Array 1 1222114-1223255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFUQ010000001.1 Clostridium saccharobutylicum strain DJ093 Ga0423252_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1222114 30 100.0 36 .............................. AATAGAACTTGCTAAAAGGTTAGGAGTTGCTAAAAG 1222180 30 100.0 36 .............................. AATTAAGTGATGAAAGAATAGAAGAAAAAGAAGTTG 1222246 30 100.0 35 .............................. GAAGGTAATGAAAGCATTTCACTCAACTGACTAAA 1222311 30 100.0 35 .............................. GCTAGTAATGAAGATGATGATGTAGACACTACTAA 1222376 30 100.0 36 .............................. ATAGGTGATAAGGATTATTCTATTTCTAGCAGTTGG 1222442 30 100.0 34 .............................. TGTTTTCCATCCATTTCGTACTCATTCGAATTTA 1222506 30 100.0 35 .............................. GAAACTTTTTCTTTTTTATTTTTAGATTTAACGCT 1222571 30 100.0 36 .............................. AGAAATTTTATACACATAAGTTCATTCACTTCAAAT 1222637 30 100.0 35 .............................. GATTTAATGGAAATTTAGATGAACTTTCTGTATTA 1222702 30 100.0 36 .............................. ACTAGTGAAACTGCCATCAATACTTACATTGAATTC 1222768 30 100.0 36 .............................. TTAAATAATTATTAGAATTAGATATACTACTAGTTG 1222834 30 100.0 35 .............................. GCAAATGGAACAGATGTACTTGATGAAGAATATGA 1222899 30 100.0 35 .............................. GCACATTTATTCAAAACCATTTGTATAGCATTTTT 1222964 30 96.7 35 ..C........................... TGACCTACTACGTTTTCATGACTCCCCACCATGAT 1223029 30 96.7 35 ........C..................... AGTGCTGTAGACATTTCCCCAATTACTAAAAGAAT 1223094 30 100.0 36 .............................. TTGTCTAATTTTTTTATTCCTGGTATTTCAGTTATT 1223160 30 100.0 36 .............................. AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT 1223226 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 99.6 35 GTTGAAGATTAACATTATATGTTTTGAAAT # Left flank : AGGGTGTTGAAACACAAGATGTTTCCTATATATCTACTTTGGATAGCTTGTTCTTAAAAGATTGTGTTAATATAAAAAAATTAATCAAACCTAATGGATTTAGACCTGTTAAAGCAGCACCAAGCTGTGGTTTAGAAAAAATGCGAGAATATGTATACCAAGAGTTTTTACCATATGCTTTGGAACCTAAGTTTAATACATATGATACTAGAAAATTTATTTGTACTAATAAGTCTATAGAGGTTAATGATAAAGAATCTATTATCTATAGTATTAATGATAAAAATCTATTTTTCTATTAAAAAGTAACAAGTATACAAATAATTTACCAGGCGATTTTAATAAGTAATTTGTAGCGAAATATCTATTTTATGAGCTTTTACTATTTTAAGTATTATTGTATTTAATTTTATAAAATAGCTGGTAAAATAATATGCAAATGTAGGTGAATGGCTGGATTAAAAGATATTAATATATATAGAAATGACTTATTTACTTTG # Right flank : TATAGATACAGTCCAACTAATTTAATAAAAATAAAAAAGGAAGAAGAGAATTTATGTATTTTGAAAATATAAAAATTATAGATATATCTACGTTATTAAAAGAGCCATCTGATATATATTCTCATACTAAGAGTGACATTTTAGAATATGAAACTCTAGCTGAGCATAATGAGCGGTGCATAAAATATTTTTATAAGATAGTAGATGTAAAAAATCTAGATAGTGTATTTAATAATTTTGAACAAAGACTATTAAAAGGCTGCTCAAGTAAATGCATTAATTTGTGGAAGGAAATTGTATTAAATACTGTATTTTTCCACGATGTAGGTAAGAGTAATCCTGGTTTTCAAAAAGAAAAAATGAAAAATGAAAAGTATAAAAATATAAAAGTAAATAATTCTAATCATTCCCGTGCATCAGGTATAGTTTTCTTTAATCATTATTATAATGAAGTATTTGCTGTTAATAATGATGAAGCTAAGGTGTTATTTGTTTTCCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGATTAACATTATATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1789929-1787810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFUQ010000001.1 Clostridium saccharobutylicum strain DJ093 Ga0423252_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1789928 30 100.0 36 .............................. CTCAACTGACTAAATGTAAAATCAGAATACCTTGAA 1789862 30 100.0 34 .............................. TGATGAAATATGCACTAAGAGGATTTGATTGATA 1789798 30 100.0 36 .............................. ATAACAACTAAAGTCTGATGTTCTTTACCCAAGTCA 1789732 30 100.0 36 .............................. TTGATGGAACAATGGGCAATTGATTTAGGATTAACC 1789666 30 100.0 35 .............................. AGTATAAATACGTTTCATTCTAATAATAGTTACGT 1789601 30 100.0 37 .............................. GATATTTTAATATTTGCGATTCTTATTTTCTTTATGA 1789534 30 100.0 35 .............................. ACGAACTGAATTACCTGACCTTACAAAAGTGAGTC 1789469 30 100.0 34 .............................. ATTCTATTCTCTTGAGTTTTATCTATTTCTAAAT 1789405 30 100.0 36 .............................. ACAGAAAAAGAAAATCCACTAACAGAGCAACCATAA 1789339 30 100.0 35 .............................. TATGTTTTATCATATGTTCAACCTCACTTTTACTA 1789274 30 100.0 35 .............................. CTACCACTTTTTGTATAACATATAGTAACATGAGT 1789209 30 100.0 36 .............................. AACATAATAATAATTTCCTCCTTAAATTAAATTTGC 1789143 30 100.0 35 .............................. GCTAATTTTAAATAAATATCAACATTTCCGGAATA 1789078 30 100.0 34 .............................. TTAGGAATTACCATGTAGAATTTACCACCATTAT 1789014 30 100.0 36 .............................. GTTTTAGTATCAGTTTTAGTGTTTGTATCAGTAAAA 1788948 30 100.0 36 .............................. AAAGCTTCTTAAAATCTACTTAAATATGCCTACCTT 1788882 30 100.0 35 .............................. ATATAAAAGGTCAAGATGGAAAAATTAACTGTTGG 1788817 30 100.0 35 .............................. TTCTGATAATGTTAAGTTTAAGTCTGTTGCACAAG 1788752 30 100.0 34 .............................. GAAGGAGCAGGGTCACTTGGATTATCAGTTTTCG 1788688 30 100.0 36 .............................. TACATTGATTTAAAAGATGATGAAATTAATATAGTT 1788622 30 100.0 35 .............................. CTCATCATTTATCACCTCTCTATTTTAAATACTTT 1788557 30 100.0 35 .............................. TTTGCATCGAATCCAAGTTGAGTAAATCCATCTAT 1788492 30 100.0 36 .............................. TGTAGATAATAGTTTAGTACGAGCAAAAAGAATAAA 1788426 30 100.0 35 .............................. TTCCATCTATTTGTAATACACTAGCATTAGCTGGA 1788361 30 100.0 36 .............................. ATCTACAATAGATAACTTAAGCCCAAGTAACTATGT 1788295 30 100.0 34 .............................. TTGTATAAAAAAAAGAAGACTAAAACAAATCAAA 1788231 30 100.0 37 .............................. AACCATAAGATACCTATGTATCCAAAAGGCGGTTTAA 1788164 30 100.0 35 .............................. GCAGTAATTACACTCTTTGGTAATAACTTTAACCT 1788099 30 100.0 36 .............................. TTATTTGAAATATCTATACCTTTCATTATTCATCTT 1788033 30 100.0 34 .............................. TATTTAATAAGCTTATCTATAACTGGCTCAAAGT 1787969 30 100.0 36 .............................. AAATTAGCCAATATAGCAAACAGAAAAGGAAGAAAT 1787903 30 100.0 34 .............................. AGTAAGCCATGGGGTAGCTACAGAGTAAGTGTAG 1787839 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 99.9 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AATTCATTCCTTTTAGTTTAAAGGAGGGAATGTAGTGAGTAAAGTTAGTAATTATAATTATGCTTTTGTATTTTATGATGTCAATGAAAAACGAGTACAAAGGGTTTTTAAAGTTTGCAAAAAATACTTATCTCATTTTCAAAAATCAGTATTTAGAGGAGAAATGTCTCCTTCAAAGCTAATAAAGTTTAAAACAGATTTAAATAAAGTTATTGACAAAAATGAAGATTTCATTTGCATAATTAAGTTAATGAACGACAATGTATTTGGAGAAGAAGTATTAGGTGTAACATCGGGAGCAAATGGTGAGGATTTAATAATATAATTTACCAGGCAAAAACAAATTTATATCTACGAAAAACAAGGTGTAATGCGGATTAACATAAATATATTTAAAAAATTAATTTAAGTTGAGGGTGCTTGGTAAATTTTTAAGGATGTGTTACACTAACTATAATGAAAGCATTATCTTAATATAAGAAGTGGCTTTTTTCTTAGGG # Right flank : TTATCTAAAACATACTTGTGCTTTGTATAATTTAAAGACTAACATTAACTATGATGAAACCAATTGTAAAAGACATATTGTTTTTAGCATAAAAATCAGAAGAGGCAACTGAAAATGTATGGTAGTAATTATGGATTTAATAGATACATTAAGAGTAAGCTTAGAGAATTTAGGATTTAAATTTACGTAAAATTATGAATTAAAAAATAAATAGCAAATTATAAAATCGCATTATTCAAGAATGAAACAGCAACCTTTTTAATTTATTGCGTCAGTTGCCTTGTATTAAGAAAGGATGCATTTGCAATTTGGTAATATTACGTTATTCGTTACATGGAAAGTTTACAATTATTTACACAACATGTAGACTTGGCGCGGTAAACAAACATTGTTCTTTGATAAATAAGCACTATAATATTTACAAAATATGCTATAATTGATTGAAAGATAGTAATTTGTATGAGCGATTATATGAGGAGATGTATTATGATTAAAAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 1867633-1867763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFUQ010000001.1 Clostridium saccharobutylicum strain DJ093 Ga0423252_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =============================== ================== 1867633 23 95.7 31 .................G..... ACTACCAGTACCTGTACCGAAGCCTCCGGCG 1867687 23 100.0 31 ....................... GCCACCAGTGCCTGTACCAAAACCACCTGCA 1867741 23 95.7 0 ................G...... | ========== ====== ====== ====== ======================= =============================== ================== 3 23 97.1 32 CCCATTCCGCTTCCTGAACCAAA # Left flank : CTAATTCTACCTCTGCACCTAATTCTTCCGTTCCCATTAAAGCTTCCTTAACAAGAATTTCTGAATTACTCATTTTTCTTCCACATGTTAATCCTAATATTTTCATATAATTTCTCCTTACATATAATATATTTATGAATATTGTTTTTACTCACTTTTTGAATTATATCAATTTATTTGTATTCTAATAAGTTATTTTTACCTTTAGATCAAAAAAACTAATTTTCTTAACATATGTACTCGTTATCAATTAAGTTATATACTTAATGAAATAAACTACCATATATAACTTATATAAAAAATTAACGACGATTTTACTTGTTGCATTTCACTTTAAAAACATTTTTATAATATTATTGTTTAATTTTCTGTATATAAAAAAGGATATGAATATAAATTCACATCCTATAATAAGCTTAATTTACTCGTAGTACAATCTATTTCTTTTATTTACAGTACTACTCCCATTTCTTGTATTTGTGCCTGTGCTTCCTCCTGTA # Right flank : AGCCACCAGTACCTGTAGAACCTCCAGTAGTTGTTCCTGTGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCAGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCAGTAGTTGTTCCCATGCCACCTTTTAGCAATTGAGATGCACCACTATTTTGCCAATTTTGAACTTGGTTAATTGCTTCTTGAGGAGTTTTTCCTAATCCAACAAGCACTCCCATCAAAGTAATCCTCTGATATAAACGTTGCATGTCAGTTCCCTGTGTACCCATGGTACTTCCCTGTGTACCCATGGTACTTTGATTACTTTCTCTTAAAGCATAACTGACTAATGGAGTAATATACCTAATCCAATCATCTGGAGTAAATTTTGATGTATCTTGCTTTGCTTGCCTGTTCATGGACATGAAGAAA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCATTCCGCTTCCTGAACCAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //