Array 1 68867-67433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDS01000014.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000205 CFSAN000205_contig0013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68866 29 100.0 32 ............................. CCAGCGCAAGCGGGAAACAATCATCGGGCAAG 68805 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 68744 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 68683 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 68622 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 68561 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 68500 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 68439 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 68378 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 68317 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 68256 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 68195 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 68134 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 68073 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 68012 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 67951 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 67890 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 67829 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 67768 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 67706 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 67645 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 67584 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 67523 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 67462 29 96.6 0 ............T................ | A [67435] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGACTATTCGGTCAAAACAGCCTCCATTCTCAG # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7978-7278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDS01000079.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000205 CFSAN000205_contig0078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7977 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 7916 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7855 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7794 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7732 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7671 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7610 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7549 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7488 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7427 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7366 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7305 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //