Array 1 244271-244571 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINXZ010000023.1 Enterococcus faecalis strain S.33.19.Ef S.33.19.Ef_contig23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 244271 37 97.3 29 ....................................G AATTGATAATTGAAGCCTTAACAAGTAAT 244337 37 94.6 29 .......C............................C TTTTGATTTTGGTGCTAATGCATCAAAAT 244403 37 100.0 29 ..................................... TGACTATGCGAAAGTTAATCGTTTGTTAC 244469 37 100.0 29 ..................................... GAAAGTGGGGAATGCGTAATGCCGTACTT 244535 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 97.8 29 GTTTTGGTACCATTCTAAACAACATGACTCTAAAACA # Left flank : TTCTCGCCAATGTTACAATATCAAACATATTATTTCCTCCCTGATTTGCCTCCACACAAAGAAACAAGCTTACCTGAATTGTTCATTTCCATTAGCGATGACTCCTTTTATCTACGAAACTAAAAGAAAATTCAAGTGAACTTTTCCAAAAAGTGTGAAAATGCATGTAATATAGAATAATTCCAATCTAAGTATACAACTTTCTGAGGCAGAAACCAAACAATACAGAAGCATTTCTCACAATTTTTTTAGGTGCTCCCAAGATTTCTTCCCTTTCTTCTATCAATAAAAAAAGCCCTTCCTAAAAAAAGGAAGAACTAATCTCAATCTATCAACATTTTGACTTATCACTTGATTAGTTTTCGAAAATTGAAGCAGCTCGTCTTTGATGATAAAAATTCTAATCTTGTGATGAAAATTACGGATTGCTTGTAGTGATAGTTTGTTTTTAAACAACATGACTATAAAACAGGGGAGAAAAAGCCAAATCAAAAAAGTTT # Right flank : CTCGGAGAATTATTTTTTCTCCATGATTCCGTATTCGCATCACTTATCTATAGCTAGATTTCAGTTTAGAAGGTCTGATTTTTTTTCTTCACGTTTATTATACCAAACTTTCTCCTTCTTGGCGGAAAAACCCACCATTTTTCAATGGTGGGTTTTCTTTATTTAGTAGCTGTAACAGCGAGCCAGATTTCACTATACTTAGCTTCTGCTGGTCCTTGATATTGCGTAAACGAAATTTCTGGTGCTGCAACGACTTGGTAACCAGATGAAGGCAACCATTCAGAGAATATCCTTGCCCAGGTTTCTTGTAATGTTTGTGGGAAAGGACCTTCATTTGGAAAAACCGCCCATGTATGAGCAGGTACGCTTAGTTGCTCCAAATCTTCATAGGTATTTTCTTGCGAAGTGGCAAAGCCAATCATGTGTGTCATTTCTCCACCTTCTGTTGTTCGTCCCTCTTGAAAGTCAAAAGAAGCATTTACTACTTGATGAGGATATAT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACCATTCTAAACAACATGACTCTAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 65226-65988 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINXZ010000011.1 Enterococcus faecalis strain S.33.19.Ef S.33.19.Ef_contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 65226 37 97.3 29 ....................................A AAAACATCCTGCATCTTTTCTAAGTTATC 65292 37 97.3 29 ....................................A CACCTTTAAAAATATGAGTATAGTTTTCT 65358 37 97.3 29 ....................................T GGCTTGTTGTTACGTGTATTACAGACGGG 65424 37 100.0 29 ..................................... CACACACACGCTACTCACAGGCATTATAG 65490 37 100.0 29 ..................................... TTTTCATTTAAGTAGTGCGCTTGATATGC 65556 37 100.0 29 ..................................... CGAGAAAAAACGTATGGTGGAAATTGTTG 65622 37 97.3 29 ....................................T AAAGCAGCTTCTAAAACAGAAGGTGAAAT 65688 37 100.0 29 ..................................... ATTGGTAAGATTACATGACCTTTAGTACG 65754 37 100.0 29 ..................................... TGCAACAAAAGAATATTGTTGTCAATGGT 65820 37 100.0 29 ..................................... ATTGGTAAGATTACATGACCTTTAGTACG 65886 37 97.3 29 ....................................A AAGAAATGGACACATTACACAACGCTTTC 65952 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 12 37 98.6 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Left flank : GCACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTACTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAAAAAAATAATTCTCCGAG # Right flank : CAATGTAAATGCTCATTATGATTTACATATGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACGATTTGATTGATGTAAAAATATCGTTAATATGTATAAATATGGTTATTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAAAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGCCCCAATTAAAGTCAAGTTAACCACATTGAAAGATAGAACTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAAAGCGGATTAATTTCCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAAT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //