Array 1 698-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESPI010000092.1 Capnocytophaga genosp. AHN8471 strain AHN 9528 AHN9528_contig_92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 697 46 97.8 29 ..........A................................... TCTTTTAGTTAAAATTACTTAGTACGTCC 622 46 100.0 30 .............................................. GTGCGCACAGGCTGGTTTGACCCTGTTCCA 546 46 100.0 30 .............................................. CTGGTATAGACCAATTCCTCATTCAGGACG 470 46 100.0 30 .............................................. TTCAGAAGGTCGAAGAGCAGATGACCAAGG 394 46 100.0 30 .............................................. CTATTTCACTGTTAGATTTTCAAACTCCTA 318 46 100.0 27 .............................................. AAGCCCCTATCATCATATACGAGCGTA 245 46 100.0 30 .............................................. AGGACTCATCGTAGGTCCTTCAGGAAGCGG 169 46 100.0 30 .............................................. ATACCGCTATAGCCCTTACTGTAGCACGTG 93 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 9 46 99.8 30 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC # Left flank : TTGCTTTCAAATTTTGTAGTTTTCTGATTGATAACAACTACCTTTTCTAACAGGTTCGTAATCAAAG # Right flank : CCGAGTAATGCTAACGCCTTGCGCCTACATAGTTGTGAATTGCTTTCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.74%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 562-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESPI010000091.1 Capnocytophaga genosp. AHN8471 strain AHN 9528 AHN9528_contig_91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 561 46 100.0 30 .............................................. TAAGAAACCTAAAGCGTATCCGTATCTTAC 485 46 95.7 30 ..........................A.................T. CCAAATACGTACAGCAGCACGGTTGGCATC 409 46 100.0 30 .............................................. TACCCGCAAGAGTTTACCAAAAAACTCAAC 333 46 95.7 29 ..............C........A...................... AAAGCACAAATACGTACAATTCAAACAGG 258 46 100.0 30 .............................................. TATAGTTGCTTTATTGTCGCTTAATAAAGT 182 46 100.0 30 .............................................. CTATCTTAATCACTTCAAATCCAAAGAACC 106 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 7 46 98.8 30 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC # Left flank : AATATACTTCAAATGCATTAGATTCACGTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAACCTTTGCAATCTCATCAAGGTACAAGTCGCCGTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAACGTCAGACCTTAGAGAGCCTAATGTTTCTTTGTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAACTTAAAAAGATAACAGACGAAAATGGAAAAACGAGATATATCTACAAAGAACAAGTTGCAAATCGAACCACACAACAACAGACTACTAACAGTCGATATGTTGATGGACGGTTACAAGAAGTACGGCGTTGGATGGTTGCAACAAACAATGGACGGTCTCTTGGCGGCGAGAGATTCAAGACAGTTTATGAATTCTTTAACCGAAGAGCAAGCGAAAGAGTACGTGAGCAAGCAGAGGGAAAGGTTGATGAATATATAATTGATTGTCAGCGAGAG # Right flank : CATAGCTAACACCTATGAATACAATAGCCCAGTTGTGAATTGCTTTCAAATTTTGTAGTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.74%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1355-837 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESPI010000091.1 Capnocytophaga genosp. AHN8471 strain AHN 9528 AHN9528_contig_91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================================== ================== 1354 46 95.7 30 T...............................T............. AGTGTTACTCTTAGTGGTAACGCGCTTAAT 1278 46 89.1 46 ...................C.......C.A.TT............. TTAGGTAATTTCCAAATTTGCTAATTCTCAAATTTGCTAATTTATA 1186 46 97.8 30 ................................T............. GACACGCACGCTTTTCTGTTTCTCTTTTTC 1110 46 100.0 30 .............................................. GAGAATATACTTCAAATGCATTAGATTCAC 1034 46 100.0 30 .............................................. CTTTGCAATCTCATCAAGGTACAAGTCGCC 958 46 100.0 30 .............................................. GTCAGACCTTAGAGAGCCTAATGTTTCTTT 882 46 97.8 0 ................................T............. | ========== ====== ====== ====== ============================================== ============================================== ================== 7 46 97.2 33 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Left flank : TGCAATTTACTTGTTTATAAGTTCAATAGCCTATGGAGATCATTTGGTAACCCTACCGCTGTACTTAACAGGGGTAGTGATTATGAGTTATCTCTTTGTAAGAGAGAGACCTCAACAGAAGTGGGGTAGTTTCTTGCGTGTGGTGAGTCCTTTTGCAGTGCTAATGCTCATCGCTGGCAGCCTGCAAGATGCGAATACGAGCTTGGCACTCGGTTATATTGCTAGCACTGCGGTGGCTTTCCTATTGGGAATGTGCATTGCTACTGTGAGCAAGACGTACCAAAAGATAGGTTTATCCGTGTTGGCTTTTCTGCTGGTAGTTGCCGTACGGTTGTCGTTTTCAGCGGAGTTTCAATATTTGATAGGCGTACATTGGTATACCTTAGGAAGTTAATCATCTAATAGAATATAGAAAGAGGTTGCTCAGAAGTCTGGGCAACCTTTTTTATGCTTTGTTACTTATAAATCTTTGCGCTTTATTGTTGAACTATTTGATAAAT # Right flank : TTAAAAAGATAACAGACGAAAATGGAAAAACGAGATATATCTACAAAGAACAAGTTGCAAATCGAACCACACAACAACAGACTACTAACAGTCGATATGTTGATGGACGGTTACAAGAAGTACGGCGTTGGATGGTTGCAACAAACAATGGACGGTCTCTTGGCGGCGAGAGATTCAAGACAGTTTATGAATTCTTTAACCGAAGAGCAAGCGAAAGAGTACGTGAGCAAGCAGAGGGAAAGGTTGATGAATATATAATTGATTGTCAGCGAGAGGTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAACTAAGAAACCTAAAGCGTATCCGTATCTTACGTTGTGAATTGCTTTCAAATTTTGTAATTTTGTGATTGATAACATCCCAAATACGTACAGCAGCACGGTTGGCATCGTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAACTACCCGCAAGAGTTTACCAAAAAACTC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Alternate repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 2843-2578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESPI010000091.1 Capnocytophaga genosp. AHN8471 strain AHN 9528 AHN9528_contig_91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 2842 38 82.6 30 --------...................................... GGAACATTGTAAATGTTATGATTAAAGGAA 2774 46 97.8 29 ..........................A................... CATAGCAGGAAAGGTTGAACGCGGGATTA 2699 46 100.0 30 .............................................. CCTGTATTGGCAATTGTGTTGCGCGCCAAA 2623 46 95.7 0 .....A..........................C............. | ========== ====== ====== ====== ============================================== ============================== ================== 4 46 94.0 30 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC # Left flank : | # Right flank : GATGCCTTTGCGCTCATCCCTGCGAGGCATCAGACGGTGGCTACTATTTTTAAGAAGGCGGGCTACGCTACGGCTGCCATCGGCAAGTGGCACTTAGGCTTAGGCGATAGGGGCGGTATCGATTGGAATAAGCCGATCCCTCATACGCCTAATGATATTGGCTTTGACGAGAGCTTTATTATGCCAGCGACCTCTGACCGCGTGCCTTATGAGGTAGCACCTGCACGCGACACGCAGCCGCATTGGGCTTCGTGGGTAGGTAAGGACAAGAAGGGTCGTACTTATGCGGTGCAGGAAGGGCTGCGCAATGTGCTGGCAGTGCTGAAAGGCAAATACAAGTATATCGAGCCTACCGCCCAAACTATGAAACGGGCTTGGGAGACGGGCATCGAAACAGGCTTTGAGGGCGCTCCTCAGCTCTACGACCTGAGCGTAGACCCTGCTGAGAGACACAATATCGCTGGGCGGCAGCCTGCATTAGTTAAGGAGTTTGAGGCAGT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.68%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //