ............................................... CAGAGGTGAAAGCGTAACCTTTCCAGAGGT 1383 47 100.0 29 ............................................... ACCTCTCAGATATATATCTGATGCATCTT 1307 47 100.0 30 ............................................... ATAAGACAATTTATGGTTGTTGGTTACCAT 1230 47 100.0 30 ............................................... GTCCGTGAGGAAATGCAGAAGCTGGAGACT 1153 47 100.0 30 ............................................... AAATACCCCTTGCCACTCTCATAGACATGC 1076 47 100.0 30 ............................................... AGAAGTTCTTTTGAGGCGGAAGAAATATCT 999 47 100.0 30 ............................................... AGAAACGTAATTATCAGCATCTACTTCTTT 922 47 100.0 30 ............................................... ATCAGCCGTTTTCTTTGTACCTTTCGTTTC 845 47 100.0 29 ............................................... TCGAAACAAAAGTGAGAAGAATACTTGAC 769 47 100.0 30 ............................................... GGAAACTTCAGAGAAGAAAGCGTTGAATAC 692 47 100.0 30 ............................................... ACAAGCAAGAACGGAAAGAAGAGAAGGAAC 615 47 100.0 30 ............................................... CCAACTTGCAGGGAAAAGGTTTATCTTTGT 538 47 100.0 30 ............................................... CAAACCAACGGTGAGAGAAATAACCTCATT 461 47 100.0 30 ............................................... CGCCGTGTATTGTTCCCACATTTTGACCCG 384 47 100.0 30 ............................................... TGCGGGCATAAAATCGAAACGGGCGCAAGT 307 47 100.0 30 ............................................... ACGATTTACCGTTTTAATCTGTTTGAGTAT 230 47 100.0 30 ............................................... ATACCCACGTACATAAACAGGCATTGCGGT 153 47 100.0 30 ............................................... ATTGAGTATTTGAAAGACGATTATTAGTAT 76 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGAAACAGT # Left flank : GGAACTGTTGATATTCAGCCTGTACATCT # Right flank : TAGTATTGCACTACACGAACAACGTAACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGAAACAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //